New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 202486194 (0.090)427 (0.200) 110/252 27.4 68.0% intergenic (+264/‑411) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
?CP016816 202490 = 207 (0.100)intergenic (+268/‑407) JCVSYN2_00840/JCVSYN2_00845 hypothetical protein/lipoprotein
Rejected: Coverage evenness skew score above cutoff.

Only 100 of 520 total aligned reads displayed.

ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTG  >  CP016816/202370‑202619
                                                                                                                           |                                                                                                                                  
ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑A‑ACAAATAAAAAAAAAAAAATCACC‑‑Taaaa‑aaataaaa                                                                                                                          >  1:4068384/1‑128 (MQ=255)
  aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATCCCC‑‑‑TAAA‑AAATtaaaaaa                                                                                                                       >  1:3537642/1‑128 (MQ=255)
    ttttgtttatgTTAATTAAAATAAAAAAAAATTAATAATTTTTATAATTTAGATCCTTGTTATCTATTTTTTTATTTGTTT‑TTTTT‑C‑AAAAATAAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTaaaaaaaa                                                                                                                      <  1:1591851/118‑1 (MQ=255)
    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATCCCC‑‑ATAAA‑AATTaaaaaaaa                                                                                                                      >  1:3440143/1‑128 (MQ=255)
    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGCAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATAAC‑‑ATTAAA‑AATTaaaaaaaa                                                                                                                      >  2:3482936/1‑128 (MQ=255)
     agagTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTT‑ATATT‑C‑ACAAATAAAAAAAAAAAAATCAC‑‑‑ATAAA‑AAATaaaaaaaaaa                                                                                                                    >  2:344408/1‑128 (MQ=255)
        gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTAATTTATTA‑AACAT‑C‑ACAAATAAAAAAAAAACAAACACATTAaaaa‑aaaaaaaaaaaaaa                                                                                                                    >  1:1526830/1‑128 (MQ=255)
         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATCCCC‑‑TAAAA‑AAATaaaaaaaaaaaaa                                                                                                                 >  2:2638033/1‑128 (MQ=255)
         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AAATaaaaaaaaaaaaa                                                                                                                 >  1:4287864/1‑128 (MQ=255)
         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAAT‑AAAAAAAAACAAACAACAT‑‑‑AA‑AAATaaaaaaaaaaaaaaa                                                                                                               >  2:2362556/1‑128 (MQ=255)
         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATATATTTATTAATTT‑ATCTT‑C‑ACAAATAAAAAAAAAAAAAAACCC‑‑‑TAAA‑AAATaaaaaaaaaaaaaa                                                                                                                >  2:2566026/1‑128 (MQ=255)
          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTAATTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAAAAAAAACC‑‑‑TAAA‑AAATaaaaaaaaaaaaaaa                                                                                                               >  1:2000625/1‑128 (MQ=255)
          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATACCCTT‑‑‑AA‑AAATaaaaaaaaaaaaaaa                                                                                                               >  1:441685/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                                               >  2:438413/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACCATCACC‑‑‑TAAA‑AAATtaaaaaaaaaaaaaaa                                                                                                              >  1:4482825/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATACAC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                                               >  2:3749917/1‑128 (MQ=255)
           aaGGTTAATTAAAATACAATTAAATTAATAATTGTTATAATTTTTCTCCTGGTTTTCTATTTTTTTATTTTTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaa                                                                                                               <  1:3774837/128‑1 (MQ=255)
            agtttaaataaAATACCAAAAACTTAATAATTATTATAATTAATAACCACTTTTACTATTTTTTAAATTTTTT‑AAATA‑A‑ACAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                                              <  2:4459250/125‑1 (MQ=255)
            aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATCCAC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                                              >  1:2322825/1‑128 (MQ=255)
            aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑AAATT‑C‑AAAAATAAAAAAAAAAAAAACCCAATAaaaa‑aaaaaaaaaaaaaaaaaa                                                                                                                >  1:938004/1‑128 (MQ=255)
             tgTTAATAAAAATAACAAAAAATTAAAAATTATTATAATTTATATCCTTGTTATTTATTTTTTTTTTTGTTT‑TTTTT‑CAAAAAAAAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaa                                                                                                              <  1:3941941/127‑1 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATCCCC‑‑‑TAAA‑AAATtaaaaaaaaaaaaaaaaa                                                                                                            >  1:4024746/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATCCC‑‑ATTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                                             >  2:1167511/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAAACCCCTT‑‑‑AA‑AAATaaaaaaaaaaaaaaaaaa                                                                                                            >  1:3804957/1‑128 (MQ=255)
             ggTTAATTAAAAAACCATAAAATTAATAATTCTTAAAATTTATATCCTCGTTATAAATTTTTTTATTTGTTT‑ATATT‑C‑ACAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaa                                                                                                             <  2:3689325/128‑1 (MQ=255)
             cgTTAAATAAAATAACTTAATATTAAAAATTATTAAAATTTAAAACATTGTTATATATTTTTTTATTTTTTA‑AAATA‑C‑AAAAATAAAAAAATAAAAATACCC‑‑‑TAAA‑AAATtaaaaaaaaaaaaaaaaa                                                                                                            <  2:3359781/127‑1 (MQ=255)
              gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AAATaaaaaaaaaaaaaaaaaa                                                                                                            >  1:2357636/1‑128 (MQ=255)
               tttatttaAAAAACATAAATTTAATAATTTTTATTATTTTTTTTCTCTTTATTATTTTTTTTTTTTTTTT‑ATTTT‑T‑AAAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaa                                                                                                           <  2:3531515/125‑1 (MQ=255)
               ttaattaaAATAAAATAAAATTAATAATTATTATAATTTATATAATCGTTTTATATTTTTTTTTTTTTTT‑TTATT‑A‑ACAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaa                                                                                                          <  2:1653510/128‑1 (MQ=255)
                taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaa                                                                                                          >  1:4237436/1‑128 (MQ=255)
                taattaaAAAAAAATAAAAATAATAATTTTTATAATTTTTATCCTCGTGTTTTATTTTTTTATTTTTTT‑TTATT‑A‑ACAAATAAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaa                                                                                                          <  1:3725962/128‑1 (MQ=255)
                 aatttaAATAACATAAAATTAATAATTATTATAATTTATATCCTAGTTATATATTTTTTTATTTTTTT‑ATCTT‑C‑ACAAATAAAAAAAAAA‑AATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaactaaaa                                                                                                        <  2:4542778/128‑7 (MQ=255)
                 aattaaAATACCATAAACTTAATAATTCTTATAATGTATATCATCGTGATATATTTTTATATTAGAAT‑ATCTT‑C‑ACAAATAAAAAAAAAACAAT‑‑CAAAAAAAA‑AAATaaaaaaaaaaaaaaaaaaaaa                                                                                                         >  2:1012030/1‑128 (MQ=255)
                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTT‑ATCTT‑C‑ACAAATAAAAAAAAAAAAATAAAC‑‑TTAAA‑AAATaaaaaaaaaaaaaaaaaaaaa                                                                                                         >  1:23843/1‑128 (MQ=255)
                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATCACC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaa                                                                                                        >  1:1302124/1‑127 (MQ=255)
                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaa                                                                                                        >  1:1424626/1‑127 (MQ=255)
                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTT‑ATCTA‑A‑ACAAATAAAAAAAAAACAAACAACTTAAAAA‑TAaaaaaaaaaaaaaaaaaaaaaa                                                                                                          >  1:2853383/1‑128 (MQ=255)
                     aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATCCCC‑‑‑TAAA‑AAATaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  1:2980086/1‑123 (MQ=255)
                      aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  1:412303/1‑123 (MQ=255)
                      aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAAAAATCAC‑‑ATTAAA‑AATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:548283/1‑123 (MQ=255)
                       aaaaaaaTAAAATTAATAAATATTAAAATTTATATAATCCTTTTATATTTTTTTAATTTTTA‑ATAAT‑A‑AAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                                  <  2:1245502/122‑1 (MQ=255)
                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaaaaaaaaataaaaaa                                                                                                   >  2:3635335/1‑121 (MQ=255)
                       aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAAAAAAATaaaaaaaa                                                                                                   >  2:3650861/1‑128 (MQ=255)
                        aTAACATAAAATTAATAATTATTATAATTTATATACTTTTGATATATTTTTTTTTTTGTTT‑TTTTT‑A‑AAAAATAAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                                 <  1:3398008/128‑1 (MQ=255)
                         aaacaaaaaaTTAATAATTTTTATAAATTTTATCATATTTATATTTTTTTTTAATTTTTT‑ATATT‑A‑AAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                               <  2:2104003/122‑1 (MQ=255)
                           ccATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATCCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAACaaaaaa                                                                                                  >  1:3520338/1‑128 (MQ=255)
                           ccATAAACTTAATAAATCTTATAATTTATAACCTCGTTATCTATTTTTTTATTTTTTT‑AAATT‑A‑AAAAATAAAAAAAAAACAATACCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAAct                                                                                            <  2:3668386/128‑1 (MQ=255)
                             aataaattAAAAATTTTTAAAATTTATATATTAGTTATTAATTTTTTTTTTTTTTT‑ATATT‑A‑AAAAATAAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                          <  2:4308767/122‑1 (MQ=255)
                             aaaaaaTTAATAATTATTATAATTTATATCATATTTATCTATTTTTTTATTTTTTT‑ATATT‑A‑AAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑AAAT‑‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                          <  2:4092868/126‑1 (MQ=255)
                             aTAAAATTAATAATTATTAAAATTAAAATACACTTTATATATTTTTTTATTTTTTT‑ATATT‑A‑AAAAAAAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                                           <  2:754566/128‑1 (MQ=255)
                              taaaaattataatTTTTATAAATAATATACTCGTTTTAAATTTTTTTAATTTTTT‑AAAAT‑A‑AAAAATAAAAAAAAAA‑AATCCCC‑‑TTAAA‑AATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                                           <  2:1374967/120‑1 (MQ=255)
                              tAAAATTAAAAATTCTAATAATGTACAACCTCGTGATCAATTTTTTTATTTGTTT‑AACTT‑A‑ACAAATAAAAAAAAAACAATCCCCAT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                          <  2:868899/128‑1 (MQ=255)
                              ataaCTTAAAAATATTTAAAATGTATATACTGTTTATCTATTTTTTTTTTTTTTT‑AAATT‑A‑AAAAATAAAAAAAAAACAATCCCCTT‑‑‑‑A‑AAAT‑TTAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                         <  2:3994370/126‑1 (MQ=255)
                               aaaattaaaaattaTTAAAATGTTAATCCACTTTATCATTTTTTTTATTTTTTT‑ATATT‑A‑AAAAAAAAAAAAAAAACAAACCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                         <  2:3895015/128‑1 (MQ=255)
                                 aCTTTATAATTAATAAAATTTATATAATAGTTATCTATTTTTTTAATTTTTT‑ATATT‑C‑ACAAAAAAAAAAAAAAAAAAACCCCAT‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                                        <  2:491437/128‑1 (MQ=255)
                                   ttAATAATTCTTAAAAAGTATACCCACGTTATCTTTTTTTTTATTTTTAT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                                     <  2:147031/128‑1 (MQ=255)
                                                 aaTGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAA‑TAAAAAACAACTATATTTGATAAAAATGCCttt                                                                       >  1:1167506/1‑126 (MQ=255)
                                                   ttaatataatagTGATCTAATTTTTTATTTTTTT‑ATATT‑C‑ACAAATAAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                                      <  2:4191667/117‑1 (MQ=255)
                                                   attatttaatattGATATATTTTTTTATTTTTTT‑ATATT‑A‑AAAAAAAAAAAAAAAAAAATTCCC‑‑ATAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                                      <  2:1578354/116‑1 (MQ=255)
                                                     tttaTCCTCTTTATATATTTTTTTTTGTGTTT‑ATTAT‑A‑AAAAATAAAAAAAAAACAAACCCCTT‑‑‑AA‑AAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                 <  1:4554799/125‑1 (MQ=255)
                                                      ttttcaacttGATATTTTTTTTTATTTTTTT‑ATATT‑‑‑AAAAAAAAAAAAAAAAAAATAAAC‑‑CTAAA‑AAA‑ATAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAc                                                                  <  2:4217607/119‑1 (MQ=255)
                                                        tttttatttttttATTTTTTTAATTTTTT‑ATATT‑A‑AAAAAAAAAAAAAAAAAAATCAACTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                                <  1:3579091/116‑1 (MQ=255)
                                                        atactattGATATATTTTTTTATTTGTTT‑ATAAT‑A‑ACAAATAAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                 <  2:4496865/121‑1 (MQ=255)
                                                        aaaatatttttttatttttttattttttT‑ATATT‑T‑AAAAATAAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                                 <  2:2930619/116‑1 (MQ=255)
                                                          tatagtttttatttttttttttttttT‑ATATT‑A‑AAAAAAAAAAAAAAAAAAATACACTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                               <  1:1012030/116‑1 (MQ=255)
                                                          actagttatatatttttttattttttT‑ATATT‑A‑AAAAAAAAAAAAAAAAAAAATCCC‑CTTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAATTCTATTTCTTAAAATTCCCTATTATACcac                                                               <  2:3711479/118‑1 (MQ=255)
                                                            tttttttttttttttttATTTTTTT‑TTTTT‑A‑AAAAATAAAAAAAAAAAAATTCCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                           <  2:3798245/118‑1 (MQ=255)
                                                            tagttttCTTTTTTTTTATTTTTTT‑ATATT‑A‑AAAAAAAAAAAAAAAAAAATCCACAT‑‑‑AA‑AAAT‑TTAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                            <  2:1728201/122‑1 (MQ=255)
                                                             tttttaatttttttttATTT‑TTT‑ATAAT‑A‑AAAAAAAAAAAAAAAAAAAAACCCATT‑‑AA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                           <  2:3021414/119‑1 (MQ=255)
                                                             gtttattaattttttaatttttta‑ATATT‑A‑AAAAAAAAAAAAAAAAAAAAACCC‑‑‑TAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                           <  2:3972159/120‑1 (MQ=255)
                                                                   ttatttttttattttttT‑ATCTT‑A‑AAAAATAAAAAAAAAAAAATCCCATT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                    <  1:4361579/127‑1 (MQ=255)
                                                                   aattttttttattttttt‑aTATT‑A‑AAAAAAAAAAAAAAAAAAATACCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                                     <  1:1149412/125‑1 (MQ=255)
                                                                     tattttttATTTGTTT‑ATATT‑A‑AAAAAAAAAAAAAAAAAAAATCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                                   <  1:1094247/126‑1 (MQ=255)
                                                                     gggcgtcagattGTTT‑TTCTT‑G‑ACAAATAAAATAAAAATATTCCCCTTT‑‑‑A‑AAAT‑‑TAAAAATAAAAAAAAAAAAGTAAAAACAATCTCTATTTCTTAAAATTCACTATTATACCACATTTTATTTTTaa                                                  <  2:4037742/118‑1 (MQ=255)
                                                                     aattttttATTTTTTTAATTTT‑A‑AAAAAAAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                    <  1:1663211/126‑1 (MQ=255)
                                                                      tttttttattttttt‑aTCAT‑C‑AAAAATAAAAAAAAAACAAAACAC‑‑TTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                  <  2:1927169/128‑1 (MQ=255)
                                                                      tttttttATTTTTAT‑ATTTT‑A‑AAAAAAAAAAAAAAAAAAAACCC‑‑‑TTAAA‑AATT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                                 <  2:4145653/128‑1 (MQ=255)
                                                                      tttttttATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATACC‑‑ATTAAA‑AATTAAAAAAAAAAAAAAAAAAAAAAAAATAACCA‑‑TCTTTTTCTAAAAATTACATATAAAACCACAATTTATTTTTaa                                                  >  1:4176209/1‑128 (MQ=255)
                                                                      attttttattttttt‑atAAT‑A‑AAAAAAAAAAAAAAAAAAATACCC‑‑ATAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                                    <  2:663911/127‑1 (MQ=255)
                                                                      attttttAATTTTTT‑ATATT‑T‑AAAAAAAAAAAAAAAAAAATCCCATT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                                  <  2:4418944/127‑1 (MQ=255)
                                                                       ttttttATT‑‑TTT‑ATATT‑A‑AAAAAAAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                              <  1:2441229/128‑1 (MQ=255)
                                                                          ttttttTGTTT‑ATATT‑C‑AAAAAAAAAAAAAAAAAAATACCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                              <  1:3006469/128‑1 (MQ=255)
                                                                           ttATTTTTTT‑ATATT‑T‑AAAAATAAAAAAAAAAAAATACCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAACAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                                            <  2:3252203/128‑1 (MQ=255)
                                                                             ttttGTTT‑ATATT‑C‑ACAAATAAAAAAATAA‑AATCAAAAT‑‑‑AA‑AAATT‑‑AAAAAAAAAAAAAAAAAACTAAAAACATACTCTTTTTCTTATAATTCCCTATTATACCACATTTTATTTTTAAAATAAtata                                         <  2:2430584/127‑1 (MQ=255)
                                                                             aattGTTT‑AACAT‑A‑AAAAATAAAAAAAAAAAAAAACCCAT‑‑‑AA‑AAA‑AAAAAAAAAAAAAAAAAAAACCTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                           <  2:1815514/126‑1 (MQ=255)
                                                                               tttttt‑ATATT‑A‑ACAAATAAAAAAAAAAAAATACCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                                         <  2:3554082/125‑1 (MQ=255)
                                                                               ttGTTT‑ATCTTAA‑AAAAAAAAAAAAAAAACAATACCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                                           <  2:2132977/128‑1 (MQ=255)
                                                                                    ttttttattaaaaaaTAAAAAAAAAAAAATCCCATT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                       <  1:496653/116‑1 (MQ=255)
                                                                                     tttataataaaaaaaaaaaaaaaaaaaaaACCCA‑‑TAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACGAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                       <  2:3848094/117‑1 (MQ=255)
                                                                                         tattactatctAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                                <  2:3399438/118‑1 (MQ=255)
                                                                                            ttaaaaaaaaaaaaaaaaaaaaaaCCCTTAAAA‑ATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                                   <  2:2804957/124‑1 (MQ=255)
                                                                                            aaacaAAAAAAAAAAAAAAAAAACCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataat                               <  2:2266303/126‑1 (MQ=255)
                                                                                               caAATAAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTCATTTTTAAAATAAGATATTGACATAatata                            <  2:1088386/128‑1 (MQ=255)
                                                                                                aaaTAAAAAAAAAAAAATACCATT‑‑‑AA‑AAATT‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAACACATTTTATTTTTAAAATAAGATATTGACATAatatata                          <  1:17349/128‑1 (MQ=255)
                                                                                                        aaaaaaCAATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAAAAAAAAAA‑TAAAAACAAAATATTTTTATTAAAATTCCATATTAAACCAAATTTTATTTTTAAAATAATATATTTAAAAAATATaaataaaata                   >  1:3871763/1‑128 (MQ=255)
                                                                                                                 caatccccttaa‑aaattaaaaaAAAAAAAAAAAAAAAATAAAAACAAAAAATATTTATTAAAATAACAATTTATAAAAAATTTTATTTTAAAAAAAATATATTTAAATAATATTTATAAAatatatat              >  1:2117417/11‑128 (MQ=255)
                                                                                                                   tcccaataaa‑aattaaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataa            <  2:2157037/122‑1 (MQ=255)
                                                                                                                    ttacattaa‑aaattaaaaaAAAAAAAAAAAAAAAATAAATACAAACTATATTTATTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATataat           <  2:2857642/121‑1 (MQ=255)
                                                                                                                         ttaa‑aaattaaaaaAAAAAAAAAAAAAAA‑TAAAAAAAAAATATATTTATTAAAATTCCATTTTAAACCAAATTTTATTTTTAAAATAAAATATTGAAATAAAATATAAATAATATATaaaataaaaaa     >  1:3705719/3‑123 (MQ=255)
                                                                                                                         taaa‑aaat‑taaaaaAAAAAAAAAAAAGACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACtata     <  1:3651072/128‑1 (MQ=255)
                                                                                                                           |                                                                                                                                  
ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTT‑ATCTT‑C‑ACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTG  >  CP016816/202370‑202619

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.