Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4970AT48.1% 73.8 / 155.0 293intergenic (+275/‑400)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base A (32/76);  new base T (2/98);  total (36/257)
Fisher's exact test for biased strand distribution p-value = 1.16e-08
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 545 total aligned reads displayed.

ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCTATG  >  CP016816/202370‑202624
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ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGCTCTATTTTTTTATTTGTTTATCTACACAAAA‑AAAAAAAAAACAAACCCCATCaaaaaaaaaa                                                                                                                                  >  1:2894631/1‑128 (MQ=255)
ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCAC‑‑Ttaaaaattaaaa                                                                                                                                >  1:1581529/1‑128 (MQ=255)
   ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCATT‑‑‑AAAAATaaaaaaaa                                                                                                                            >  1:3533305/1‑128 (MQ=255)
    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAAACAAACCCCTT‑‑‑AAAAATaaaaaaaa                                                                                                                            >  1:4192471/1‑128 (MQ=255)
    taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaa                                                                                                                            >  1:3717619/1‑128 (MQ=255)
     atttttAAAGTTAAATTAAAAAAAATAAAATTTATAATTCTTATAATTTTTCACCTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTCACAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaa                                                                                                                           <  1:3610623/124‑1 (MQ=255)
        ttttagtttaattaaAATACAATAAAACTAAAAAATCTTAAAATTTACAAACCCCTTAACTATTTTTTTAATTTTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaa                                                                                                                        <  2:282167/121‑1 (MQ=255)
        gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCAC‑‑‑TAAAAAATtaaaaaaaaaaaa                                                                                                                       >  1:1516758/1‑128 (MQ=255)
         ttAATGTTAATTAAAATAACATAAAATTAAAAATTATTATAATTTATATCCTCGTGATCTATTTTTTTATTTGTTTATATTCAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa                                                                                                                       <  2:3537574/128‑1 (MQ=255)
         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCAATaaaaaaaaaaaaaaaaaaaa                                                                                                                         >  2:4297503/1‑128 (MQ=255)
         ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTATTTATCTTCACAAAT‑AAAAAAAAAACAAACCC‑‑‑ATAAAAAATaaaaaaaaaaaaaa                                                                                                                      >  1:4281435/1‑128 (MQ=255)
          tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATAACC‑‑TTAAAAAATaaaaaaaaaaaaaa                                                                                                                      >  2:213672/1‑128 (MQ=255)
          tAAGGTTAATTAAAATACCATAAACATAATAATTATTAAAATGTAGATCCTCGAGATCTATATTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaata                                                                                                                      >  1:754399/1‑126 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                                     >  1:4414297/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaa                                                                                                                     >  2:4365242/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                                     >  2:4496641/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCAAC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                                     >  2:1898792/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCACCTT‑‑‑AAAAATaaaaaaaaaaaaaaaa                                                                                                                    >  2:4008646/1‑128 (MQ=255)
           aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTCATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAAATaaaaaaaaaaaaaaa                                                                                                                     >  1:468665/1‑128 (MQ=255)
            aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑‑TAAAAAATtaaaaaaaaaaaaaaaa                                                                                                                   >  1:2438559/1‑128 (MQ=255)
             tgTTAAATAAAAATCCAAAAAATTAATAATTTTTATAAAGTATACCCTCGTGATCATTTTTTTTATTTTTTTATCTTCAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                                   <  2:2594895/127‑1 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                                   >  1:4303933/1‑128 (MQ=255)
             ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCTTGATATATTTTTTTATTATTTTATCTTAACAAAT‑AAAAAAAAAAAAA‑‑AACAATTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                                   >  2:2116515/1‑128 (MQ=255)
              gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATTTTTTTATTTAATTATCTTCAAAAAT‑AAAAAAAAAAAAA‑‑‑AAAAATAAAAAATtaaaaaaaaaaaaaaaaaa                                                                                                                 >  1:2615939/1‑128 (MQ=255)
               ttaattaaAAAACAATAAAATTAAATATTTTTTTAATTTATATACTTTTTTTTATTTTTTTTATTTTTTTATTTTAAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaac                                                                                                                 <  1:3797956/128‑2 (MQ=255)
                taattaaAATACCATAAAAATATAAATTATTATAAAGTTTTACCTAGGGATCTATTTTTTTATTTGTTTATCTTCACAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaac                                                                                                                <  1:3557710/128‑2 (MQ=255)
                 aatttaAATAACATAAAATTAATAATTATTATAATTTATATCCTAGTTATATATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAA‑AATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaactaaaa                                                                                                              <  2:4542778/128‑7 (MQ=255)
                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAATAAAC‑‑TTAAAAAATaaaaaaaaaaaaaaaaaaaaa                                                                                                               >  1:23843/1‑128 (MQ=255)
                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                                               >  1:3771777/1‑128 (MQ=255)
                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCAC‑‑TTAAAAAATaaaaaaaaaaaaaaaaaaaaaa                                                                                                              >  2:2324477/1‑127 (MQ=255)
                 aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTATATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaata                                                                                                               >  2:1533141/1‑126 (MQ=255)
                 aattaaAATAACAAAAAATTTATATTTTTTTTAATTTTTATTCTCTTTATTTATTTTTTTATTTTTTTTTATTAAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaac                                                                                                               <  1:4156803/128‑2 (MQ=255)
                  attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaa                                                                                                              >  1:1302124/1‑127 (MQ=255)
                    ataaaTAACATAAAATTAAAAAATATTTAAATTTATATACAAGTTATATATTTTTTTTTTTTTTTATCTTCAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaactaaa                                                                                                            <  2:3677226/126‑6 (MQ=255)
                    aaaaaTACCATAAAATTTATAATTCTTATAATTTAGAAAATCTTGAATTATTTTTTTATTTTTTAAAAATAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaactaaa                                                                                                            <  2:2997211/127‑6 (MQ=255)
                     aaaaTACCATAAACTTAATAATTCTAATAATGTAGATACTCGTTATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAAACCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaacaaaaa                                                                                                           >  1:1946110/1‑122 (MQ=255)
                      aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCAC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                          >  2:548283/1‑123 (MQ=255)
                      aaaTAACAAAAACTTAAAAATTCTTATAATTTTTATACTCGTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaactaaaaa                                                                                                          <  2:3501432/128‑8 (MQ=255)
                       aataaaataatattAATAATTTTTTTAATTTTTATCCTTGTTATATATTTTTTTTTTTTTTTATCTTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAaaac                                                                                                       <  1:1624856/116‑1 (MQ=255)
                          aacttAAAATTTATAATTCTTATAATGTAGATAATAGTTATATATTTTTTTATTTGTTTATATTAAAAAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                                    <  2:1003330/124‑1 (MQ=255)
                          aacATAAAATTAATAATTATTATAATTTATATAATCGTTATTTATTTTTTTATTTTTTTATCTTAAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                                                    <  2:1594418/126‑1 (MQ=255)
                              tAAAATTAAAAATTCTAATAATGTACAACCTCGTGATCAATTTTTTTATTTGTTTAACTTAACAAAT‑AAAAAAAAAACAATCCCCAT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                                <  2:868899/128‑1 (MQ=255)
                              tAAAATTAAAAAATATTAAAATTTATATACAAGAGATATATTTTTTTATTTTTTTAAAATAAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                                                 <  2:1421278/128‑1 (MQ=255)
                               aaaCTTAATAATTATTATATTGTATTTACTTGTTTTATATTTTTTTATTTTTTTAACTTAAAAAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                                                <  1:3934040/128‑1 (MQ=255)
                                aaattAAAAATTATTATAATGTATATACTCGTTATATATTTTTTTATTTTTTTATTTTAAAAAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                                               <  2:1670437/125‑1 (MQ=255)
                                 aatttaaaatTTTTATATTTTTGTTCCTCGTTTTTTTTTTTTTTATTTTTTTTTATTAAAAAAA‑AAAAAAAAAACAAATCCCTT‑‑‑AAAAATTTAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                                              <  1:3006068/121‑1 (MQ=255)
                                                 aaTGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAA‑TAAAAAACAACTATATTTGATAAAAATGCCttt                                                                             >  1:1167506/1‑126 (MQ=255)
                                                   tttAGATCATTGTTAACTATTTTTTTTTTTTTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCATT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt‑at                                                                         <  2:177831/126‑1 (MQ=255)
                                                   attttataatCGTTATTTTTTTTTTTATTTTTTTATTTTTAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt‑a                                                                          <  1:4540869/119‑1 (MQ=255)
                                                        atcatttttatttATTTTTTTTTTTTTTTAAATTAAAAAAA‑AAAAAAAAAAAAATACACTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATAcc                                                                      <  2:3464150/116‑1 (MQ=255)
                                                        atactattttattatttttttattttttTATTTATAAAAAA‑AAAAAAAAAAAAAAACACCTT‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATAcc                                                                      <  2:338982/116‑1 (MQ=255)
                                                        atacaagttatatatttttttattttttTATATTAACAAAT‑AAAAAAAAAAAAATCCACTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACca                                                                     <  2:2918138/116‑1 (MQ=255)
                                                        ataatttttatttatttttttattttttTTTTTTAAAAAAT‑AAAAAAAAAAAAATAACATT‑‑‑AAAAAT‑‑TTAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACcac                                                                    <  1:2116515/116‑1 (MQ=255)
                                                         aacacGTGTTCTTTTTTTTTATTAGTTTAAATTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑‑TAAAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACcac                                                                    <  1:443830/124‑1 (MQ=255)
                                                          tatagtttttatttttttttttttttTATATTAAAAAAA‑AAAAAAAAAAAAATACACTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACcac                                                                    <  1:1012030/116‑1 (MQ=255)
                                                             agttttaaaTTTTTTTAATTGTTTAAAATCAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACattt                                                                <  2:3694975/120‑1 (MQ=255)
                                                               tGATATATTTTTTTATTTGTTTATATTAAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACatttta                                                              <  2:3440143/128‑1 (MQ=255)
                                                                tatatttttttttatttttttaTATAAAAAAAT‑AAAAAAAAAAAAATACCC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACattttat                                                             <  2:4164637/122‑1 (MQ=255)
                                                                 ttatATTTTTTTATTTGTTTATATTAAAAAAA‑AAAAAAAAAACAAAACACTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACattttatt                                                            <  2:3648466/125‑1 (MQ=255)
                                                                   ttatttttttattttttTATTATAAAAAAA‑AAAAAAAAAAAAATAAACTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACattttatttt                                                          <  1:3219680/127‑1 (MQ=255)
                                                                   aattttttttatttttttaTATTAAAAAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACattttatttt                                                          <  1:1149412/125‑1 (MQ=255)
                                                                    ttttttttttttttttTATCTTAACAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTaa                                                       <  1:2268782/126‑1 (MQ=255)
                                                                     tattttttATTTGTTTATATTAAAAAAA‑AAAAAAAAAAAAAATCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTa                                                        <  1:1094247/126‑1 (MQ=255)
                                                                     aTTTTTTTAATTTTTTATATTCAAAAAT‑AAAAAAAAAAAAATAACCAT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTa                                                        <  2:2213937/128‑1 (MQ=255)
                                                                      tttttttatttttttaTCTTAAAAAAT‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTaa                                                       <  2:1132564/128‑1 (MQ=255)
                                                                      attttttatttttttatAATAAAAAAA‑AAAAAAAAAAAAATACCC‑‑ATAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTAttttt                                                         <  2:663911/127‑1 (MQ=255)
                                                                       ttttttttttttttttATTCAAAAAT‑AAAAAAAAAA‑AATACCATT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTaaaa                                                     <  2:3353641/128‑1 (MQ=255)
                                                                       ttttttttttttTATTATTAAAAAAT‑AAAAAAAAAAATATCACCTT‑‑‑AAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTaaa                                                      <  1:3695390/128‑1 (MQ=255)
                                                                       ttttttATTTTTTTAAATTAAAAAAA‑AAAAAAAAAAAAAACACCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTaa                                                       <  2:3656476/128‑1 (MQ=255)
                                                                       ttttttATTTGTTTATCTTCACAAAT‑AAAAAAAAACCAACCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAACA‑TAAACAACAACAGAATTATTTAAAATACCCTTTT‑TTAACACTTTTTTTTTTTaaa                                                      >  1:2348235/1‑128 (MQ=255)
                                                                       ttttttATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑TAAAAAAAAAATTAATTTATT‑AAATTACAAATTAAAACAAAATTTTATTTTTaa                                                       >  1:3992599/1‑128 (MQ=255)
                                                                         ttttATTTTTTTTTCTTAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATa                                                   <  2:3910891/128‑1 (MQ=255)
                                                                           ttATTTTTTTATCTTAACAAAT‑AAAAAAAAAAAAATCACCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAg                                                 <  2:4073829/128‑1 (MQ=255)
                                                                             aTTTTTTTATCTTAAAAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑TTAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGat                                               <  2:2546787/128‑1 (MQ=255)
                                                                             aTTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAA‑‑AAAAACAAACTAAATTTATAAAAATTCCCTATT‑AAACCAATTTTTTTTTTTAAAAAAAAat                                               >  1:3424900/1‑128 (MQ=255)
                                                                              tatttataaattCACAAA‑‑AAAAAAAAAAAAATAACCAATT‑AAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTATTAAAATTCCCTATA‑ATACCACATTTTATTTTTAAAATAAGaa                                               <  2:768797/118‑2 (MQ=255)
                                                                               ttGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCATT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGatat                                             <  2:2762823/128‑1 (MQ=255)
                                                                                  ttttaattaaaaaaT‑AAAAAAAAAAAAAACACCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTg                                           <  2:3862324/117‑1 (MQ=255)
                                                                                   aatataaaaaaaaa‑aaaaaaaaaaaaATACCATT‑‑‑AAAAATT‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGa                                          <  2:4445111/118‑1 (MQ=255)
                                                                                    tataTTAACAAAA‑AAAAAAAAAAAAAACCC‑‑AATAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGa                                          <  2:4204703/128‑1 (MQ=255)
                                                                                    taatttaaaaaaT‑AAAAAAAAAACAATCCAATT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACAAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGACa                                        <  1:3507974/119‑1 (MQ=255)
                                                                                          taaaaaT‑AAAAAAAAAACAA‑CTCCTTT‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAATAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGACataat                                    <  2:1268174/125‑1 (MQ=255)
                                                                                             aaaT‑AAAAAAAAAAAAATACCATT‑‑‑AAAAATT‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATAACACATTTTATTTTTAAAATAAGATATTGACATAatatata                               <  1:17349/128‑1 (MQ=255)
                                                                                               aT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                               <  2:4126298/128‑1 (MQ=255)
                                                                                                aaaaaaaaaaaaaaaaACCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata                               <  2:1057692/126‑1 (MQ=255)
                                                                                                      aaaaaaCAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAA‑‑‑TAAAAAAAAACTATATTTATTAAAATTCCATATT‑ATACAACATTTTTTTTTTAAAATAATATATTGAAATAATATATatataatata                      >  2:3569728/1‑128 (MQ=255)
                                                                                                               cgatccccttaaaaattaaaaaAAAAAAAAAAAAAAACAAAAAACAAACTCAATTTCTTAAAATTACCTATT‑ATACCACATTTTATTTTTAAAAAAAAAAATTGACATAAAAAATATGAAaaatatat                   >  2:4395253/11‑128 (MQ=255)
                                                                                                               aaatacccttaaaaattaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatatat                   <  2:3804957/118‑1 (MQ=255)
                                                                                                                aatccccttaaaaattaaaaaAAAAAAAAAAAAAAA‑TAAAAAAAAAATCTATTTCTTAAAATTAACTTAT‑ATAACACATTTTATTTTTAAAATAAGTTATTGAAATAATATTTATCTAATATTTataa                 >  2:3972438/10‑128 (MQ=255)
                                                                                                                aaaaacccttaaaaaataaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTAAT‑ATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata                  <  1:3869832/118‑1 (MQ=255)
                                                                                                                 tccccttaaaaattaaaaaAAAAAAAAAAAAAAAAAT‑AAAACAAAATATATTTATTAAAATTCAAAAAT‑ATAACAAATTTTATTTTAAAAATAAAATAATTACAAAATATATAAATAAAATATaaaaa                >  2:2401144/6‑127 (MQ=255)
                                                                                                                      ttAAAATTTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTACCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACta            <  2:3114022/128‑1 (MQ=255)
                                                                                                                      cttaaaaattaaaaaAAAAAAAAAAAAAAA‑TAAAAAAAAAGTATATTTCTTAAAATTCCATATT‑TAACCCAATTTTATTTTTAAAAAAAGATATTGAAAAAATAAATATATAATATATAAAAAAatat           >  1:4058185/4‑128 (MQ=255)
                                                                                                                       aataaaaaaaaaaaaaaaaaaaaaaaaaaCTAAAAACAAACTCTAATTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACtat           <  2:2036133/125‑1 (MQ=255)
                                                                                                                        ttaaaaaataaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATAGAACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACtata          <  1:4094770/126‑1 (MQ=255)
                                                                                                                         aaaaattaaaaaAAAAAAAAAAAAAAA‑TAAAAAAAAACAGTTTTTATTAAAATTAACTATT‑ATAACAAATTTTTTTTTTAAAATAATATATTGAAATTAAATATATGTAATATTTATAATAATATAtt        >  2:479430/1‑128 (MQ=255)
                                                                                                                             attaaaaaaaaaaaaaaaaaaaaATAAAAACAAACTATTTTTATTAAAATTCCATATT‑ATAAAAAATTTTATTTTTAAAAAAAAATATTGAAATAATATATATAAAATATATATAATAATATAtttat     >  2:1215864/4‑125 (MQ=255)
                                                                                                                              taaaaaaAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCTa    <  2:3767525/128‑1 (MQ=255)
                                                                                                                               aaaaaaaaaaaaataaaataaTTAAAAA‑AAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGACAAAATATATATCTAATATATATAATACTATATTGCTATg  <  1:1405166/128‑1 (MQ=255)
                                                                                                                               aaaaaaaaaaaaaaaaaaaaaCTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCTAt   <  2:3735975/128‑1 (MQ=255)
                                                                                                                                |                                                                                                                                
ATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATT‑ATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACTATATTGCTATG  >  CP016816/202370‑202624

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑