Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4860T.44.2% 586.7 / inf 478intergenic (+264/‑411)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (41/201);  new base . (99/93);  total (178/300)
Fisher's exact test for biased strand distribution p-value = 1.70e-14
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 524 total aligned reads displayed.

AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATA  >  CP016816/202359‑202606
                                                                                                                                    |                                                                                                                        
 gTTAGTGTAAATAATATAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                         <  1:403930/128‑2 (MQ=255)
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                         >  2:3710645/1‑127 (MQ=255)
 gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCtta                                                                                                                         >  1:3776423/1‑127 (MQ=255)
          aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCttaaaaattaaa                                                                                                                >  1:3537574/1‑118 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑AAC‑AAAT‑AAAAAAAAAAAAATCACC‑‑Taaaaaaataaaa                                                                                                             >  1:4068384/1‑128 (MQ=255)
            taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTATATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAATCACAtt‑‑‑aaaaataaaaaa                                                                                                           >  2:1847429/1‑128 (MQ=255)
               ttttgtttatgTTAATTAAAATAAAAAAAAATTAATAATTT‑TTAT‑AATTTAGATCCTTGTTATCTATTTTTTTATTTGTTTTTTTT‑CAA‑AAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaa                                                                                                         <  1:1591851/118‑1 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑ATAAAAATTaaaaaaaa                                                                                                         >  1:3440143/1‑128 (MQ=255)
                 gagTTAAGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AGTGTAGATCCTCGTGATCTATTTTTTTATTTGATTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAATCAACTaaaaaaaaaaaaaaaaaa                                                                                                         >  2:4057253/1‑128 (MQ=255)
                  atttAAGGTTAATTAAAATACAATAAAATTAAAAAATA‑TTAA‑AAATAATAACCTCGTGTACTATTTTTTTATTTTTTTATAAT‑CAC‑AAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaa                                                                                                      <  2:2085019/126‑1 (MQ=255)
                   ttttagtttaattaaAATACAATAAAACTAAAAAATC‑TTAA‑AATTTACAAACCCCTTAACTATTTTTTTAATTTTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaa                                                                                                     <  2:282167/121‑1 (MQ=255)
                   gTTAAGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAAAACAAACACC‑‑‑TAAAAAATtaaaaaaaaaaa                                                                                                     >  1:4550988/1‑128 (MQ=255)
                   gTTAAGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTAATTTATTAAACAT‑CAC‑AAAT‑AAAAAAAAAACAAACACATTAaaaaaaaaaaaaaaaaaa                                                                                                       >  1:1526830/1‑128 (MQ=255)
                   gTTAAGGTTAATTAAAATAAAATAAAATTAATAATTT‑TTAT‑AATTTTGATTCTTGTGATCTTTTTTTTTATTTGTTTATAAT‑AAC‑AAAT‑AAAAAAAAA‑‑AATCCCC‑‑ATAAAAATTaaaaaaaaaaaaaa                                                                                                   <  2:4146808/128‑1 (MQ=255)
                    ttAAGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAAACCCATT‑‑‑AAAAATaaaaaaaaaaaaaa                                                                                                   >  1:944261/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATAACC‑‑TTAAAAAATaaaaaaaaaaaaaa                                                                                                   >  2:213672/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaa                                                                                                   >  1:3985848/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaa                                                                                                   >  2:4445037/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATACCCTT‑‑‑AAAAATaaaaaaaaaaaaaaa                                                                                                  >  1:441685/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACATAATAATTA‑TTAA‑AATGTAGATCCTCGAGATCTATATTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaata                                                                                                   >  1:754399/1‑126 (MQ=255)
                      aatgataataaaAAAACCATAAACTTAATAATTC‑TTAT‑AATTTATATACTCGTGATCTATTTTTTTATTATTATATATT‑AAA‑AAAT‑AAAAAAAAAACAAGAACC‑‑TTAAAAAGTaaaaaaaataaaaca                                                                                                  >  1:2330278/6‑126 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaa                                                                                                   >  1:3711479/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACCATCACC‑‑‑TAAAAAATtaaaaaaaaaaaaaaa                                                                                                 >  1:4482825/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaa                                                                                                  >  1:1217553/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCACC‑‑ATAAAAATTaaaaaaaaaaaaaaa                                                                                                  >  1:4126298/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAAACCC‑‑AATAAAAATTaaaaaaaaaaaaaaa                                                                                                  >  1:2505206/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                  >  2:4252759/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATAC‑TTAT‑AATGTAGATACACGTGATCTATATTTTAATTAGTTAAACAT‑AAA‑AAAT‑AAAAAAAAAAAAATCAACaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  1:2857642/1‑128 (MQ=255)
                       atgTTAATTAAAATACAATAAAATTAATAATT‑‑TTATAAAATTATATACTCTTTATATATTTTTTTATTTTTTTATATT‑AAC‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                 <  2:4392112/126‑1 (MQ=255)
                       atgTTAATATAAATAAAATAAAATTAATATTTA‑TTTA‑TATTTATATCCTTTTTATATTTTTTTTTATTTTTTTATATT‑AAA‑AAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                 <  1:1757729/126‑1 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                >  1:4282127/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATACAC‑‑‑TAAAAAATtaaaaaaaaaaaaaaaaa                                                                                               >  2:1378431/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAATaaaaaaaaaaaaaaaaaa                                                                                               >  1:3804957/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                >  2:3579041/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTAGTATATCTT‑CAC‑AAAT‑AAAAAAAAAACAA‑‑AACAATAAAAAAATaaaaaaaaaaaaaaaaa                                                                                                >  1:1425756/1‑128 (MQ=255)
                        ggTTAATTAAAAAACCATAAAATTAATAATTC‑TTAA‑AATTTATATCCTCGTTATAAATTTTTTTATTTGTTTATATT‑CAC‑AAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                <  2:3689325/128‑1 (MQ=255)
                         tttaattaaAATACCATAAACTTAATAATAA‑TTAT‑AATGTATATCCTCGTGATCTATTTTTTTATTTTTTTATCTT‑CAA‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaac                                                                                               <  2:3435237/127‑2 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATaaaaaaaaaaaaaaaaaaaaa                                                                                            >  2:2991017/1‑128 (MQ=255)
                           taattaaAATACCATAAAAATATAAATTA‑TTAT‑AAAGTTTTACCTAGGGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaac                                                                                             <  1:3557710/128‑2 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTC‑TTAT‑AATGTATATCATCGTGATATATTTTTATATTAGAATATCTT‑CAC‑AAAT‑AAAAAAAAAACAAT‑‑CAAAAAAAAAAATaaaaaaaaaaaaaaaaaaaaa                                                                                            >  2:1012030/1‑128 (MQ=255)
                             attaaAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:3502955/1‑127 (MQ=255)
                              tataaataaaataAAATTATTAATTT‑TTAT‑AATTTATATAATTGTTTTTTATTTTTTTTTTTTTTTATATT‑AAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaacaga                                                                                          <  2:2613618/125‑5 (MQ=255)
                                aaaaTACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  1:3662396/1‑124 (MQ=255)
                                 aaaTACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                       >  1:1327440/1‑123 (MQ=255)
                                 aaaTACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAAAAATCAC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                       >  2:548283/1‑123 (MQ=255)
                                  aaTACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                      >  1:3866567/1‑128 (MQ=255)
                                  aaTACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAATaaaaaaaa                                                                                      >  2:3650861/1‑128 (MQ=255)
                                   aatacATAAAATTAATAATTA‑TTAT‑AAATTATTTACAAGTGATTAATTTTTTTTTTTTTTTAAATT‑AAA‑AAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAaaaca                                                                                   <  2:1113819/124‑1 (MQ=255)
                                      ccATAAACTTAATAAATC‑TTAT‑AATTTATAACCTCGTTATCTATTTTTTTATTTTTTTAAATT‑AAA‑AAAT‑AAAAAAAAAACAATACCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAAct                                                                               <  2:3668386/128‑1 (MQ=255)
                                        aTAAAATTAATAATTA‑TTAA‑AATTAAAATACACTTTATATATTTTTTTATTTTTTTATATT‑AAA‑AAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                              <  2:754566/128‑1 (MQ=255)
                                         tAAAATTAAAAATTC‑TAAT‑AATGTACAACCTCGTGATCAATTTTTTTATTTGTTTAACTT‑AAC‑AAAT‑AAAAAAAAAACAATCCCCAT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                             <  2:868899/128‑1 (MQ=255)
                                          taatattataatTT‑TTTT‑AATGTATATTCTACTTAAATATTTTTTTATTTTTTATTCTT‑AAC‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                            <  2:1256252/121‑1 (MQ=255)
                                          aaaattaaaaatta‑TTAA‑AATGTTAATCCACTTTATCATTTTTTTTATTTTTTTATATT‑AAA‑AAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                            <  2:3895015/128‑1 (MQ=255)
                                          aaaCTTAATAATTA‑TTAT‑ATTGTATTTACTTGTTTTATATTTTTTTATTTTTTTAACTT‑AAA‑AAAT‑AAAAAAAAAAAAAACCCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAActct                                                                             <  1:3934040/128‑1 (MQ=255)
                                               taataaATCTTTAA‑AATG‑AGATACCCCTGTTCTATTTTTTTTTTTTTTAATAAA‑CACAAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAtt                                                                          <  2:4201006/128‑1 (MQ=255)
                                                  taatTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAATAAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAAacacacaaaattataaa                                                                       >  1:2395707/1‑116 (MQ=255)
                                                   aatTT‑TTAT‑AATGTATATCCTAGTGATATATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaa                                                                   <  2:2260658/128‑1 (MQ=255)
                                                              aaTTTAGATAATAGTTATATAATTTTTTATTTTTTTATAAT‑AAA‑AAAA‑AAAAAAAAAAAAATAACC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtat                                                          <  2:4096506/128‑1 (MQ=255)
                                                                tttatctCCTCGTGATTTATTTTTTTATTTGTTTATATT‑CAC‑AAAT‑AAAAAAAAACAAATCCCCTT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATtata                                                      <  1:3415405/122‑1 (MQ=255)
                                                                attatctCCTCGTGATCTATTTTTTTTTTTTTTTATCTT‑AAC‑AAAT‑AAAAAAAAAACAAACCCC‑‑ATAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatta                                                        <  2:4489606/122‑1 (MQ=255)
                                                                 tttaaTCCTAGTGATTTTATTTTTTATTTTTTATTTTT‑AAA‑AAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                       <  1:307779/124‑1 (MQ=255)
                                                                  aataTCCTAGTTAACAATTTTTTAATTTTTATAAAAT‑AAA‑AAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTAAtata                                                      <  2:312788/125‑1 (MQ=255)
                                                                   caatactagTGATATATTTTTTTATTTTTTAATATT‑ACA‑AAAA‑AAAAAAAAAACAAAACCCAT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                    <  2:3336203/120‑1 (MQ=255)
                                                                     atcatttttatttATTTTTTTTTTTTTTTAAATT‑AAA‑AAAA‑AAAAAAAAAAAAATACACTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                    <  2:3464150/116‑1 (MQ=255)
                                                                     atacaagttatatatttttttattttttTATATT‑AAC‑AAAT‑AAAAAAAAAAAAATCCACTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                   <  2:2918138/116‑1 (MQ=255)
                                                                      ttatttttttaaatttttttatttttttATATT‑AAA‑AAAA‑AAAAAAAAAAAAAAAAACCTT‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                   <  1:4222542/116‑1 (MQ=255)
                                                                      taaaagttatatatttttttattttttTATAAT‑AAC‑AAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                  <  2:3378108/117‑1 (MQ=255)
                                                                       tatagtttttatttttttttttttttTATATT‑AAA‑AAAA‑AAAAAAAAAAAAATACACTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                  <  1:1012030/116‑1 (MQ=255)
                                                                         tttttttttttttttttATTTTTTTTTTTT‑AAA‑AAAT‑AAAAAAAAAAAAATTCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                              <  2:3798245/118‑1 (MQ=255)
                                                                         tttttatttATTTTTTTTTTTTTTTATATT‑AAA‑AAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                               <  1:213672/120‑1 (MQ=255)
                                                                          gtttattaattttttaattttttaATATT‑AAA‑AAAA‑AAAAAAAAAAAAAAACCC‑‑‑TAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                              <  2:3972159/120‑1 (MQ=255)
                                                                           ttttttttattttttttttttttATATT‑TAA‑AAAA‑AAAAAAAAAAAAAAACCATT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                             <  2:3723866/119‑1 (MQ=255)
                                                                            ttttttatttttttattttttTATATT‑AAA‑AAAA‑AAAAAAAAAAAAAAAACCAT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttta                                            <  1:2001045/123‑1 (MQ=255)
                                                                             gATCTATTTTTTAATTTTTTTATCTT‑CAA‑AAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttat                                           <  2:1658142/128‑1 (MQ=255)
                                                                              atatATTTTTTTTTTTTTTTATATT‑AAA‑AAAT‑TAAAAAAAAAAAATACCCAT‑‑‑AAAAAT‑‑‑TAAAAAAAAAAAAAAAAACTAACAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                        <  2:3549793/125‑1 (MQ=255)
                                                                                ttatttttttattttttTATCTT‑AAA‑AAAT‑AAAAAAAAAAAAATCCCATT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                       <  1:4361579/127‑1 (MQ=255)
                                                                                atttttttttATTTTTTTTAATT‑AAA‑AAAA‑AAAAAAAAAAAAATCCACTT‑‑‑ATAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                        <  2:2789934/125‑1 (MQ=255)
                                                                                aattttttttatttttttaTATT‑AAA‑AAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                        <  1:1149412/125‑1 (MQ=255)
                                                                                 tATTTTTTTATTTGTTTATATT‑AAC‑AAAT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                      <  1:1666084/128‑1 (MQ=255)
                                                                                  tattttttATTTGTTTATATT‑AAA‑AAAA‑AAAAAAAAAAAAAATCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                      <  1:1094247/126‑1 (MQ=255)
                                                                                   tttttttATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATACC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAATAACCA‑‑TCTTTTTCTAAAAATTACATATAAAACCACAATTTATTTTTaa                                     >  1:4176209/1‑128 (MQ=255)
                                                                                   attttttatttttttatAAT‑AAA‑AAAA‑AAAAAAAAAAAAATACCC‑‑ATAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                       <  2:663911/127‑1 (MQ=255)
                                                                                     ttttttttTGTTTTTTTTATAT‑AAAA‑AAAAAAAAAACAAGCCC‑‑‑TT‑AAAAATTAAAAAAAAAACAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                    <  2:2325103/128‑1 (MQ=255)
                                                                                     tttttATTTTTTTATAAT‑AAC‑AAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                    <  2:1175115/128‑1 (MQ=255)
                                                                                        ttATTTTTTTAAATT‑AAA‑AAAT‑AAAAAAAAAAAAAT‑‑AAAATTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAAt                                  <  2:4019490/128‑1 (MQ=255)
                                                                                        atATTTTTTTATAAT‑AAA‑AAAA‑AAAAAAAAAACAATACCATT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAAATCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                <  2:4528116/127‑1 (MQ=255)
                                                                                         ttattGTTTATATT‑AAA‑AAAA‑AAAAAAAAAACAATCACATT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                              <  2:461539/125‑1 (MQ=255)
                                                                                         tATTTTTTTATATT‑AAA‑AAAT‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAg                               <  2:430960/128‑1 (MQ=255)
                                                                                          tttttttTATATT‑CAA‑AAAA‑AAAAAAAAAACAATCCCCAT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                              <  1:3524215/127‑1 (MQ=255)
                                                                                          ttttGTTTATATT‑CAC‑AAAT‑AAAAAAATAA‑AATCAAAAT‑‑‑AAAAATT‑‑AAAAAAAAAAAAAAAAAACTAAAAACATACTCTTTTTCTTATAATTCCCTATTATACCACATTTTATTTTTAAAATAAtata                            <  2:2430584/127‑1 (MQ=255)
                                                                                          aTTTTTTTATCTT‑AAA‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑TTAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat                             <  2:2546787/128‑1 (MQ=255)
                                                                                             tttttATATT‑TAA‑AAAA‑AAAAAAAAAAAAAAACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                            <  1:3749917/126‑1 (MQ=255)
                                                                                              ttttATTTT‑AAA‑AAAT‑AAAAAAAAAAAAATTCCC‑‑TTAAAAAAT‑‑TAAAAAAAAAAAAAAAAATTTAAATACTAACTCTATTTCTTAAATTTCACTATTATACCACATTTTATTTTTAAAATAAGATAtt                          <  1:2990934/127‑1 (MQ=255)
                                                                                                ttttttattaaaaaaT‑AAAAAAAAAAAAATCCCATT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                          <  1:496653/116‑1 (MQ=255)
                                                                                                ttATATT‑AAA‑AAAA‑AAAAAAAAAACAATCCCATT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                       <  2:1526830/128‑1 (MQ=255)
                                                                                                 tttataataaaaaaa‑aaaaaaaaaaaaaaACCCA‑‑TAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACGAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                          <  2:3848094/117‑1 (MQ=255)
                                                                                                   aaatatac‑aAAA‑AAAAAAAAAAAAAAACCC‑‑ATAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                       <  2:2122535/122‑1 (MQ=255)
                                                                                                       ttaaaaaaa‑aaaaaaaaaaaaATACAC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa                   <  2:1732924/123‑1 (MQ=255)
                                                                                                             aaT‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata             <  2:1581529/128‑1 (MQ=255)
                                                                                                                   aaaaaaaaCAATACCATT‑‑‑AAAAATT‑AAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTaa        <  1:236473/128‑1 (MQ=255)
                                                                                                                                    |                                                                                                                        
AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTC‑TTAT‑AATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTT‑CAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATA  >  CP016816/202359‑202606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑