mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 252 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 3,559,238 | 0 | T | C | 56.4% | 207.7 / inf | 536 | intergenic (‑395/‑429) | ykgL/ecpR | hypothetical protein/helix‑turn‑helix transcriptional regulator |
| * | DH1 | 3,184,649 | 0 | A | G | 55.1% | 36.8 / inf | 334 | noncoding (35/75 nt) | ECDH1_RS15800 | tRNA‑TERM |
| * | DH1 | 4,165,322 | 0 | A | G | 54.9% | 191.7 / inf | 576 | pseudogene (50/129 nt) | dcuR | glutamate decarboxylase |
| * | DH1 | 613,267 | 0 | A | G | 54.0% | 101.9 / inf | 423 | intergenic (+128/+895) | garK/yhaC | glycerate 2‑kinase/pentapeptide repeats‑related protein |
| * | DH1 | 3,557,412 | 0 | T | C | 53.8% | 110.2 / inf | 463 | intergenic (‑814/‑301) | ECDH1_RS17595/ykgR | attachment protein/hypothetical protein |
| * | DH1 | 4,026,783 | 0 | A | G | 53.5% | 133.3 / inf | 560 | C269R (TGT→CGT) | lptF | LPS export ABC transporter permease LptF |
| * | DH1 | 1,060,475 | 0 | A | G | 53.4% | 120.1 / inf | 471 | D161G (GAC→GGC) | recA | DNA recombination/repair protein RecA |
| * | DH1 | 4,081,122 | 0 | A | G | 53.4% | 113.1 / inf | 502 | D189G (GAC→GGC) | qorB | NAD(P)‑dependent oxidoreductase |
| * | DH1 | 4,111,571 | 0 | A | G | 53.2% | 102.8 / inf | 496 | C325R (TGT→CGT) | hflK | protease modulator HflK |
| * | DH1 | 3,542,956 | 0 | T | C | 53.2% | 70.6 / inf | 436 | S245S (TCT→TCC) | betB | betaine‑aldehyde dehydrogenase |
| * | DH1 | 4,245,021 | 0 | A | G | 53.2% | 90.0 / inf | 456 | C12C (TGT→TGC) | aphA | acid phosphatase AphA |
| * | DH1 | 1,831,549 | 0 | A | C | 53.0% | 217.3 / inf | 456 | V523V (GTT→GTG) | yeeJ | inverse autotransporter adhesin‑like protein YeeJ |
| * | DH1 | 792,795 | 0 | T | C | 52.9% | 88.6 / inf | 525 | K208E (AAG→GAG) | endA | deoxyribonuclease I |
| * | DH1 | 2,476,585 | 0 | T | C | 52.8% | 63.2 / inf | 414 | pseudogene (1363/1446 nt) | abgA | peptidase M20 |
| * | DH1 | 762,730 | 0 | G | A | 52.6% | 111.0 / inf | 481 | V83I (GTT→ATT) | glcA | glycolate permease GlcA |
| * | DH1 | 3,553,167 | 0 | A | G | 52.6% | 91.5 / inf | 494 | T178A (ACG→GCG) | rclC | protein RclC |
| * | DH1 | 3,874,789 | 0 | T | C | 52.6% | 77.7 / inf | 545 | L21L (TTA→TTG) | creD | protein CreD |
| * | DH1 | 2,732,543 | 0 | A | G | 52.4% | 72.0 / inf | 495 | S135P (TCG→CCG) | yceD | hypothetical protein |
| * | DH1 | 3,869,474 | 0 | T | C | 52.4% | 60.8 / inf | 478 | K523E (AAA→GAA) | thrA | bifunctional aspartate kinase/homoserine dehydrogenase I |
| * | DH1 | 2,999,588 | 0 | A | T | 52.4% | 92.2 / inf | 380 | F269I (TTC→ATC) | dacC | D‑alanyl‑D‑alanine carboxypeptidase |
| Marginal new junction evidence (lowest skew 10 of 67 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | 1586746 = | NA (NA) | 382 (0.800) | 162/292 | 3.1 | 57.7% | noncoding (1/1198 nt) | repeat_region | repeat region |
| ? | DH1 | = 1971030 | 280 (0.590) | coding (144/144 nt) | yobF | DUF2527 domain‑containing protein | |||||
| * | ? | DH1 | = 300335 | NA (NA) | 279 (0.570) | 167/300 | 3.1 | 50.4% | noncoding (772/773 nt) | repeat_region | repeat region |
| ? | DH1 | 490607 = | 274 (0.560) | coding (3102/3801 nt) | yhdP | DUF3971 domain‑containing protein | |||||
| * | ? | DH1 | = 3575873 | 252 (0.520) | 249 (0.520) | 160/292 | 3.3 | 50.6% | noncoding (3/1201 nt) | repeat_region | repeat region |
| ? | DH1 | 3577073 = | 241 (0.510) | intergenic (+151/‑282) | insH1/yagM | transposase/hypothetical protein | |||||
| * | ? | DH1 | = 2201911 | 194 (0.400) | 249 (0.510) | 163/300 | 3.5 | 66.9% | coding (1337/1533 nt) | pntA | NAD(P) transhydrogenase subunit alpha |
| ? | DH1 | 2204947 = | 52 (0.110) | intergenic (‑382/‑30) | tqsA/mdtJ | AI‑2 transporter TqsA/spermidine export protein MdtJ | |||||
| * | ? | DH1 | 3203897 = | 317 (0.650) | 231 (0.500) | 153/284 | 3.6 | 44.4% | coding (512/708 nt) | ybeR | hypothetical protein |
| ? | DH1 | = 3203926 | 279 (0.600) | coding (483/708 nt) | ybeR | hypothetical protein | |||||
| * | ? | DH1 | = 4079176 | 279 (0.570) | 228 (0.490) | 152/284 | 3.7 | 46.1% | noncoding (1/771 nt) | repeat_region | repeat region |
| ? | DH1 | 4079953 = | 269 (0.580) | intergenic (+24/+135) | insB1/ytfH | transposase/HxlR family transcriptional regulator | |||||
| * | ? | DH1 | = 1702500 | 261 (0.530) | 236 (0.500) | 157/292 | 3.7 | 48.0% | noncoding (5/1205 nt) | repeat_region | repeat region |
| ? | DH1 | 1703700 = | 257 (0.540) | noncoding (1205/1205 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 2678609 | 234 (0.480) | 246 (0.520) | 156/292 | 3.8 | 49.8% | noncoding (1/1259 nt) | repeat_region | repeat region |
| ? | DH1 | 2679871 = | 269 (0.570) | intergenic (‑69/+280) | insE1/lit | transposase/bacteriophage T4 late gene expression‑blocking protein | |||||
| * | ? | DH1 | = 2788747 | 252 (0.520) | 221 (0.470) | 153/292 | 4.2 | 49.2% | noncoding (5/1206 nt) | repeat_region | repeat region |
| ? | DH1 | 2789947 = | 211 (0.440) | noncoding (1205/1206 nt) | repeat_region | repeat region | |||||
| * | ? | DH1 | = 1967355 | 225 (0.460) | 208 (0.450) | 148/286 | 4.4 | 48.2% | noncoding (6/1206 nt) | repeat_region | repeat region |
| ? | DH1 | 1968555 = | 232 (0.500) | noncoding (1206/1206 nt) | repeat_region | repeat region | |||||