mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.28.1 revision 52323b585d6f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| JC | 2,204,804 | Δ120 bp | intergenic (‑239/‑54) | tqsA ← / → mdtJ | AI‑2 transporter TqsA/spermidine export protein MdtJ |
| RA | 3,668,924 | (T)5→6 | pseudogene (353/455 nt) | lpxA ← | hydroxymyristoyl‑ACP dehydratase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | DH1 | 2201821 | 2204955 | 3135 | 332 [330] | [331] 332 | [pntA]–tqsA | [pntA], pntB, tqsA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | DH1 | = 2478888 | 228 (0.470) | 234 (0.500) | 162/290 | 3.0 | 47.9% | noncoding (5/1204 nt) | repeat_region | repeat region |
| ? | DH1 | 2480088 = | 289 (0.610) | intergenic (‑73/‑63) | insH1/fnr | transposase/fumarate and nitrate reduction regulatory protein | |||||
| * | ? | DH1 | 3970034 = | 292 (0.600) | 307 (0.670) | 178/282 | 1.2 | 50.9% | intergenic (‑120/‑94) | fimA/ECDH1_RS19620 | type‑1 fimbrial protein, A chain/hypothetical protein |
| ? | DH1 | 3970348 = | 317 (0.690) | intergenic (+32/+48) | ECDH1_RS19620/fimE | hypothetical protein/tyrosine recombinase | |||||
| * | ? | DH1 | = 3970042 | 293 (0.600) | 301 (0.660) | 176/282 | 1.3 | 50.4% | intergenic (‑128/‑86) | fimA/ECDH1_RS19620 | type‑1 fimbrial protein, A chain/hypothetical protein |
| ? | DH1 | = 3970338 | 317 (0.690) | intergenic (+22/+58) | ECDH1_RS19620/fimE | hypothetical protein/tyrosine recombinase | |||||
| * | ? | DH1 | = 3970987 | 223 (0.460) | 296 (0.650) | 177/282 | 1.2 | 55.8% | intergenic (‑37/+16) | fimE/insB1 | tyrosine recombinase/transposase |
| ? | DH1 | 3971764 = | 260 (0.570) | intergenic (‑258/+482) | insB1/fimB | transposase/tyrosine recombinase | |||||
| * | ? | DH1 | = 4493676 | 235 (0.480) | 265 (0.540) | 173/300 | 2.5 | 52.3% | coding (569/1641 nt) | ubiB | ubiquinone biosynthesis protein UbiB |
| ? | DH1 | 4493689 = | 249 (0.510) | coding (556/1641 nt) | ubiB | ubiquinone biosynthesis protein UbiB | |||||
| * | ? | DH1 | = 4549889 | 276 (0.570) | 268 (0.570) | 174/290 | 1.8 | 50.1% | coding (1050/1266 nt) | rhlB | ATP‑dependent RNA helicase RhlB |
| ? | DH1 | 4549896 = | 266 (0.560) | coding (1057/1266 nt) | rhlB | ATP‑dependent RNA helicase RhlB | |||||