mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_pae_pgi | 526,792 | 0 | A | C | 34.9% | 72.6 / 81.3 | 85 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,796 | 0 | C | G | 34.5% | 113.5 / 81.8 | 84 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 526,800 | 0 | A | G | 30.0% | 120.4 / 54.6 | 81 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_pae_pgi | 4,295,320 | 0 | C | T | 22.4% | 126.0 / 36.4 | 77 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 3699911 | 65 (1.090) | 6 (0.110) | 6/260 | 6.7 | 8.8% | intergenic (+18/+69) | bcsG/ldrD | DUF3260 family cellulose production inner membrane protein/toxic polypeptide, small |
| ? | NC_000913_3_pae_pgi | = 3699921 | 63 (1.130) | intergenic (+28/+59) | bcsG/ldrD | DUF3260 family cellulose production inner membrane protein/toxic polypeptide, small | |||||
| * | ? | NC_000913_3_pae_pgi | 4137898 = | 67 (1.130) | 5 (0.090) | 5/256 | 7.1 | 7.4% | intergenic (‑241/+34) | yijF/gldA | DUF1287 family protein/glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase |
| ? | NC_000913_3_pae_pgi | 4137925 = | 63 (1.150) | intergenic (‑268/+7) | yijF/gldA | DUF1287 family protein/glycerol dehydrogenase, NAD+ dependent; 1,2‑propanediol:NAD+ oxidoreductase | |||||
| * | ? | NC_000913_3_pae_pgi | 1354213 = | 68 (1.140) | 5 (0.090) | 5/264 | 7.3 | 7.2% | coding (306/891 nt) | sapC | antimicrobial peptide transport ABC transporter permease |
| ? | NC_000913_3_pae_pgi | 1354235 = | 64 (1.130) | coding (284/891 nt) | sapC | antimicrobial peptide transport ABC transporter permease | |||||
| * | ? | NC_000913_3_pae_pgi | = 517451 | 79 (1.330) | 5 (0.090) | 5/266 | 7.4 | 6.2% | coding (829/855 nt) | ybbN | DnaK co‑chaperone, thioredoxin‑like protein |
| ? | NC_000913_3_pae_pgi | = 517463 | 77 (1.350) | coding (817/855 nt) | ybbN | DnaK co‑chaperone, thioredoxin‑like protein | |||||
| * | ? | NC_000913_3_pae_pgi | = 309276 | 79 (1.330) | 5 (0.090) | 5/270 | 7.4 | 5.9% | coding (57/2526 nt) | ecpC | ECP production outer membrane protein |
| ? | NC_000913_3_pae_pgi | = 309298 | 83 (1.440) | coding (35/2526 nt) | ecpC | ECP production outer membrane protein | |||||
| * | ? | NC_000913_3_pae_pgi | = 3037825 | 49 (0.820) | 5 (0.080) | 5/278 | 7.6 | 8.8% | coding (282/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific |
| ? | NC_000913_3_pae_pgi | = 3037851 | 54 (0.910) | coding (256/1734 nt) | recJ | ssDNA exonuclease, 5' ‑‑> 3'‑specific | |||||
| * | ? | NC_000913_3_pae_pgi | = 2443834 | NA (NA) | 6 (0.100) | 5/276 | 7.6 | NA | noncoding (46/80 nt) | REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP171 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913_3_pae_pgi | = 2443869 | NA (NA) | intergenic (+99/+22) | mnmC/yfcL | fused 5‑methylaminomethyl‑2‑thiouridine‑forming enzyme methyltransferase and FAD‑dependent demodification enzyme/uncharacterized protein | |||||
| * | ? | NC_000913_3_pae_pgi | = 3727891 | 53 (0.890) | 4 (0.070) | 4/262 | 7.8 | 7.4% | intergenic (‑143/+26) | yiaB/xylB | YiaAB family inner membrane protein/xylulokinase |
| ? | NC_000913_3_pae_pgi | = 3727905 | 50 (0.890) | intergenic (‑157/+12) | yiaB/xylB | YiaAB family inner membrane protein/xylulokinase | |||||
| * | ? | NC_000913_3_pae_pgi | = 1870252 | 46 (0.770) | 4 (0.070) | 4/258 | 7.8 | 8.2% | intergenic (+14/‑133) | yeaH/yeaI | UPF0229 family protein/putative membrane‑anchored diguanylate cyclase |
| ? | NC_000913_3_pae_pgi | = 1870261 | 47 (0.850) | intergenic (+23/‑124) | yeaH/yeaI | UPF0229 family protein/putative membrane‑anchored diguanylate cyclase | |||||
| * | ? | NC_000913_3_pae_pgi | = 427762 | 81 (1.360) | 4 (0.070) | 4/264 | 7.9 | 5.1% | coding (116/1848 nt) | secD | SecYEG protein translocase auxillary subunit |
| ? | NC_000913_3_pae_pgi | = 427779 | 72 (1.280) | coding (133/1848 nt) | secD | SecYEG protein translocase auxillary subunit | |||||