New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 1870252	46 (0.770)	4 (0.070)	4/258	7.8	8.2%	intergenic (+14/‑133)	yeaH/yeaI	UPF0229 family protein/putative membrane‑anchored diguanylate cyclase
	?	NC_000913_3_pae_pgi	= 1870261	47 (0.850)					intergenic (+23/‑124)	yeaH/yeaI	UPF0229 family protein/putative membrane‑anchored diguanylate cyclase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACATTGTGGCGAGAATATGAGCATCTGCAATCTACTTTCGACAACTTTGCGATGCAGCACATCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAACCTTTACATAATTTAGTTCCAGAAAACAATCATTCGGAAAAATGATTCAGTCAAC  >  NC_000913_3_pae_pgi/1870104‑1870398                                                                                                                                                     |                                                                                                                                                   aCATTGTGGCGAGAATATGAGCATCTGCAATCTACTTTCGACAACTTTGCGATGCAGCACATCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAgg                                                                                                                                                    >  1:105211/1‑149 (MQ=255)          cGAGAATATGAGCATCTGCAATCTACTTTCGACAACTTTGCGATGCAGCACATCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCg                                                                                                                                           >  1:413805/1‑149 (MQ=255)            agaATATGAGCATCTGCAATCTACTTTCGACAACTTTGCGATGCAGCACATCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGcc                                                                                                                                         <  2:105211/149‑1 (MQ=255)                     gCATCCGCAATCAACTTTCTAAAACTTTTCGATGCAGCACATCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGAtt                                                                                                                                <  1:697131/149‑1 (MQ=255)                       aTCTGCAATCTACTTTCGACAACTTTGCGATGCAGCACATCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGAtttt                                                                                                                              <  1:583949/149‑1 (MQ=255)                                    tttCGACAACTTTGCGATGCAGCACATCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTaa                                                                                                                 >  2:493058/1‑149 (MQ=255)                                    tttCGACAACTTTGCGATGCAGCACATCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTaa                                                                                                                 >  1:582319/1‑149 (MQ=255)                                         aCAACTGTGCGATGCAGCACATCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTAt                                                                                                            <  1:216738/149‑1 (MQ=255)                                           aaCTTTGCGATGCAGCACATCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTAtct                                                                                                          <  1:144606/149‑1 (MQ=255)                                           aaCTTTGCGATGCAGCACATCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTAtct                                                                                                          <  1:29333/149‑1 (MQ=255)                                              tttGCGATGCAGCACATCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCAt                                                                                                       <  1:986023/149‑1 (MQ=255)                                                   gATGCAGCACATCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCacctcat                                                                                                  >  2:532625/1‑143 (MQ=255)                                                   gATGCAGCACATCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATttatt                                                                                                  <  1:636072/149‑1 (MQ=255)                                                    aTGCAGCACATCCGCCCCCGGGAGGATATTTATCCGGTGTTCCGTGAACCGTTTCATAAACAAAATGCAACAGCTAAAGTCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATttatta                                                                                                 <  1:20707/149‑1 (MQ=255)                                                         gcaCATCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATtacatac                                                                                            >  1:172058/1‑149 (MQ=255)                                                         gcaCATCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATtacatac                                                                                            >  1:640507/1‑149 (MQ=255)                                                            caTCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTaaa                                                                                                                <  2:375072/126‑1 (MQ=255)                                                            caTCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTaaa                                                                                                                >  1:375072/1‑126 (MQ=255)                                                            caTCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACAtt                                                                                         >  2:861928/1‑149 (MQ=255)                                                            caTCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACAtt                                                                                         <  2:685455/149‑1 (MQ=255)                                                             aTCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCTTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATtacatgttttt                                                                                        >  2:730295/1‑143 (MQ=255)                                                               ccGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGc                                                                                      >  1:414026/1‑149 (MQ=255)                                                                         gatgatATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAATGCTAAAACTATACGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTTTAAATTATCTCATTTATTACATACATTAGCTTACAATCGc                                                                            >  1:222622/1‑149 (MQ=255)                                                                            gatATTTATCCGGTGTTCCGTGGACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCttt                                                                         <  1:507903/149‑1 (MQ=255)                                                                                    tCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGa                                                                 >  1:175206/1‑149 (MQ=255)                                                                                              cGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCGTACTTTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAAcc                                                       <  1:739169/149‑1 (MQ=255)                                                                                                       tttCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAACCTTTACATat                                              >  2:1046369/1‑148 (MQ=255)                                                                                                       tttCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAACCTTTACATaa                                              >  1:838193/1‑149 (MQ=255)                                                                                                                cAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGc                                                                                                                          <  1:705240/64‑1 (MQ=255)                                                                                                                cAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGc                                                                                                                          >  2:705240/1‑64 (MQ=255)                                                                                                                 aaaaTGCAACATCTAAAGGCTAAAACTATCAGCTAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAACCTTTACATAATTTAGTTCCa                                    <  1:155898/149‑1 (MQ=255)                                                                                                                       cAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAACCTTTACATAATTTAGTTCCAGAAAAc                              <  1:703529/149‑1 (MQ=255)                                                                                                                        aaCAGCTCAAGGCTAAAAGTATCCGCCAGGTCATTATCGCCTGGCTGATTTTTAGGTTACTGTAAATTATCTCATTTAATACATACATTAGCTTACAATCGCTTTAAATATAACAGCATAACCTCTACATAGTTTAGTTCCAGAAAACa                             >  1:970795/1‑149 (MQ=255)                                                                                                                         aCAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAACCTTTACATAATTTAGTTCCAGAAAACaa                            >  1:1042790/1‑149 (MQ=255)                                                                                                                                   gCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAACCTTTACATAATTTAGTTCCAGAAAACAATCATTCGGaa                  >  1:550341/1‑149 (MQ=255)                                                                                                                                      aaaaCTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAACCTTTACATAATTTAGTTCCAGAAAACAATCATTCGGaaaaa               <  1:493058/149‑1 (MQ=255)                                                                                                                                           tATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAACCTTTACATAATTTAGTTCCAGAAAACAATCATTCGGAAAAATGAtt          <  1:64698/149‑1 (MQ=255)                                                                                                                                           tATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAACCTTTACATAATTTAGTTCCAGAAAACAATCATTCGGAAAAATGAtt          <  1:532625/149‑1 (MQ=255)                                                                                                                                           tATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAACCTTTACATAATTTAGTTCCAGAAAACAATCATTCGGAAAAATGAtt          >  2:413881/1‑149 (MQ=255)                                                                                                                                           tATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAACCTTTACATAATTTAGTTCCAGAAAACAATCATTCGGAAAAATGAtt          >  2:414060/1‑149 (MQ=255)                                                                                                                                               aGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATtaca                                                                                               >  2:158782/1‑60 (MQ=255)                                                                                                                                               aGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATtaca                                                                                               <  1:158782/60‑1 (MQ=255)                                                                                                                                               aGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAACCTTTACATAATTTAGTTCCAGAAAACAATCATTCGGAAAAATGATTCAGt      >  1:835694/1‑149 (MQ=255)                                                                                                                                                gCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAACCTTTACATAATTTAGTTCCAGAAAACAATCATTCGGAAAAATGATTCAGTc     <  1:861928/149‑1 (MQ=255)                                                                                                                                                 ccAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAACCTTTACATAATTTAGTTCCAGAAAACAATCATTCGGAAAAATGATTCAGTCa    <  1:414060/149‑1 (MQ=255)                                                                                                                                                 ccAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAACCTTTACATAATTTAGTTCCAGAAAACAATCATTCGGAAAAATGATTCAGTCa    <  1:413881/149‑1 (MQ=255)                                                                                                                                                   aGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAACCTTTACATAATTTAGTTCCAGAACACAATCATCCTGAAAGATGATTCGGGCaag  >  1:191860/1‑148 (MQ=255)                                                                                                                                                     |                                                                                                                                                   ACATTGTGGCGAGAATATGAGCATCTGCAATCTACTTTCGACAACTTTGCGATGCAGCACATCCGCGACCAGGATGATATTTATCCGGTGTTCCGTGAACTGTTTCATAAACAAAATGCAACAGCTAAAGGCTAAAACTATCAGCCAGGTCATTATCGCCTGGCTGATTTTTAGCTTACTGTAAATTATCTCATTTATTACATACATTAGCTTACAATCGCTTTAAATATGACAGCATAACCTTTACATAATTTAGTTCCAGAAAACAATCATTCGGAAAAATGATTCAGTCAAC  >  NC_000913_3_pae_pgi/1870104‑1870398

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.