New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	= 427762	81 (1.360)	4 (0.070)	4/264	7.9	5.1%	coding (116/1848 nt)	secD	SecYEG protein translocase auxillary subunit
	?	NC_000913_3_pae_pgi	= 427779	72 (1.280)					coding (133/1848 nt)	secD	SecYEG protein translocase auxillary subunit
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAAAATTTTTCCCTAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGTTGCGCGCT  >  NC_000913_3_pae_pgi/427621‑427907                                                                                                                                              |                                                                                                                                                  tAAAATTTTTCCCTAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTGGGTGAGTATCCGGCTGTTCAGATCACTGGTgcgcgc                                                                                                                                            >  1:329433/1‑149 (MQ=255)   aaaTTTTTCCCTAAGGGAATTGCCGTGGTAAACCGTTATACTTCGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCgg                                                                                                                                          >  1:574873/1‑149 (MQ=255)    aagttttCCCGAAGGGAATTCCCTTGTTAAACCGTTATCCTTTGAGGAAGTACGTCATGCTGATCGTGGTGATTGGCATCGGGCTGCTGTATGCGCTTCCCAACGTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGa                                                                                                                                         <  2:400748/146‑1 (MQ=255)            ccTAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTcgccgc                                                                                                                                 <  1:858369/149‑1 (MQ=255)             cTAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCgccgcc                                                                                                                                >  1:644508/1‑149 (MQ=255)               aaGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAg                                                                                                                              >  2:308729/1‑149 (MQ=255)                 gggAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTTATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGGATCGCCGCCAGTg                                                                                                                            >  1:616694/1‑149 (MQ=255)                  ggAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGa                                                                                                                           <  2:936842/149‑1 (MQ=255)                  ggAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGa                                                                                                                           >  2:15872/1‑149 (MQ=255)                       tGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCaaa                                                                                                                      >  2:273507/1‑149 (MQ=255)                        gCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAAc                                                                                                                     <  1:854124/149‑1 (MQ=255)                        gCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAAc                                                                                                                     >  1:234829/1‑149 (MQ=255)                           gtgtTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCt                                                                                                                  <  1:308729/149‑1 (MQ=255)                           gtgtTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGAGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCt                                                                                                                  <  2:930468/149‑1 (MQ=255)                               tAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATc                                                                                                              <  2:644508/149‑1 (MQ=255)                                aaaCCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATcc                                                                                                             <  2:876143/149‑1 (MQ=255)                                  aCCTTTAGCCTTTGTGGAAGGACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAg                                                                                                           <  2:640562/149‑1 (MQ=255)                                   ccGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGCTCCGGCTGTTCAGATCACTGGTGCGCGCGGAGGCGCCGCCAGTGAGCAAACGCTGATGCAgg                                                                                                          >  2:429972/1‑149 (MQ=255)                                        aTCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCCGTGAGCAAACGCTGATCCAGGTccgg                                                                                                     >  2:12841/1‑147 (MQ=255)                                         tCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCa                                                                                                                               >  2:39474/1‑122 (MQ=255)                                         tCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCa                                                                                                                               <  1:39474/122‑1 (MQ=255)                                           cTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTAGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGaaa                                                                                                  >  1:346102/1‑149 (MQ=255)                                           cTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTAAGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGaca                                                                                                  >  1:56346/1‑147 (MQ=255)                                            tttGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGaaaa                                                                                                 <  1:13533/149‑1 (MQ=255)                                             ttGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAAc                                                                                                <  1:464516/149‑1 (MQ=255)                                               gtgGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGATGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGGTCCAGGTCCAGAGAAAGt                                                                                              >  1:137741/1‑149 (MQ=255)                                                tgGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAGCCGCTGATCCAGCTCAAGAAAGCGtt                                                                                             <  2:234829/149‑1 (MQ=255)                                                 ggAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTa                                                                                            >  1:236385/1‑149 (MQ=255)                                                 ggAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTa                                                                                            <  1:1021431/149‑1 (MQ=255)                                                 ggAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCAAAACATGCTTGGTGAGGATGCGGCCATCCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAAGGCTGATCCAGGTCCAGAAAACGTTa                                                                                            >  1:1034490/1‑149 (MQ=255)                                                 ggAAGTACGGCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTCCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCGGATCCAGGTCCAGAAAACGTTa                                                                                            <  2:983136/149‑1 (MQ=255)                                                  gAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCAAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGTTGCGCGCGAAGACGCCCCCAGTGCGCAAACGCTGATCCCGGTCCAGAACCCGttcc                                                                                           >  2:473579/1‑147 (MQ=255)                                                      tACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCa                                                                                                      >  2:1032884/1‑134 (MQ=255)                                                      tACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCa                                                                                                      <  1:1032884/134‑1 (MQ=255)                                                        cgccATGCTGTTCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACaagaag                                                                                     <  2:616694/146‑1 (MQ=255)                                                        cGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACaagaag                                                                                     <  2:1046223/149‑1 (MQ=255)                                                         gTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGGAAACGTTACAagaaga                                                                                    >  1:215773/1‑149 (MQ=255)                                                          tCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTTAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAgaagaa                                                                                   >  1:678252/1‑149 (MQ=255)                                                              gCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGaaaaaa                                                                               >  2:345026/1‑149 (MQ=255)                                                               cTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAAt                                                                              <  2:574873/149‑1 (MQ=255)                                                                 gATGGTGGTGAGTGTCATGGGTGTGCTGTATGCGTTTCCCAACCTGTTGGGTGAGGATCCGGCTGTTCAGATCACTGTTGCGCGCGGAGTCGCAGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAATCGTTACAAGAAAAAAAAATaa                                                                            <  2:45615/149‑1 (MQ=255)                                                                        gtgATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTaa                                                                     <  1:965786/149‑1 (MQ=255)                                                                               tCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCtgtg                                                              <  1:273507/149‑1 (MQ=255)                                                                               tCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACCAGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCtgtg                                                              <  1:776354/149‑1 (MQ=255)                                                                                  tCGGGCTGCTGTATGCGCTTCCCACCCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCa                                                           <  1:405946/149‑1 (MQ=255)                                                                                     gtgtgctgTAGGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCTCCGCCAGTGAGCAAACGCTGATCCAGGTCCACAAAACGTTACAATAAGAAAAAATAACTGCTAAGTCTGTGGCACTg                                                        <  2:228608/146‑1 (MQ=255)                                                                                     gTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATACCTGCTAAGTCTGTGTCACTg                                                        >  2:32367/1‑149 (MQ=255)                                                                                          ctgTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTa                                                                                            >  1:1000305/1‑108 (MQ=255)                                                                                          ctgTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTa                                                                                            <  2:1000305/108‑1 (MQ=255)                                                                                          ctgTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAaga                                                   >  2:73981/1‑149 (MQ=255)                                                                                               tGCGCTTCCCCACCTGTTTGGTGCGGCTCCGGCTGATCAGACCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGgcg                                              <  1:195077/149‑1 (MQ=255)                                                                                               tGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGgcg                                              <  1:800492/149‑1 (MQ=255)                                                                                                    ttCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTAtt                                         <  1:15872/149‑1 (MQ=255)                                                                                                      cccAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAg                                                                                                                          >  1:679372/1‑66 (MQ=255)                                                                                                      cccAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAg                                                                                                                          <  2:679372/66‑1 (MQ=255)                                                                                                       ccAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTTGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGCTCCAGGTCCAGAAAACGTTACAAGAAGAAACAATAACGTCTTAGTCTGTGGCACTGGAAGAGGGCGCTATTCtt                                      <  1:523416/149‑1 (MQ=255)                                                                                                        cAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAAc                                                                                                <  1:507973/90‑1 (MQ=255)                                                                                                        cAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAAc                                                                                                >  2:507973/1‑90 (MQ=255)                                                                                                        cAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTc                                        >  1:1036503/1‑146 (MQ=255)                                                                                                        cAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTc                                        <  2:1036503/146‑1 (MQ=255)                                                                                                        cAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTg                                     >  1:539927/1‑149 (MQ=255)                                                                                                        cAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTg                                     >  2:591233/1‑149 (MQ=255)                                                                                                         aaCCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTgc                                    >  2:893138/1‑149 (MQ=255)                                                                                                           ccTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTgcgc                                  >  1:10859/1‑149 (MQ=255)                                                                                                            cTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTgcgcg                                 >  1:592042/1‑149 (MQ=255)                                                                                                              gTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGATACAAGAAGAAAAAATAACTACTAAGTCTGCGGCACTGGAAGAGGGCGCAAATCTTGAGCGCt                               >  1:132754/1‑149 (MQ=255)                                                                                                                     gAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTc                        <  2:236385/149‑1 (MQ=255)                                                                                                                     gAGGATCCGGCTGTTCAGATCACTGGTACGCGCGGAGTAGCCACCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTATGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTc                        >  2:10052/1‑149 (MQ=255)                                                                                                                      aggtgccGGCTGTTCAGAGCACTGGTGCGGGCGGAGTCGCAGCCAGTGAGAAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTcc                       <  2:137741/144‑1 (MQ=255)                                                                                                                       gtaTCCGGCGGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGCCTCCa                      <  1:368401/147‑1 (MQ=255)                                                                                                                        gATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAACAGGGCGCTATTCTTGCGCGCTTCGACTCCAc                     >  2:724967/1‑149 (MQ=255)                                                                                                                             ggCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCtt                                      >  1:851398/1‑127 (MQ=255)                                                                                                                             ggCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCtt                                      <  2:851398/127‑1 (MQ=255)                                                                                                                             ggCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGaca                >  2:414259/1‑149 (MQ=255)                                                                                                                                tGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACAccc             >  2:133274/1‑149 (MQ=255)                                                                                                                                   tCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGt          >  1:914970/1‑149 (MQ=255)                                                                                                                                      gctCAATGGTGCGGCCGGAGTCGCCGCCATTGAGGAAACGCTGTTCCAGGGCCATAAAACGTTTCAAGCAGAAATATTAACTGCTAAGTCTGTGGCTCTGGAAGAGGCCGCTATGCTTGCAAGCGTCGCTTCCACTGACACCCAGTTgc       <  2:545769/147‑1 (MQ=255)                                                                                                                                      gATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGTTgc       <  2:70639/149‑1 (MQ=255)                                                                                                                                       aTCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGTTgcg      >  2:651792/1‑149 (MQ=255)                                                                                                                                       aTCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAAGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGTTgcg      >  1:107931/1‑149 (MQ=255)                                                                                                                                           cTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGTTGCGCGCt  >  1:905145/1‑149 (MQ=255)                                                                                                                                              |                                                                                                                                                  TAAAATTTTTCCCTAAGGGAATTGCCGTGTTAAACCGTTATCCTTTGTGGAAGTACGTCATGCTGATCGTGGTGATTGTCATCGGTCTGCTGTATGCGCTTCCCAACCTGTTTGGTGAGGATCCGGCTGTTCAGATCACTGGTGCGCGCGGAGTCGCCGCCAGTGAGCAAACGCTGATCCAGGTCCAGAAAACGTTACAAGAAGAAAAAATAACTGCTAAGTCTGTGGCACTGGAAGAGGGCGCTATTCTTGCGCGCTTCGACTCCACTGACACCCAGTTGCGCGCT  >  NC_000913_3_pae_pgi/427621‑427907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.