New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_pae_pgi	1354213 =	68 (1.140)	5 (0.090)	5/264	7.3	7.2%	coding (306/891 nt)	sapC	antimicrobial peptide transport ABC transporter permease
	?	NC_000913_3_pae_pgi	1354235 =	64 (1.130)					coding (284/891 nt)	sapC	antimicrobial peptide transport ABC transporter permease
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCGGAGGCCGTGTGTCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCAATAATTGATAACCGAGAAATTGCTGGTCGATGCCGTAAGGCGCAAACCAGCC  >  NC_000913_3_pae_pgi/1354088‑1354380                                                                                                                                                    |                                                                                                                                                  agcGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCGGAGGCCGTGTGTCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGc                                                                                                                                                  <  1:588413/149‑1 (MQ=255)    gAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCGGAGGCCGTGTGTCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTcc                                                                                                                                               <  1:178867/149‑1 (MQ=255)    gAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCGGAGGCCGTGTGTCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTcc                                                                                                                                               <  1:595229/149‑1 (MQ=255)         gATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCGGAGGCCGTGTGTCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCa                                                                                                                                          <  1:645548/149‑1 (MQ=255)           tCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCGGAGGCCGTGTGTCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGt                                                                                                                                        >  2:77370/1‑149 (MQ=255)           tCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCGGAGGCCGTGTGTCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGt                                                                                                                                        >  1:556429/1‑149 (MQ=255)              ccAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCGGAGGCCGTGTGTCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTaaa                                                                                                                                     >  2:381134/1‑149 (MQ=255)              ccAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCGGAGGCCGTGTGTCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTaaa                                                                                                                                     >  1:970860/1‑149 (MQ=255)              ccAGGAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCGGAGGCCGTGTGTCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTaaa                                                                                                                                     <  1:479568/149‑1 (MQ=255)                        aTCCAGAATATGGTTAAGCACCGCTGAGCGGAGGCCGTGTGTCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCCTaaaa                                                                                                                           >  1:77277/1‑149 (MQ=255)                                 atGGTTAAGCACCGCTGAGCGGAGGCCGTGTGTCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTc                                                                                                                  <  2:874884/149‑1 (MQ=255)                                     ttAAGCACCGCTGAGCGGAGGCCGTGTGTCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACCGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAg                                                                                                              >  2:709865/1‑149 (MQ=255)                                          caccacCGAGCGGAGGCCGTGGGGCGCCCCGGCGAAGGTGCCCAGGACCAGGCCACAGATCGTCGCGCCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGgtcgt                                                                                                         <  2:63358/149‑1 (MQ=255)                                              gCTGAGCGGAGGCCGTGTGTCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAg                                                                                                              >  1:601045/1‑140 (MQ=255)                                              gCTGAGCGGAGGCCGTGTGTCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAg                                                                                                              <  2:601045/140‑1 (MQ=255)                                              gCTGAGCGGAGGCCGTGTGTCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCCCGTCCGGGGTCGTCAGt                                                                                                     >  2:725301/1‑149 (MQ=255)                                                         gCCGTGTGTCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGgaaga                                                                                          >  1:400909/1‑149 (MQ=255)                                                             tgtgtCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGaagaaaga                                                                                      <  2:556429/149‑1 (MQ=255)                                                                    ccccGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAg                                                                                                                                         <  2:904507/91‑1 (MQ=255)                                                                    ccccGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAg                                                                                                                                         >  1:904507/1‑91 (MQ=255)                                                                     cccGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCGACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAAGATCGCGTCCGAGGTCGTCAGTCCCGAGGAAGAGAGAAACTTCGc                                                                              >  1:801179/1‑149 (MQ=255)                                                                      ccGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGcc                                                                             <  1:313647/149‑1 (MQ=255)                                                                                  cccAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCCCCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCATCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCCCCATAGCGCGcccc                                                                 >  2:177131/1‑148 (MQ=255)                                                                                  cccAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAgcgc                                                                      >  2:307868/1‑144 (MQ=255)                                                                                  cccAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAgcgc                                                                      <  1:307868/144‑1 (MQ=255)                                                                                   ccAGTACCAGGCCAGAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTTAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCAt                                                                <  2:794999/149‑1 (MQ=255)                                                                                    cAGTACCAGGCCACAGATCGTCGCGGCCAGCGTCACCACAACTGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAAAATCGCGTCCGAGGCCGTCAGTCCCCACGAAGAAAGAAACTTCCCCCTAGCGCGACCATg                                                               >  1:46221/1‑149 (MQ=255)                                                                                     aggaCCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGa                                                              <  2:203682/146‑1 (MQ=255)                                                                                     aGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGa                                                              <  1:817656/149‑1 (MQ=255)                                                                                     aGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCAAAAATGCGCCACCCACGGTTGGCGCAGCTCCGCCCAGTAAACGGCTTAAAACATCGCGTCCGCGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATACACGGACCATGa                                                              >  2:290727/1‑149 (MQ=255)                                                                                        aCCAGGCCACAGATCGTCGCGCCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCCCAGTAAACGGCCTAAAACCTCGCGTCCGACGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCCTAGCGCGACCATgcacg                                                           >  2:253391/1‑145 (MQ=255)                                                                                          cAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGCCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGAcggcg                                                         >  1:10851/1‑149 (MQ=255)                                                                                           aGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGa                                                                                                               >  1:66053/1‑94 (MQ=255)                                                                                           aGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGa                                                                                                               <  2:66053/94‑1 (MQ=255)                                                                                             gCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGaagaaag                                                                                       >  1:243576/1‑116 (MQ=255)                                                                                             gCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGaagaaag                                                                                       <  2:243576/116‑1 (MQ=255)                                                                                               cacaGACCGGCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCaat                                                    <  1:119051/149‑1 (MQ=255)                                                                                                acaGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCa                                                                                                       <  1:94324/97‑1 (MQ=255)                                                                                                acaGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCa                                                                                                       >  2:94324/1‑97 (MQ=255)                                                                                                 caGTTCGTCGCCGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCaataa                                                  <  2:341701/149‑1 (MQ=255)                                                                                                    aTCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCAATAATTg                                               >  1:855594/1‑149 (MQ=255)                                                                                                          gcgGCAAGTGTCACCACAAATGCGCAACCCACGGTTCGCGCAGCTCCGCTCATTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCAATAATTGATAAcc                                         <  2:393393/149‑1 (MQ=255)                                                                                                           cgGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTAAGTCCCCAAGAAGAAAGAAACTTCGCCATAGCGCAACCATAACGGCGGCAATAATTGATAACCg                                        >  1:393393/1‑149 (MQ=255)                                                                                                              cAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCAATAATTGATAACCgaga                                     >  1:720698/1‑149 (MQ=255)                                                                                                               aaGCGTCACCACAAATCCGCCACCCACGGTAGGCGCAGCTCCGCTCAGAAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACAATGACGGCGGCCAAAATGGATAAcggcgac                                    >  2:828541/1‑143 (MQ=255)                                                                                                                aGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAACCCCCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCAATAATTGATAACCGAGaaa                                   <  1:824939/149‑1 (MQ=255)                                                                                                                 gCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCg                                                                               >  2:656467/1‑104 (MQ=255)                                                                                                                 gCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCGCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCg                                                                               <  1:656467/104‑1 (MQ=255)                                                                                                                     caccacAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCAATAATTGATAACCGAGAAATTGCt                              <  2:970860/149‑1 (MQ=255)                                                                                                                       ccacAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCAATAATTGATAACCGAGAAATTGCTgg                            <  1:77370/149‑1 (MQ=255)                                                                                                                         acaAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCAATAATTGATAACCGAGAAATTGCTGGTc                          >  2:350885/1‑149 (MQ=255)                                                                                                                         acaAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGCCAGGCCCCAGGAAGAAACAAACTTCGCCATAGCGCTACCATGACGGCGGCAATAATCGATAAACGAGAAATTACAGGTc                          >  1:647543/1‑149 (MQ=255)                                                                                                                         acaAATGCGCCACCCACCATTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCCATAATTGATAACCGCGAAATTGCTGCTc                          >  2:976822/1‑149 (MQ=255)                                                                                                                          caAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCAATAATTGATAACCGAGAAATTGCTGGTCg                         >  2:762383/1‑149 (MQ=255)                                                                                                                           aaaTGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCa                                                                                                       >  1:160937/1‑70 (MQ=255)                                                                                                                           aaaTGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCa                                                                                                       <  2:160937/70‑1 (MQ=255)                                                                                                                           aaaTGCGCCACCCACGGTTGGCGCAGCTCCGCACAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGACATAATTGATAGCCGAGAAATTGCTGGTAGa                        >  2:243750/1‑149 (MQ=255)                                                                                                                             aTGCGCCACCCACGGTCGGCGCAGCTCCGCTCAGTAAACGGCGTAAAACATCGCCCCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTGCGCCATAGCGCGACCATGACGGCGGCAATAATTGATAACCGAGAAATTGCTGGTCGAtt                      <  2:801179/149‑2 (MQ=255)                                                                                                                                    acccacGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCAATAATTGATAACCGAGAAATTGCTGGTCGATGCCGTAAg               >  1:155145/1‑149 (MQ=255)                                                                                                                                      ccacGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGTCAACAATAATTGATAACCGAGAAATTGCTGGTCGATGCCGTAAgcc             >  1:408828/1‑147 (MQ=255)                                                                                                                                      ccacGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCAATAATTGATAACCGAGAAATTGCTGGTCGATGCCGTAAGgc             >  1:667661/1‑149 (MQ=255)                                                                                                                                      ccacGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCAATAATTGATAACCGAGAAATTGCTGGTCGATGCCGTAAGgc             <  2:855594/149‑1 (MQ=255)                                                                                                                                        gtgggtGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCAATAATTGATAACCGAGAAATTGCTGGTCGATGCCGTAAGgcgc           >  2:563312/6‑149 (MQ=255)                                                                                                                                         cGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCaataa                                                  >  1:195328/1‑109 (MQ=255)                                                                                                                                         cGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCaataa                                                  <  2:195328/109‑1 (MQ=255)                                                                                                                                           ggtGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCAATAATTGATAACCGAGAAATTGCTGGTCGATGCCGTAAGGCGCaaa        <  2:425144/147‑1 (MQ=255)                                                                                                                                              ggCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGAGGCAATAATTGATAACCGAGAAATTGCTGGTAGATGCCGTAAGGCGCAAActa     >  2:643714/1‑147 (MQ=255)                                                                                                                                                 gcAGGTGCGCTAAGTAAACGGCTTAAAACATCGCGTCCGAGGTGGTCAGGCCCCAGGAAGAAAGAATCTTCGCCATAGCGCGACCATGACGGCGGCATTAATTGATAACCGAGAAATTGCTGGTCGATGCCGTAAGGCGCAACCCCgca  <  2:810300/149‑2 (MQ=255)                                                                                                                                                 gcAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCAATAATTGATAACCGAGaaa                                   >  1:319698/1‑116 (MQ=255)                                                                                                                                                 gcAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCAATAATTGATAACCGAGaaa                                   <  2:319698/116‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                  AGCGAAGGGATCGCCAGTAAGGTATCCAGAATATGGTTAAGCACCGCTGAGCGGAGGCCGTGTGTCGCCCCGGCGAAGGTGCCCAGTACCAGGCCACAGATCGTCGCGGCAAGCGTCACCACAAATGCGCCACCCACGGTTGGCGCAGCTCCGCTCAGTAAACGGCTTAAAACATCGCGTCCGAGGTCGTCAGTCCCCAGGAAGAAAGAAACTTCGCCATAGCGCGACCATGACGGCGGCAATAATTGATAACCGAGAAATTGCTGGTCGATGCCGTAAGGCGCAAACCAGCC  >  NC_000913_3_pae_pgi/1354088‑1354380

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.