| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_pae_pgi | = 3699911 | 65 (1.090) | 6 (0.110) | 6/260 | 6.7 | 8.8% | intergenic (+18/+69) | bcsG/ldrD | DUF3260 family cellulose production inner membrane protein/toxic polypeptide, small |
| ? | NC_000913_3_pae_pgi | = 3699921 | 63 (1.130) | intergenic (+28/+59) | bcsG/ldrD | DUF3260 family cellulose production inner membrane protein/toxic polypeptide, small | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_pgi/3699757‑3699911‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccgcagGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGGCGAACGTACGGTTTATCCTGGTATTGAATAACTACTGCATTTGAGTTCTCGGAGACCGGTGCTGTTTGTGGCAACCCACTGGT < NC_000913_3_pae_pgi/3699921‑3699774 TTGACTGGAAAAAACTCACCAGTGGGTTGCCACAACCAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAACCCGTACGTTCGCCTGAACGGCGGCGACGGGAGGCCTTCCCCGCAGTAAAAACAAAAAGGG > 1:191316/1‑149 ACTGGAAAAAACTCACCAGTGGGTTGCCACAAGCAGCACCGGTCTACGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTAACCGCAGTAAGAACGAAAAAGGCCG > 1:835028/1‑149 ACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCG > 1:8974/1‑149 CTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGC > 1:124318/1‑149 TGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCA > 1:723326/1‑149 TGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGC < 2:751260/145‑1 TGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGC > 1:751260/1‑145 CACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTCCGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGGGGGGAAACTCTGCGGCCTTTTTC < 1:934153/149‑1 AACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGGTCGCATGGAGCGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACC < 1:30144/149‑1 TAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGGGGGGAAACTCTGCGGCC > 1:822140/1‑107 TAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGGGGGGAAACTCTGCGGCC < 2:822140/107‑1 TTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAA < 1:34819/127‑1 TTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAA > 2:34819/1‑127 gggcagGGCCGCAGGTGGGAAATGCTGCGGCCTGTATCGTTCTTACCGCGGGTAATGCACCCAGTCGCCGCCGTTCAGGCGAACGTACGGTTTATCCTGGTATTGACTAACTACTGCATTTGAGTTCTCGGAGACCGGTGCTGTTTGTG < 2:732178/143‑1 gGGCCGCAGGGGCGAATATCTGGGGCTTTTTTCGTTCTTACTGGGGGTAAGGCACCCGGTCGCCGCCGTTCAGGCGAACGTACGGTTTATCCTGGTATTGAATAACTACTGCATTTGAGTTCTCGGAGACCGGTGCTGTTTGTGGCAAC < 2:58432/148‑1 GCCGCAGGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGGCCAGGCGAACGTACGGTGTATCCTGGTATTGAATAACTACTGCATTTGAGTTCTCGAAGACCGGTGCTGTTTGTGACAACCC > 1:950945/1‑149 CAGGGGGTAGACTCGGGGGCCTGTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGGCGCACGTACGGTTTAGCCTGGTATTGAATAACTTCTGCATTTGAGTTCTCGGAGACCGGTGCTGTTTGTGGCAACCCACTG < 2:544362/149‑1 AGGGGGGAAACGCTGCGGCCTCTCTCGTTCTTCCTGCCAGTAAGTCAGCCAGTCTCCGCCGTTCAGGCTAACGTACGGTTTAGCCTGGTATTGAATAACTACTGCATTTGAGTTCTCGGAGACCGGTGCTGTTTGTGGCAACCCACTGG < 2:112639/149‑1 GGGGGGAAAGTCTGCGGCCTTTTTCGTTCTTAGTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGGCGATCGTACGGTTTATCCTGGTATTGAATAACTACTGCATTTGAGTTCCCGGAGACCGGTGCTGTTTGTGGCAACCCACTGGT < 2:253519/149‑1 TTGACTGGAAAAAACTCACCAGTGGGTTGCCACAAACAGCACCGGTCTCCGAGAACTCAAATGCAGTAGTTATTCAATACCAGGATAAACCGTACGTTCGCCTGAACGGCGGCGACTGGGTGCCTTACCCGCAGTAAGAACGAAAAAGGCCGCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_pae_pgi/3699757‑3699911‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccgcagGGGGGAAACTCTGCGGCCTTTTTCGTTCTTACTGCGGGTAAGGCACCCAGTCGCCGCCGTTCAGGCGAACGTACGGTTTATCCTGGTATTGAATAACTACTGCATTTGAGTTCTCGGAGACCGGTGCTGTTTGTGGCAACCCACTGGT < NC_000913_3_pae_pgi/3699921‑3699774 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |