mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.31.0 revision 69e7c3c0fa11
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 78 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP016816 | 203,895 | 2 | . | T | 78.3% | 561.8 / 149.8 | 207 | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 202,485 | 0 | T | . | 73.3% | 347.1 / inf | 289 | intergenic (+263/‑412) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 203,895 | 3 | . | T | 68.1% | 499.0 / 234.6 | 207 | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 165,250 | 0 | T | . | 67.8% | 1454.3 / inf | 1126 | intergenic (+214/‑328) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 202,486 | 0 | T | . | 60.8% | 129.9 / inf | 286 | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 76,893 | 0 | T | . | 59.6% | inf / inf | 1361 | intergenic (‑142/+43) | JCVSYN2_00300/JCVSYN2_00305 | UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein |
| * | CP016816 | 105,339 | 0 | T | G | 57.5% | 1268.7 / 301.2 | 1079 | intergenic (+834/+92) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| * | CP016816 | 165,251 | 0 | T | . | 54.9% | inf / inf | 1126 | intergenic (+215/‑327) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 202,494 | 0 | A | T | 53.0% | 5.0 / 216.2 | 281 | intergenic (+272/‑403) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 203,912 | 0 | G | T | 52.6% | 66.5 / 265.7 | 286 | intergenic (+296/+162) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 420,253 | 0 | C | A | 47.8% | 615.8 / inf | 1009 | intergenic (‑536/+307) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| * | CP016816 | 203,895 | 4 | . | T | 47.3% | 360.3 / inf | 207 | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 437,880 | 2 | . | T | 46.7% | inf / inf | 585 | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| * | CP016816 | 437,880 | 1 | . | A | 46.6% | inf / inf | 585 | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| * | CP016816 | 202,477 | 0 | C | A | 46.2% | 270.9 / 169.6 | 382 | intergenic (+255/‑420) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 420,234 | 1 | . | T | 44.2% | 50.2 / inf | 756 | intergenic (‑517/+326) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| * | CP016816 | 34,945 | 1 | . | A | 44.1% | 126.8 / inf | 1466 | intergenic (+49/+117) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH |
| * | CP016816 | 105,362 | 0 | A | . | 41.7% | 1200.7 / inf | 1052 | intergenic (+857/+69) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| * | CP016816 | 203,924 | 0 | G | T | 40.8% | 373.9 / 101.1 | 394 | intergenic (+308/+150) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 202,481 | 0 | C | A | 36.8% | 262.2 / 53.0 | 310 | intergenic (+259/‑416) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 150 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP016816 | = 437880 | 279 (0.190) | 517 (0.290) +ATAT |
136/186 | 7.2 | 57.2% | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | 437881 = | 438 (0.240) | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | 165253 = | 896 (0.480) | 568 (0.350) | 135/218 | 11.9 | 43.8% | intergenic (+217/‑325) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| ? | CP016816 | = 165249 | 676 (0.420) | intergenic (+213/‑329) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser | |||||
| * | ? | CP016816 | 76896 = | 1458 (0.790) | 234 (0.140) | 116/224 | 16.5 | 15.6% | intergenic (‑145/+40) | JCVSYN2_00300/JCVSYN2_00305 | UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein |
| ? | CP016816 | = 76892 | 1223 (0.740) | intergenic (‑141/+44) | JCVSYN2_00300/JCVSYN2_00305 | UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein | |||||
| * | ? | CP016816 | 105365 = | 1161 (0.630) | 166 (0.100) | 91/220 | 21.7 | 14.1% | intergenic (+860/+66) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| ? | CP016816 | = 105361 | 992 (0.610) | intergenic (+856/+70) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase | |||||
| * | ? | CP016816 | = 34945 | 1126 (0.690) | 439 (0.240) +AAA |
87/214 | 21.9 | 26.2% | intergenic (+49/+117) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH |
| ? | CP016816 | 34946 = | 1250 (0.670) | intergenic (+50/+116) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH | |||||
| * | ? | CP016816 | = 165267 | 923 (0.500) | 540 (0.290) | 80/248 | 27.5 | 37.2% | intergenic (+231/‑311) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| ? | CP016816 | 165271 = | 905 (0.490) | intergenic (+235/‑307) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser | |||||
| * | ? | CP016816 | = 34944 | 1262 (0.680) | 469 (0.260) +TAA |
78/244 | 27.6 | 27.6% | intergenic (+48/+118) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH |
| ? | CP016816 | 34945 = | 1262 (0.680) | intergenic (+49/+117) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH | |||||
| * | ? | CP016816 | = 202486 | 107 (0.060) | 248 (0.130) | 73/250 | 29.6 | 68.2% | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| ? | CP016816 | 202490 = | 124 (0.070) | intergenic (+268/‑407) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein | |||||
| * | ? | CP016816 | = 165247 | 1052 (0.570) | 399 (0.220) | 70/250 | 30.5 | 27.4% | intergenic (+211/‑331) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| ? | CP016816 | 165251 = | 1061 (0.570) | intergenic (+215/‑327) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser | |||||
| * | ? | CP016816 | 117946 = | 2200 (1.190) | 66 (0.040) | 55/210 | 30.8 | 3.5% | intergenic (+67/+792) | JCVSYN2_00460/JCVSYN2_00465 | ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter permease |
| ? | CP016816 | = 117942 | 1807 (1.160) | intergenic (+63/+796) | JCVSYN2_00460/JCVSYN2_00465 | ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter permease | |||||