Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4770CA46.2% 270.9 / 169.6 382intergenic (+255/‑420)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (128/76);  new base A (57/118);  total (187/195)
Fisher's exact test for biased strand distribution p-value = 6.08e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 446 total aligned reads displayed.

AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATA  >  CP016816/202350‑202604
                                                                                                                                |                                                                                                                               
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATATCATAAACTTAATAAATCTTATAATGTAGATCCTCTTAATCAATAATTTTATATATTTATCTTCACAAAA‑AAAAAAAAAAc                                                                                                                                 >  1:3771184/1‑128 (MQ=255)
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAc                                                                                                                                 <  1:2995377/128‑1 (MQ=255)
   tattgaattttttgtAAAAAATATAGGTTATGTTAATTAAAATAACATAAAATTTATAATTATTATTATGTATATACTCGTGTTCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAt                                                                                                                              <  2:1692607/116‑1 (MQ=255)
   tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTATTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAt                                                                                                                              >  1:3454795/1‑128 (MQ=255)
    agtGAAGTTAGTGTTAATAATAGAGTTATGTTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                             <  2:152116/128‑1 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCATCACAAAT‑AAAAAAAAAAAAATc                                                                                                                             >  1:3336735/1‑128 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATATGTTTATCTTCACAAAT‑AAAAAAAAAACaaaa                                                                                                                             >  1:3553631/1‑126 (MQ=255)
    agtGAAGTTAGAGTAAATAATAGAGTTAAGTTTAATAAAAATACCATAAAATTAATAATTATTATAAATAAAATAATATAAATCTATTATTTAAATTTATTAAATTAACAAAT‑Aaaaaaaaaaaaaaa                                                                                                                             >  2:2816294/1‑126 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACaaaac                                                                                                                            >  2:1339680/1‑125 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcc                                                                                                                            >  2:4013551/1‑128 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcc                                                                                                                            <  1:2012409/128‑1 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATcca                                                                                                                           >  2:3501565/1‑127 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTATTGATCTATTTTTTTATTAGTATATCTTCACAAAT‑AAAAAAAAAACaaaaca                                                                                                                           >  2:499997/1‑124 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAAAACCATAAACATAATAATTCTTAAAATCTATATACTCTTAATCAATTATTATAAATATATATATTAAAAAAT‑Aaaaaaaaaaaaaaaaa                                                                                                                           >  2:2770196/1‑124 (MQ=255)
         aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCACCtt                                                                                                                        >  1:3198375/1‑128 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAtaaacata                                                                                                                       >  1:3648701/1‑121 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTATTTATATTAACAaaa‑aaaaaaaaaaaaaaaaaaaaa                                                                                                                       >  2:912376/1‑120 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATACCCtta                                                                                                                       >  2:3467963/1‑127 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAACCACtaa                                                                                                                       >  2:3960216/1‑126 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCTTGATCTATTTTTTTATTTATTTATCTTAACAAAT‑Aaaaaaaaaaaaaaaacatta                                                                                                                       >  1:3904721/1‑120 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAAATTAAAAATTCTAATAATGTATATCATCTAGATCTATTTTTATAATATTTTATCTTaaaaaaa‑aaaaaaaaaaaaaaaacaata                                                                                                                       >  2:733171/1‑120 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACAATAAACTTAATAAAACTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGATTATCATCAAAAAA‑AAAAAAAAAACaaacaccata                                                                                                                       >  2:2014513/1‑120 (MQ=255)
           ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAACAAAcccaaaaa                                                                                                                      >  2:850859/1‑123 (MQ=255)
            tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATATTTTTATTTATTTATCTTCACAAAT‑AAAAAAAAAAAAATcacataaaa                                                                                                                     >  2:1130436/1‑120 (MQ=255)
            tAGTGTAAATAATAGAGTTAAGCTTAATTAAAATACCATAAACTTAATAATTCTTATAAAGTATAACCTCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAATCCACtaaaa                                                                                                                     >  2:1431182/1‑124 (MQ=255)
               tgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTATAATTTAGATCAACGATATCTATTTTATTATTAATTTATAATAAAAAAT‑AAAAAAAAAAAAAtaaaaataaaaat                                                                                                                  >  2:2663058/1‑116 (MQ=255)
                   aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAt                                                                                                                              >  1:3837279/1‑112 (MQ=255)
                        taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAAAAATACACTaaaaaaaaaaaaaaaa                                                                                                         >  2:2180075/1‑128 (MQ=255)
                        taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAACACC‑‑TTAAAAATTaaaaaaaa                                                                                                       >  2:3379997/1‑128 (MQ=255)
                             ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAAACC‑‑ATAAAAAAATaaaaaaaaaaaaa                                                                                                  >  2:1265363/1‑128 (MQ=255)
                             ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTACACAAAT‑AAAAAAAAAACAAACCCC‑‑‑TAAAAAATaaaaaaaaaaaaaa                                                                                                 >  2:3780986/1‑128 (MQ=255)
                             ttAAGGTTAATTAAAATACAATAAACTTAATAATTCTTATAATGTAGATCCTCTTTATCTATTTTTTTATTTTTTTATATTAACAAAT‑AAAAAAAAAAAAATAAACTTaaaaaaaaaaaaaaaaaaaa                                                                                                    >  1:1292498/1‑128 (MQ=255)
                              tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTTTTTATCTTAAAAAAT‑AAAAAAAAAAAAAT‑‑‑CAAATAAAAAATaaaaaaaaaaaaaaa                                                                                                >  2:2606957/1‑128 (MQ=255)
                              tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTTTTTATCTTCACAAAT‑AAAAAAAAAA‑AATCCC‑‑AATAAAAATTaaaaaaaaaaaaaaa                                                                                                >  2:3310092/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATAATCATAATCTATTTTTTTATTTATTTATAATCACAAAA‑AAAAAAAAAACAA‑‑AAAAATAAAAAAATaaaaaaaaaaaaaaa                                                                                                >  2:2359863/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAAAAAT‑AAAAAAAAAA‑AATAACC‑‑CTAAAAAATtaaaaaaaaaaaaaaa                                                                                               >  2:3625316/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAATTGTAAATCTTAACAAAA‑AAAAAAAAAACAAACCAC‑‑TAAAAAAATaaaaaaaaaaaaaaa                                                                                                >  1:3094170/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTATTTTATCTAAAAAAAT‑AAAAAAAAAACAA‑‑‑AAAAATAAAAAATaaaaaaaaaaaaaaaa                                                                                               >  2:2468819/1‑128 (MQ=255)
                                aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaaa                                                                                               >  1:3481191/1‑128 (MQ=255)
                                aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCACC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                               >  2:2066477/1‑128 (MQ=255)
                                aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                              >  1:3041044/1‑128 (MQ=255)
                                  tttaattaaAATAAAATAAATTTAATAATTATTAAAAATTATTACAAAGTTATCTATTTTTTTATTTTTTTAAATTAAAAAAT‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                             <  1:159141/127‑1 (MQ=255)
                                  gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATCAC‑‑‑ATAAAAAATtaaaaaaaaaaaaaaaaaa                                                                                            >  1:2266349/1‑128 (MQ=255)
                                    taattaaAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTATATCTATTAATATATATAAATATATAAACAAAA‑AAAAAAAAAACAA‑‑‑ACAAATAAAAAATtaaaaaaaaaaaaaaaaaaaa                                                                                          >  2:2716691/1‑128 (MQ=255)
                                     aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATAACC‑‑TTAAAAAATaaaaaaaaaaaaaaaaaaaaa                                                                                          >  1:3585145/1‑128 (MQ=255)
                                      attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCACTTAaaaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                           >  2:3868914/1‑128 (MQ=255)
                                       ttaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGAGATCTATTTTTATATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAAAACCC‑‑TAAAAAATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                        >  2:435503/1‑126 (MQ=255)
                                       ttaaAATAACATAAAATTAATAATTCTAAATATGTATAAACTCTTGATATATTTTTTTATTTTTTTATATTAAAAAAT‑AAAAAAAAAACAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTa                                                                                       <  1:2316245/128‑1 (MQ=255)
                                        taaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAAAAATACCC‑‑TAAAAAAATaaaaaaaaaaaaaaaaaaaaaaaa                                                                                       >  2:3241315/1‑125 (MQ=255)
                                           aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAAAACAC‑‑TAAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaac                                                                                    >  2:3541626/1‑122 (MQ=255)
                                             taacATAAACTTAATAATTATTATAATTTATATCCTCTTTATATATTTTTTTATTTTTTTATCTTCAAAAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                <  1:236119/125‑1 (MQ=255)
                                                 aTAAACATAAAAATACATAAAATTTACACCCCCCTGATCAATTTTTTTATTTGTTTATCTTCACAAAA‑AAAAAAAAAACAATCCCCTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                                <  1:1568215/128‑1 (MQ=255)
                                                   taatatataaatTATTATAATTTATATTCTGTTTATATTTATTTTTTTTTTTTTATAATCACAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                          <  2:952887/119‑1 (MQ=255)
                                                   aaaattaaaaattaTAATAATGTATATCCACTTTAACTATTTTTTTATTTTTTTATATTAACAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                          <  1:184692/128‑1 (MQ=255)
                                                   aaaaTTAATAATTATAATAATTTTTATACTCTTGTTTTATTTTTTTATTTTTTTAATATAAAAAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAActc                                                                            <  1:3379997/128‑1 (MQ=255)
                                                    aaattAAAAATTCTTATAAATTTTATACTAGTTTTTTATTTTTTTTTTTTTTTATATTCAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                          <  2:374099/125‑1 (MQ=255)
                                                     acataataaTTCTTATAATTTATATAATTTTTTTTTTTTTTTTTATTTGTTTATATTAAAAAAA‑AAAAAAAAAAAAAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                         <  2:3182601/125‑1 (MQ=255)
                                                     aattAAAAATTCTTATAATGTATAACCTCTTTATATATTTTTTTATATTTTTATAAAAACAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                          <  1:360665/126‑1 (MQ=255)
                                                          aaaatTTTTATAATTTATATAATCTTTTTATATTTTTTTATTTTTTTAATATAAAAAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCt                                                                     <  2:3266767/126‑1 (MQ=255)
                                                            aatTATTATAATTTATATACTCTTTTTCTATTTTTTTATTTTTTAATAATCACAAAA‑AAAAAAAAAACAAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                   <  1:2186035/128‑1 (MQ=255)
                                                            aatTATTAAAATTTATATATTCGTTTTATATTTTTTTATTTTTATATCTTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaa                                                                  <  1:599561/128‑1 (MQ=255)
                                                              tctttAAAATTTATATCAACGTTATATAATTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaaa                                                                <  1:2683912/125‑1 (MQ=255)
                                                               tattATAATTTATATACTATTGATATATTTTTTTATTTTTTTATATTCAAAAAT‑‑AAAAAAAAACAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                               <  1:1434394/126‑1 (MQ=255)
                                                                tttAAAATTTATATTCTCTTGTTATATTTTTTTATTTTTTTATATTAAAAAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAtt                                                              <  2:3989555/127‑1 (MQ=255)
                                                                       tGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                             >  1:810038/1‑61 (MQ=255)
                                                                       tGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATc                                                                                                                             <  2:810038/61‑1 (MQ=255)
                                                                              gactttgttatttttttttatttttttaAATTTAAAAAT‑AAAAAAAAAAAAATACCC‑‑TAAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                 <  2:2310632/116‑1 (MQ=255)
                                                                               ttttttttttttttttttATTT‑TTTTTTTTAAAAAAT‑AAAAAAAAAAAAAATACCCATTAAAATTTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                 <  2:3679279/117‑1 (MQ=255)
                                                                                 atgtttatATTTTTTTTTTTTTTTATATTAAAAAAA‑AAAAAAAAAACAAAACCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcaca                                               <  1:1699292/121‑1 (MQ=255)
                                                                                  tataaatttttttttatttttttaATTTAAAAAAA‑AAAAAAAAAAAAATACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                             <  1:648460/120‑1 (MQ=255)
                                                                                   ttatttttttttttatttttttaTAAT‑AAAAAT‑ATAAAAAAAAAAAAATTCATTT‑AAAATTAAAAAATAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                            <  2:1921120/121‑1 (MQ=255)
                                                                                   ttatatatttttttattttttTATAATAAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                           <  1:3960216/123‑1 (MQ=255)
                                                                                   tgtaaaaTTTTTTTAATTTTTTTTAATAACAAAA‑AAAAAAAAAACAATAACCTTT‑‑AAAATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                            <  1:4031158/122‑1 (MQ=255)
                                                                                    ttattatatttttatattttTATTTTAAAAAAA‑AAAAAAAAAAAAATAACC‑AATAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                            <  1:2816294/124‑1 (MQ=255)
                                                                                    tatatatttttttattttttTATATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                            <  1:2499439/124‑1 (MQ=255)
                                                                                      ttatttttttttttttttTATAAATAAAAAA‑AAAAAAAAAAAAAAACCC‑‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttat                                         <  1:1792675/124‑1 (MQ=255)
                                                                                      ttataattttttttttttttttttTACAAAA‑AAAAAAAAAAAAAATACCCATAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                           <  2:3117004/122‑1 (MQ=255)
                                                                                          attttttaattttttaaAATCAAAAAA‑AAAAAAAAAAAAATACAC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                      <  1:1177988/127‑1 (MQ=255)
                                                                                             tttatttttttTATATTAAAAAAA‑AAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                  <  1:3253134/123‑1 (MQ=255)
                                                                                               tttttttttTATATTTACAAAA‑AAAAAAAAAAAAATCTCATT‑‑‑AAAAAT‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                              <  2:2226341/125‑1 (MQ=255)
                                                                                                tATTTTTTAAACTTAAAAAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                               <  1:3415340/128‑1 (MQ=255)
                                                                                                 aTTTTTTTATATTAAAAAAT‑AAAAAAAAAAAAAT‑‑ACAATTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                              <  1:2102941/128‑1 (MQ=255)
                                                                                                  ttttttTATATTAAAAAAA‑AAAAAAAAAAAAAACCCC‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                              <  1:1979354/128‑1 (MQ=255)
                                                                                                      tttttatattaaaaa‑aaaaaaaaaaaaATTTACATTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGat                           <  2:383121/117‑1 (MQ=255)
                                                                                                       ttttaataaaaaaa‑aaaaaaaaaaaaaaACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                        <  2:3074780/118‑1 (MQ=255)
                                                                                                       ttATCTTCACAAATAAAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑TAAAAACAAAATGAATTTATTAAAATACCATATTATACCAAATTTTTTTTTTAAAATAATATAtt                        >  1:3121967/1‑128 (MQ=255)
                                                                                                       ttATATTAAAAAAT‑AAAAAAAAAAAAATCCACTTAAAAATTAAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                          <  1:3145997/128‑1 (MQ=255)
                                                                                                        ttaattaaaaaaT‑AAAAAAAAAAAAATAACC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                       <  2:3904721/119‑1 (MQ=255)
                                                                                                         attaaaaaaaaa‑aaaaaaaaaaaaATACACTTAAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                        <  1:2606957/120‑1 (MQ=255)
                                                                                                         aTCTTCACAAAT‑AAAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑TAAAAACAAAATATATTTATTAAAATTCAATATTATACCAAATTTTATTTTTAAAATAATATATTGaa                     >  1:463013/1‑127 (MQ=255)
                                                                                                           ttttaaaaaT‑AAAAAAAAAAAAAATACCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                   <  2:1033496/122‑1 (MQ=255)
                                                                                                           tttaaaaaaa‑aaaaaaaaaaaaATAACCTAAAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                      <  2:3454795/122‑1 (MQ=255)
                                                                                                            taaaaaaaa‑aaaaaaaaaaaaATACCC‑TTAAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                    <  1:1066759/123‑1 (MQ=255)
                                                                                                             taaaaaaa‑aaaaaaaaaaCAAAACAC‑‑TTAAAAATTTAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                  <  1:1368179/124‑1 (MQ=255)
                                                                                                             taaaaaaT‑AAAAAAAAAAAAATAAC‑‑ATTAAAAATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                  <  1:2041705/124‑1 (MQ=255)
                                                                                                             tCAAAAAT‑AAAAAAAAAAAAATACAC‑TTTAAAAATAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                   <  1:791879/128‑1 (MQ=255)
                                                                                                                     aaaaaaaaaaaaaATCAACTTT‑‑AAAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata           <  1:946272/127‑1 (MQ=255)
                                                                                                                      aaaaaaaaaaaaAT‑ACCTTTT‑‑AAATTAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc         <  1:1026002/128‑1 (MQ=255)
                                                                                                                            aaaaCAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAAGACAATTTAATAAAATTACAAATTATACACCATTTTATTTTTAAAATAAGATAATTACATAatatattatttatt    >  1:1490791/1‑120 (MQ=255)
                                                                                                                              aaCAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAATAAAAACAAACTATATTTATTAAAATTCCATATTAAACCACATTTTTTTTTTAAAATAAGAAATTGACATAatattattaaaatata  >  2:3053386/1‑116 (MQ=255)
                                                                                                                                |                                                                                                                               
AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATA  >  CP016816/202350‑202604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑