Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,8953.T68.1% 499.0 / 234.6 207intergenic (+279/+179)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base . (43/23);  new base T (136/5);  total (179/28)
Fisher's exact test for biased strand distribution p-value = 4.73e-09
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 288 total aligned reads displayed.

TTTTAATTTTTTTTAT‑AAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAT‑AAAAGTAAGATTTGGATCAAC‑CAAAAC‑T‑ATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAA  >  CP016816/203767‑204008
                                                                                                                                                |                                                                                                                                  
ttttATTTTTTTTTAT‑‑AAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCATAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑g                                                                                                                                       >  1:2151710/1‑128 (MQ=255)
 tttAATTTTTTTTAT‑AAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑g                                                                                                                                       >  1:374123/1‑128 (MQ=255)
  ttAATTTTTTTTAT‑AAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑t                                                                                                                                >  1:1988890/1‑128 (MQ=255)
  ttAATTTTTTTTAT‑AAAAAAAAATAAAAATTTTTAATTTAAATCCATTTTTAAAAAATCC‑ATTTTTCTTGGCTTTTTATTATACTTATCAACATTACAACCCTTTCAAAGGGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑t                                                                                                                                <  1:3495809/128‑1 (MQ=255)
     tttttttttAT‑AAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAANTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑tttt                                                                                                                             >  2:3238531/2‑128 (MQ=255)
        ttttttAT‑‑AAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑ttttt‑‑‑ttt                                                                                                                      >  1:2275696/1‑128 (MQ=255)
         tttttATAAAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑ttttt‑‑‑tt                                                                                                                       >  1:1000264/1‑128 (MQ=255)
         tttttAT‑AAAAAAAAATAAAAATTTTTCATTTAAAGCAATTTGTAAAAAAGCA‑TATTTTCTAGGGTTTTTATTATAGTTATCAAAATTAATACTCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑ttttt‑‑‑ttt                                                                                                                      >  1:3172539/1‑128 (MQ=255)
          ttttAT‑AAAAAAAAATAAAAATTTTTTATTTAAATAAATTTTTAAAAAATTT‑TTTTTTTTTTTTTTTTTTTTTTAATTTTAAAAATTAAAAAGTTTTAAATTTTTATTTTTTATGT‑‑‑tt‑‑‑‑‑‑‑‑t‑‑‑‑‑‑ttttt‑‑‑tttt                                                                                                                     <  2:2396038/128‑1 (MQ=255)
           tttAT‑AAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTTTATTTTTTAGGC‑‑‑GT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑ttttt‑‑‑ttttt                                                                                                                    >  2:447571/1‑128 (MQ=255)
           tttAT‑AAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCA‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGAGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑ttttt‑‑‑ttttt                                                                                                                    >  2:3690079/1‑128 (MQ=255)
              taaaaaaaaaaaTAAAAATTTTTAATTTAAACCTATTTTTTAAAAATAC‑TTTTTTATTTTCTTTTTTTTTTATTTATAAAAATTAAAACTGTTTTAAATTTTTTTTTTTTTTG‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑ttttt‑‑‑ttttttt                                                                                                                  <  2:1633869/125‑1 (MQ=255)
               t‑aAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCA‑TATTTTATAGGATTTTTTTTATACTTATAAAAATTACAAAGATTTAAAATTTTTTTTTTTTGGA‑‑‑Tt‑‑‑‑‑‑‑‑t‑‑‑‑‑‑ttttt‑‑‑ttttttttt                                                                                                                >  2:542794/1‑128 (MQ=255)
                ataaaaaaaaTTAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTATGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑ttttt‑‑‑ttttttttt                                                                                                                >  2:3976717/3‑128 (MQ=255)
                 aaaaaaaaaaaaaaaaTTTTAATTTTAATCAATTTTTAAAAAACGC‑TTTTTTTTTGGTTTTTTTTTTTAATTTTAAAAATTAAAACGGTTTAAAATTTTTTTTTTTTGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑ttttt‑‑‑tttttttttt                                                                                                               <  2:3939897/128‑1 (MQ=255)
                   aaaaaaaTTAAAATTTTTTATTTAAATCGATTTTTAAAAAATGA‑TTTGTTATTTGGTTTTTATTTTAAATATAAACATTACAACGCTTTCAATGTGTTTTTTTTTGGT‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑ttttt‑‑‑tttttttttttt                                                                                                             <  2:210949/128‑2 (MQ=255)
                   aaaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACTCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑ttttt‑‑‑tttttttttttt                                                                                                             >  1:947607/1‑127 (MQ=255)
                    aaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACTACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑ttttt‑‑‑ttttttttttttt                                                                                                            >  1:962062/1‑126 (MQ=255)
                    aaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑ttttt‑‑‑ttttttttttttt                                                                                                            >  2:1340842/1‑126 (MQ=255)
                    aaaaaaTAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTGCTAGGCTTTTTTTTATACTTTTCAACATTACAACTCTTTCAAAGTGTATTTTTGAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑ttttg‑‑‑ttttttttttttt                                                                                                            >  1:701120/1‑126 (MQ=255)
                     aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAATGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑ttttt‑‑‑tttttttttttttt                                                                                                           >  1:3042683/1‑125 (MQ=255)
                     aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑ttttt‑‑‑tttttttttttttt                                                                                                           >  1:568423/1‑125 (MQ=255)
                     aaaaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑ttttt‑‑‑tttttttttttttt                                                                                                           >  2:3494162/1‑125 (MQ=255)
                            aaaatTTTTCAATTAAAACCATTTTTAAAAAATCCATTTGTT‑TACGCTTTTTATTTTTCTTATAAAAAATACAACGCTTTCAAACTTTTTTTTTTATGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑ttttt‑‑‑tttttttttttttttgtaaaa                                                                                                    <  1:3278811/128‑11 (MQ=255)
                             aaatTTTTTTTTTATACCAATTTTTTAAAAAGCC‑TATTTTTTCGGTTTTTTATTATAATTTAAAACATTACCCCGCTTTAAAATTGTATTTTTTTGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑ttttt‑‑‑tttttttttttttttgtaaaaa                                                                                                   <  2:423908/128‑12 (MQ=255)
                             aaatTTTTAATTTAAACTCATTTGTAAAAAATCC‑TTTTTTTTAGGTTTTTTTTTATAATTATCAAAATTAAAACCCTTTCAAATTGTTTTTTTTTGGC‑‑‑Tt‑‑‑‑‑‑‑‑t‑‑‑‑‑‑ttttt‑‑‑ttttttttttttttgtaaaaat                                                                                                   <  2:2813716/128‑12 (MQ=255)
                                tttttCATTTAAAGCCATTTGTAAAAAAGCA‑TATGTTATAGGATTTTTATTATACTTATCAACATTAAAACGATTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑‑TTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAA‑AAAATTa                                                                                        >  1:1310050/1‑128 (MQ=255)
                                       tttAAATCCATTTTTAAAAAATCC‑TATTTTTTTTGTTTTTTTTTTTTATTATAAAAATTAAAAATCTTTAAAATTTTATTTTTTAGTCTT‑TT‑‑‑‑‑‑‑‑T‑‑‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAT‑AAAAGTAAGAt                                                                                    <  1:983377/128‑1 (MQ=255)
                                        ttAAATCCATTTGTAAAAAAGCC‑TATGTTCTTGGCTTTTTATTTTAATTTTCAACATTACAACGGTTTCAAATTGTATTTTTTAGGG‑‑‑TT‑‑‑‑‑‑‑‑GTT‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAT‑AAAAGTAAGAtt                                                                                   <  2:3133992/128‑1 (MQ=255)
                                           aaGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTGAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GT‑‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAATATTTGGa                                                                               >  1:3271219/1‑128 (MQ=255)
                                           aaGCCATTTGTAAAAAAGCA‑TATGTGTTAGGATTTTTTTTATAATTATCAACATTACAACGCTTTAAAATTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTT‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAT‑AAAAGTAAGATTTgg                                                                                <  1:3105055/128‑1 (MQ=255)
                                                aTTTTTAAAAAATCC‑TATTTTATTGGTTTTTTTTTAAAATTATAAAAAATACAACTGTTTAAAATTGTATTTTTTTGGG‑‑‑TT‑‑‑‑‑‑‑‑GTTT‑‑‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAT‑AAAAGTAAGATTTGGATCa                                                                            <  2:1988890/128‑1 (MQ=255)
                                                 tttGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTT‑‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAAGATTTGGAACaa                                                                           >  1:2998601/1‑128 (MQ=255)
                                                   tttAAAAAATCA‑TATTTTCTAGGATTTTTATTATAATTAACAAAATTAAAACCCTTTAAAATTTTATTTTTTAGGCTTTTT‑‑‑‑‑‑‑‑T‑‑‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAT‑AAAAGTAAGATTTGGATCAAc‑c                                                                        <  1:3432220/126‑1 (MQ=255)
                                                      aaaaaaGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTT‑‑‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAT‑AAAATTAATATTTTGATcaaa‑caaa                                                                     >  1:754377/1‑128 (MQ=255)
                                                        aaaaGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTT‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAAGTAAGATTTGGAAAAAC‑Caaa                                                                     >  1:3073351/1‑128 (MQ=255)
                                                        aaaaGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAAGATTTTGATCAAC‑Aaaaa                                                                    >  1:3593433/1‑128 (MQ=255)
                                                        aaaaGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAAGATTTTGATAACA‑Caaaa                                                                    >  2:3551251/1‑128 (MQ=255)
                                                        aaaaGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GT‑‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAAAATTTTGTTAAAC‑Aaaaaaaa                                                                 >  1:2193169/1‑125 (MQ=255)
                                                         aaaGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTT‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAATATTTGGAACAAC‑Caaaa                                                                    >  2:3538067/1‑128 (MQ=255)
                                                         aaaGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑TAAAAT‑AAAAGTAATATTTGGTTAAAC‑Aaaaaa                                                                   >  1:885397/1‑127 (MQ=255)
                                                            gCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAAGTAAGATTTTGATCAAC‑Aaaaaaatt                                                                >  1:1181626/1‑124 (MQ=255)
                                                              c‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTT‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAT‑AAAATTATGATTTGGATCAAA‑Caaaaaaatt                                                               >  1:208574/1‑123 (MQ=255)
                                                                tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCATAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTT‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAT‑AAAAGTAATATTAGGATCAAA‑CAAAAC‑‑‑ATA‑Taaaa                                                       >  1:1955982/1‑128 (MQ=255)
                                                                tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAA‑AAAATTAAGATTTTGA‑AAAA‑CAAAAC‑t‑attata                                                          >  1:426806/1‑124 (MQ=255)
                                                                tATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTT‑‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAAATAATATTTTCATCAAC‑AAAAAA‑T‑ATA‑TCa                                                         >  2:3742997/1‑128 (MQ=255)
                                                                  tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTT‑‑‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAT‑AAAAATAAAATTTTGATCAAC‑AAAAAA‑A‑ATA‑ACaaa                                                       >  2:3863129/1‑128 (MQ=255)
                                                                  gaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTT‑‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAATTTATTATTTGTATAAAC‑AAAAAA‑T‑AAA‑TCaaa                                                       >  2:97053/6‑128 (MQ=255)
                                                                      cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTT‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAT‑AAAAGTAAGATTTGGATAAAA‑CACTAC‑T‑TTA‑‑Caaaaat                                                    >  1:3611821/1‑127 (MQ=255)
                                                                       tatgCTTTTTATTATAATTATCAACATTAAAAAGATTTAAAATTGTATTTTTTTGGC‑‑‑TTTTTTTTTCT‑‑‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAT‑AAAAGTAAGATTTGGATCAAC‑CAAAAC‑T‑ATA‑TCaaa                                                       <  1:4029398/125‑1 (MQ=255)
                                                                       tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑TAAAAT‑AAAATTATATTTTTGTTCAAC‑CAAAAT‑A‑ATA‑TAaaaaaat                                                   >  1:2421145/1‑127 (MQ=255)
                                                                       tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTGG‑‑‑‑‑‑AAAAAT‑AAATATAAATTTTGTATCAAC‑ACAAAA‑T‑ATa‑aaaaaaaaa                                                   >  1:3778504/1‑128 (MQ=255)
                                                                       tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTT‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAT‑AAAATTAAATTTTGGATGAAC‑AAAAAC‑T‑ATA‑Taaaaaaaaat                                                 >  2:3400056/1‑126 (MQ=255)
                                                                        aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTT‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑TAAAAT‑AAAAGTTATATTTGTTTAAAA‑CAAAAC‑T‑ATT‑TAAAAAAAAATa                                                >  1:2400032/1‑128 (MQ=255)
                                                                              tttATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑TTTTTTTATTTTTTTTTTTTT‑‑‑‑‑‑AAAAAA‑AAAAATAAAAATTTGAAAAAA‑AAAAAA‑A‑AAA‑AAAAAAAAAATaaaaaa                                           >  1:2688198/1‑128 (MQ=255)
                                                                                  ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAA‑AAAATTAATTTTTGTATAAAA‑AAAATA‑T‑ATT‑taaaaaaaattaaaaaaaat                                        >  1:2955698/1‑128 (MQ=255)
                                                                                  ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAA‑AAAAATATTAATTGGTTAACC‑CAAAAC‑T‑TTA‑TAAATAAAATTaaaaaaaaa                                        >  1:3341268/1‑127 (MQ=255)
                                                                                   tataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTT‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAA‑AAAATTATAATTTGGAT‑AAC‑AAAAAA‑A‑TTA‑TAAAAAAAATTtaaaaaaaaa                                       >  1:332444/1‑126 (MQ=255)
                                                                                    ataCTTATCAACATTACAACGCTATCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAAATAAAATTTTTATCAAA‑AAAAAA‑A‑TAA‑AAAAAAAAATTAAAAAAAAtag                                      >  2:3052758/1‑128 (MQ=255)
                                                                                     ttattATCAACATTAAAAATCTTTAAAAGTTTATTTTTTATGT‑‑‑TT‑‑‑‑‑‑‑‑GT‑‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAT‑AAAAGTAAGATTTGGATCAAC‑CAAAAC‑T‑ATA‑TCAAAAAAATTAAAAAAAAtagttta                                  <  2:3080491/125‑1 (MQ=255)
                                                                                     taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTT‑‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAATATTTTGAAAAAC‑CAAAAA‑A‑ATA‑AAAAAAAAATTaaaaaaaaaattt                                    >  2:3325722/1‑123 (MQ=255)
                                                                                     taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTT‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAA‑AAAATTAAAATTTTTATCAAC‑CAAAAA‑A‑ATA‑AAAAAAAAATTAAAAAAAAtagttt                                   >  1:1511546/1‑128 (MQ=255)
                                                                                      aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTT‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAA‑AAAATTAATATTTTGAAAAAC‑AAAAAA‑A‑ATA‑AAAAAAAAATTAAAAAAAAtaat                                     >  1:2492997/1‑126 (MQ=255)
                                                                                      aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAATAAATGGA‑AAAC‑CAAAACAA‑ATA‑AATAAAAAATTaaaaaaaaaattt                                    >  1:1238461/1‑123 (MQ=255)
                                                                                        ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAA‑AAAATTAATATTTGGTTAAAC‑CAAAAA‑T‑TTT‑TAAAAAAAATTAAAAAAAAtattttt                                  >  1:3952581/1‑127 (MQ=255)
                                                                                        ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTTTTTTA‑‑AAAAAA‑AAAAATAAGTTTTTGAACAAA‑AAAAAA‑T‑ATA‑AAAAAAAAATTAAAAAAAAtatttta                                  >  1:3117792/1‑128 (MQ=255)
                                                                                         tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTT‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑TAAATTAATATTTTTTAAAAA‑CAAAAA‑T‑ATT‑TAAAAAATATTAAAAAAAAtatttta                                  >  1:1658775/1‑128 (MQ=255)
                                                                                         tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTT‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAATATTTGGATAAAC‑AAAAAA‑T‑ATA‑TAAAAAAAATTAAAAAAAAtttttta                                  >  1:1114721/1‑128 (MQ=255)
                                                                                         tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTTTTTTTTAAAAAAT‑AAAATAAAGATTTGGATAAAA‑AAAAAA‑T‑AAT‑TAAAAAAAATTAAAAAAAAaaattt                                   >  1:1919504/1‑128 (MQ=255)
                                                                                          aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTT‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑TAAAAA‑AAAATTAATATTTTTAAAAAA‑CAAAAA‑T‑ATA‑AAAAAAAAATTAAAAAAAAaagttttt                                 >  2:3443985/1‑126 (MQ=255)
                                                                                           tCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTT‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAAGATTTTGAAAAAC‑AAAAAA‑A‑AAA‑ACAAAAAAATAAAAAAAAAtaatttattata                             >  2:2174821/1‑123 (MQ=255)
                                                                                            cAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAATATTTTGGAAAAC‑CAAAAA‑TAATA‑TAAAAAAAAATaaaaaataatttatgttt                               >  2:1282279/1‑116 (MQ=255)
                                                                                            cAACATTACAACGCTATCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTTTTTA‑‑‑AAAAAA‑AAAAATAAGTTTTGGAAAAAA‑CAAACC‑T‑AAA‑AAAAAAAAATTAAAAAAAAAATTTTTTTTGa                             >  1:852184/1‑128 (MQ=255)
                                                                                              aCATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTT‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAA‑AAAAGTAATATTTGGATAAAC‑CAAAAA‑T‑ATA‑TAAAAAAAATTAAAAAAAAtatttttatttt                             >  1:545467/1‑122 (MQ=255)
                                                                                               cATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAA‑AAAATTAAATTTTTGATAAAC‑CAAAAA‑T‑ATA‑AAAAAAAAATTAAAAAAAAaatttttttttatt                           >  2:877708/1‑120 (MQ=255)
                                                                                               cATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTT‑‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAAGTAAGTTTTGGAACAAC‑CAAAAA‑T‑ATA‑AAAAAAAAATTAAAAAAAAAAGTTTTTTTGAGtt                          >  2:3174773/1‑128 (MQ=255)
                                                                                                 ttACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTT‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAA‑AAAAATAAGATTTTG‑TAAACACAAAAA‑A‑ATA‑TAAAAAAAATAAAAAAAAAAAATTTTGTATAGtt                          >  2:2292288/1‑128 (MQ=255)
                                                                                                  tACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAA‑AAAATTATATTTTGGTTAAAC‑AAAAAT‑A‑ATA‑AAAAAAAAATAAAAAAAAAtatttatttttatttta                        >  2:1889813/1‑116 (MQ=255)
                                                                                                   aCAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTT‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAATATTTTGATAAAC‑CAAAAA‑T‑ATA‑TAAAAAAAAATAAAAAAAAtaatttattttatttaa                        >  1:2792067/1‑121 (MQ=255)
                                                                                                   aCAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTT‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAA‑AAAATTAATTTTTTTTTACAC‑CAAAAA‑T‑AAA‑TAAAAAAAATTAAAAAAAAAATTTTAATTTAtttta                        >  1:3915396/1‑127 (MQ=255)
                                                                                                   aCAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAAAATTTTTAAAAAA‑CAAAAA‑A‑ATA‑AAAAAAAAATTAAAAAAAAtattttatttaatattaa                       >  2:1521930/1‑120 (MQ=255)
                                                                                                    cAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAAAATTTTTAAAAAC‑AAAAAA‑T‑ATA‑AAAAAAAAATTAAAAAAAATAATTTATTTTATTTTaaa                      >  1:1005737/1‑128 (MQ=255)
                                                                                                    cAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTT‑‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAAGTAAAATTTGTATCAAC‑CAAAAA‑A‑AAA‑TAAAAAAATTTAAAAAAAATAGTTTTTTTGAGTTTaaaa                     >  2:3884627/1‑128 (MQ=255)
                                                                                                      aCGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTTTTTTTT‑‑‑TTTTTTTTTTTAT‑‑‑‑‑‑AAAAAA‑AAAAATAATATTTGGTAAAAA‑CAAAAA‑A‑TTA‑AAAAAAAAATTAAAAAAAATATTTTATTTTAATTTaaa                      >  1:172537/1‑128 (MQ=255)
                                                                                                      aCGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTT‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAT‑AAAAATAAAATTTGGTTCAAC‑CAAAAA‑T‑TTA‑AAAAAAAAATTAAAAAAAATATTTTATTTTAGGTTCaaa                     >  1:1153118/1‑128 (MQ=255)
                                                                                                      aCGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAA‑AAAAATATTATTTGTTAAAAA‑CAAAAA‑T‑TTA‑TAAAAAAAATTAAAAAAAAaattttattttattaaaaaag                    >  1:385493/1‑117 (MQ=255)
                                                                                                      aCGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTT‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAT‑AAAATTAAGATTTGGATCAAC‑CAAAAA‑T‑ATA‑TAAAAAAAATAAAAAAAAATAGTTTTTTTTAGTTTaaaaaaa                  >  1:995/1‑125 (MQ=255)
                                                                                                       cgatttCAATGTTTATTTTTTTTGA‑‑‑TT‑‑‑‑‑‑‑‑GT‑‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAT‑AAAAGTAAGATTTGGATCAAC‑CAAAAC‑T‑ATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGc                <  2:3570466/125‑1 (MQ=255)
                                                                                                        gCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTTTTTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAA‑AAAATTAATATTTGGATAAAC‑AAAAAA‑A‑ATT‑TAAAAAAAATAAAAAAAAATATTTTATTTgttttaaaaaa                    >  1:145813/1‑118 (MQ=255)
                                                                                                        gCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTT‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAAAATTTTGTAAAAC‑CAAAAA‑T‑ATA‑TAAAAAAAATAAAAAAAAATATTTTATTTTATTTTaaaaaa                   >  1:2899952/1‑126 (MQ=255)
                                                                                                         cTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTT‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAA‑AAAAGAAATATTTTGATAAAC‑ACAAAC‑T‑AAA‑AAAAAAAAAAAAAAAAAAAAAATTTAATTTAgataaacaaag                  >  1:3215965/1‑118 (MQ=255)
                                                                                                         cTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAATTTTTTTTTAAAA‑CAAAAA‑A‑AAA‑TAAAAAAAATAAAAAAAAAAATTTTTTTTGTTTTTAAAAtaag                 >  2:3802930/1‑125 (MQ=255)
                                                                                                         cTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAA‑AAAATTAATTTTTTGAAAACC‑CAAAAA‑T‑AAT‑AAAAAAAAATTAAAAAAAAAATTTTATTTGTTTTAAAAATCtt                 >  2:3108460/1‑127 (MQ=255)
                                                                                                            tCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTTT‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAATATTTGTATAAAC‑ACAAAC‑T‑AAT‑ACAAAAAAATTAAAAAAAAAAGTATAATTGAATTTCaaaatagca               >  2:1050555/1‑122 (MQ=255)
                                                                                                              aaaGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTT‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑TAAAAT‑AAATTTAATATTTTGAAACAA‑CAAAAA‑A‑ATA‑TAAAATAAATAAAAAAAAAATTTTTTGTTTAGTTTaaaaatataaaatat          >  2:2595140/1‑117 (MQ=255)
                                                                                                               aaGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTT‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAAAATTTGGATCAAC‑CAAAAA‑T‑ATA‑TAAAAAAAATTAAAAAAAAATATTTATTTTATTTTAAAAACTTCAtatata         >  2:3603006/1‑128 (MQ=255)
                                                                                                                aGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTT‑‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAAATTTTGGATAAAC‑CAAAAA‑T‑ATT‑TAAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAATATGaataaata         >  1:1367559/1‑128 (MQ=255)
                                                                                                                  tgtATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTT‑‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑TAAAATAAAAATTAAAATTTGTAAAAAC‑CAAAAA‑A‑TTT‑AAAAAAAAATAAAAAAAAAAATTTTATTTGTTTTTAAAAtaggaaaatatat        >  2:3026516/1‑116 (MQ=255)
                                                                                                                   gtATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑GTTTT‑‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑TAAAAT‑AAAAGTAAATTTTGGTTAAAC‑CAAAA‑‑A‑ATATTAAAAAAAATTTAAAAAAATATTTTATTTTATGTTAAAATCTGCAtatatatt       >  1:567594/1‑126 (MQ=255)
                                                                                                                   gtATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTTT‑‑‑‑‑‑AAAAAT‑AAAATTAAGATTTTGATAAAC‑AAAAAA‑T‑ATA‑TAAAAAAAATTAAAAAAAATTTTTAATTTTATTTAAAAATCTACATTTATAGTaaaa   >  1:493861/1‑128 (MQ=255)
                                                                                                                                                |                                                                                                                                  
TTTTAATTTTTTTTAT‑AAAAAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCC‑TATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGC‑‑‑TT‑‑‑‑‑‑‑‑G‑‑‑‑‑‑TTTTT‑‑‑TTTTTTTTTTTGT‑‑‑‑‑‑AAAAAT‑AAAAGTAAGATTTGGATCAAC‑CAAAAC‑T‑ATA‑TCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAA  >  CP016816/203767‑204008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑