Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4860T.60.8% 129.9 / inf 286intergenic (+264/‑411)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (16/77);  new base . (71/73);  total (114/172)
Fisher's exact test for biased strand distribution p-value = 4.86e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.26e-02

Only 100 of 310 total aligned reads displayed.

AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATA  >  CP016816/202359‑202602
                                                                                                                                |                                                                                                                      
  ttAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑ATGTTTATCTTCACAAATAAAAAAAAAACAATCCACttaa                                                                                                                      >  2:3471055/1‑126 (MQ=255)
    aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATACTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTATATATCTTCACAAATAAAAAAAAAACAATCCCAttaaaa                                                                                                                    >  2:1008373/1‑124 (MQ=255)
       gtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTTTTTATATTCACAAATAAAAAGAAAACAATACACttaaaaatt                                                                                                                 >  1:937581/1‑121 (MQ=255)
           ataataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTAT‑TTGTTTATCTTAACAAATAAAAAAAAAAAAATACC‑‑aataaa‑aaat‑aaaa                                                                                                         >  1:3163539/1‑128 (MQ=255)
            taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCAC‑‑Attaaa‑aatt‑aaaaa                                                                                                        >  1:3317224/1‑128 (MQ=255)
            taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAAACCACtt‑‑‑aa‑aaat‑aaaaaa                                                                                                       >  2:3632105/1‑128 (MQ=255)
             aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCAAC‑‑Ttaaa‑aatt‑aaaaaa                                                                                                       >  2:3915634/1‑128 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTAT‑TTTTTTATCTTCACAAATAAAAAAAAAAAAATACACTaaaaaa‑aaaa‑aaaaaa                                                                                                       >  2:2180075/1‑128 (MQ=255)
               taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAAACAC‑‑‑ATAAA‑AAAT‑aaaaaaaaa                                                                                                    >  2:2255460/1‑128 (MQ=255)
                agacTTAATGTTTATTAAAATAACATAAACTTAAAAATTATTATAAAGTATATCCTCGTTTTATATTTTTTTAT‑TTTTTTATATTCACAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AATT‑aaaaaaaaa                                                                                                    <  1:2052355/128‑1 (MQ=255)
                   gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATCATATTTATATATTTTTTTAT‑TTTTTTATATTAAAAAATAAAAAAAAAAAAATAAAATT‑‑‑AA‑AAAT‑aaaaaaaaaaaaa                                                                                                >  1:2900333/1‑128 (MQ=255)
                   gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAAACCCATTAaaaa‑aaaa‑aaaaaaaaaa                                                                                                   >  2:2567394/1‑128 (MQ=255)
                    ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTACACAAATAAAAAAAAAACAAACCCC‑‑‑TAAA‑AAAT‑aaaaaaaaaaaaaa                                                                                               >  2:3780986/1‑128 (MQ=255)
                    ttAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTAACTTAACAAATAAAAAAAAAAAAAAACC‑‑ATAAAA‑AAAT‑aaaaaaaaaaaaa                                                                                                >  2:349852/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaa                                                                                               >  2:3253134/1‑128 (MQ=255)
                     tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAAT‑AAAAAAAAACAATCACC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaa                                                                                              >  2:3690617/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATCCTCGTTATCTATTTTTTTAT‑TTGTTTATCTTAACAAATAAAAAAAAAAAAAAAAACAAT‑‑AA‑AAAT‑aaaaaaaaaaaaaaa                                                                                              >  2:1464047/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATTTATATAATCGTGATCTATTTATATAT‑TTATTTATATTAACAAATAAAAAAAAAAAAAT‑‑AAAATTAAA‑AATT‑aaaaaaaaaaaaaaa                                                                                              >  2:5655/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaa                                                                                              >  2:1033698/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaa                                                                                              >  2:3221976/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaa                                                                                              >  2:1297731/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCAAC‑‑TTAAA‑AAAT‑aaaaaaaaaaaaaaa                                                                                              >  2:1242994/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATATTAACAAAT‑AAAAAAAAACAATAAACTT‑‑‑AA‑AAAT‑aaaaaaaaaaaaaaaaa                                                                                            >  2:2915/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGATTATCTTCACAAATAAAAAAAAAAAAAACCC‑‑‑ATAAA‑AAAT‑aaaaaaaaaaaaaaaa                                                                                             >  2:857957/1‑128 (MQ=255)
                      aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTAT‑TATTTTATCTAAAAAAATAAAAAAAAAACAA‑‑‑AAAAATAAA‑AAAT‑aaaaaaaaaaaaaaaa                                                                                             >  2:2468819/1‑128 (MQ=255)
                       aGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaa                                                                                            >  1:3041044/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaa                                                                                            >  2:3140021/1‑128 (MQ=255)
                        ggTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAAAACAC‑‑‑TAAA‑AAAT‑aaaaaaaaaaaaaaaaaa                                                                                           >  2:2316245/1‑128 (MQ=255)
                         gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAAAAATCAC‑‑‑ATAAA‑AAAT‑taaaaaaaaaaaaaaaaaa                                                                                          >  1:2266349/1‑128 (MQ=255)
                         gTTAATTAAAATACCATAAACTTAATAATTCTTAAAATGAAGATCCTCGTGAACTAATATATAAA‑TTAATAAACAACACAAATAAAAAAAAAAAAAAAACATT‑‑‑AA‑AAAT‑aaaaaaaaaaaaaaaaaaa                                                                                          >  1:1920593/1‑128 (MQ=255)
                          ttaaataaAATACAAAAAAATTAATAATTATAATAATTTATATCCTCGTTATCTATTTTTTTAT‑TTTTTTATCTAAACAAAAAAAAAAAAAACAAACCCC‑‑TTAAA‑AAAT‑aaaaaaaaaaaaaaaaaaa                                                                                          <  1:3854964/128‑1 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCTTATAATGTATATCCTCTATATCTATTAATATAT‑ATAAATATATAAACAAAAAAAAAAAAAACAA‑‑‑ACAAATAAA‑AAAT‑taaaaaaaaaaaaaaaaaaaa                                                                                        >  2:2716691/1‑128 (MQ=255)
                           taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTTTTTATCTTCACAAATAAAAAAAAAACAATCAAC‑‑‑TAAA‑AAAT‑taaaaaaaaaaaaaaaaaaaa                                                                                        >  2:2102941/1‑128 (MQ=255)
                            aattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTAATTTTTTAT‑TTGATTATCTACACAAATAAAAAAAAAAAAATACC‑‑AAAAAA‑AAAT‑aaaaaaaaaaaaaaaaaaaaa                                                                                        >  1:2033543/1‑128 (MQ=255)
                             attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAAT‑‑CAAATTAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                       >  1:3074780/1‑127 (MQ=255)
                             attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                       >  2:3896157/1‑127 (MQ=255)
                             attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑ATAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaa                                                                                       >  1:3455173/1‑127 (MQ=255)
                             attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAAT‑AAAAAAAAACAAAACCC‑‑ATAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaaa                                                                                      >  1:3273736/1‑126 (MQ=255)
                             attaaAATAAAATAAAATTTATAATTTATATAATTTTAATACACCTTTTTAATTTTTTTTT‑TTTTTTAAATTAACAAAAAAAAAAAAAAAAAACCCC‑‑ATAAA‑AATT‑aaaaaaaaaaaaaaaaaactaa                                                                                       <  1:4002832/128‑5 (MQ=255)
                              ttaaAATAACATAAAATTAATAATTCTAAATATGTATAAACTCTTGATATATTTTTTTAT‑TTTTTTATATTAAAAAATAAAAAAAAAACAAACCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTa                                                                                     <  1:2316245/128‑1 (MQ=255)
                                taaataaaataAAATTAATAATTAATAAAATTAATATCATATTTTTATAATTTTTAAT‑TTTTTTATATTAAAAAATAAAAAAAAAAAAATACCC‑‑ATAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTaa                                                                                    <  1:1536773/127‑1 (MQ=255)
                                aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAAAAAAAAAAAAACAAACCCC‑‑‑TAAA‑AAAT‑aaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                   >  2:2643029/1‑123 (MQ=255)
                                aaaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGAGATCTATTTTTTTAT‑TTGTTTATATAAAAAAATAAAAAAAAAACAATAAAC‑‑TTAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaaata                                                                                    >  1:3373292/1‑124 (MQ=255)
                                 aaaTACCATAAACTTAATAATTCTTATAATTTAGATCATCGTGATCAAATATATTAA‑TAATATATCTTCACAAATAAAAAAAAAACAAAACCATTAAAAA‑Taaa‑aaaaaaaaaaaaaaaaaaaaaaaa                                                                                     >  1:1674007/1‑125 (MQ=255)
                                  aataaaaTAAAATTAATAATTATTATAATTTATATCCTCGTTATTTATTTTTTTAT‑TTTTTTATCTTCAAAAAAAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTaaaaa                                                                                 <  1:377438/122‑1 (MQ=255)
                                  aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAAAACAC‑‑TAAAA‑AATT‑aaaaaaaaaaaaaaaaaaaaaaaaaac                                                                                  >  2:3541626/1‑122 (MQ=255)
                                   aTACCATAAAATTAAAAATTCTTTTAAATTTCTTCCTCGTTTTCTATTTTTTTAT‑TTTTTTTTATTAAAAAAAAAAAAAAAAAAAATCCCC‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTaaaa                                                                                  <  2:3055489/128‑1 (MQ=255)
                                    taacATAAACTTAATAATTATTATAATTTATATCCTCTTTATATATTTTTTTAT‑TTTTTTATCTTCAAAAAAAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                              <  1:236119/125‑1 (MQ=255)
                                       cATAAAATTAAAAAATTTTAAAATTTAGAATCAAGTTAATTATTTTTTTAT‑TTTTTTATAATAAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAaaacaaa                                                                             <  1:3568004/128‑1 (MQ=255)
                                       aaaaaaaataataaTTTTTAAAATTTATATACTATTTATTTATTTTTTTAT‑TTTTTTATATTAAAAAAAAAAAAAAAAAAAATCCCC‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAaaacaa                                                                              <  2:3987292/120‑1 (MQ=255)
                                        aTAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAAATAaaaaaaaaa                                                                            >  1:3465111/1‑127 (MQ=255)
                                          taatatataaatTATTATAATTTATATTCTGTTTATATTTATTTTTTT‑TTTTTTATAATCACAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                        <  2:952887/119‑1 (MQ=255)
                                           aaattAAAAATTCTTATAAATTTTATACTAGTTTTTTATTTTTTTTT‑TTTTTTATATTCAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTa                                                                        <  2:374099/125‑1 (MQ=255)
                                           aaCTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAAACCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAACAAAAAAAaaccaatatta                                                                         >  2:412318/1‑123 (MQ=255)
                                            acataataaTTCTTATAATTTATATAATTTTTTTTTTTTTTTTTAT‑TTGTTTATATTAAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTAt                                                                       <  2:3182601/125‑1 (MQ=255)
                                            aattAATAAATAATATAATTTATATCCTTGTGATATATTTTTTTAT‑TTTTTTAATTTAAAAAAAAAAAAAAAAACAAACCCCTT‑‑‑AA‑AAAT‑‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                    <  1:3528385/126‑1 (MQ=255)
                                                aataatTTTTATAATTTATATATTTTTTTTTTATTTTTTTAT‑TTTTTTATATTTAAAAAAAAAAAAAAAAAAAATCCCTTT‑‑AA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTc                                                                    <  2:488783/128‑1 (MQ=255)
                                                   aatTATTATAATTTATATACTCTTTTTCTATTTTTTTAT‑TTTTTAATAATCACAAAAAAAAAAAAAACAAACCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTa                                                                 <  1:2186035/128‑1 (MQ=255)
                                                     tctttAAAATTTATATCAACGTTATATAATTTTTTAT‑TTTTTTATATTAAAAAAAAAAAAAAAAAAAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTaaaa                                                              <  1:2683912/125‑1 (MQ=255)
                                                      taatataATGTATATACTCGTTATCTATTTTTTTAT‑TTGTTTATATTAAAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAAt                                                             <  1:2008620/125‑1 (MQ=255)
                                                             atttagatacgagTGATATATTTTTTTTT‑TTGTTTATATTCAAAAAAAAAAAAAAAAAAAACCC‑‑‑ATAAA‑AAAT‑‑‑‑TAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                   <  2:1970837/116‑1 (MQ=255)
                                                             aattatattaatgTGATTTATTTTTTTTT‑TTTTTTTAATTAAAAAAAAAAAAAAAAAAAAAACCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCta                                                       <  1:3893631/116‑1 (MQ=255)
                                                                    taatagttatatatttttttat‑tttttTATATAAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                <  1:320945/117‑1 (MQ=255)
                                                                     tcttttttttttttttttttt‑tttttTATATTAAAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                               <  2:3864658/116‑1 (MQ=255)
                                                                     actatttttttatttttttat‑tttttTAAATTAAAAAAAAAAAAAAAAAAAAAAACC‑‑TTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                              <  2:1609997/118‑1 (MQ=255)
                                                                      tattttttttttttttttAT‑TTTTTAATATT‑AAAAATAAAAAAAAAAAAATACCC‑TTAAAA‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                              <  2:4008534/117‑1 (MQ=255)
                                                                        cgttttttATTTTTTTAT‑TTTATTATAATAACAAAAAAAAAAAAAACAAAACCC‑‑ATAAA‑AAAT‑‑‑‑AAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                         <  1:773740/121‑1 (MQ=255)
                                                                        attttaattttttttttt‑tttttAATAATAAAAAAAAAAAAAAAAAAAATACC‑‑‑ATAAA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                           <  1:2567394/119‑1 (MQ=255)
                                                                        agttttattttttttttt‑tttttAAAATTAAAAAAAAAAAAAAAAAAAAACCCC‑‑TTAAA‑AAAT‑‑TAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                           <  2:310200/119‑1 (MQ=255)
                                                                         attttttATTTTTTTATATTTATTATATAAAAAAAAAAAAAAAAAAAAAAACCC‑‑ATAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                           <  1:825060/122‑1 (MQ=255)
                                                                          ttatttatttttttat‑tttttTATAAAAAAAAATAAAAAAAAAAAAAT‑ACAATTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                           <  1:2638218/123‑1 (MQ=255)
                                                                           tattattttttttAT‑TTTTTAATATTAAAAAAAAAAAAAAAAAAAAAACCC‑ATAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                          <  1:2816169/122‑1 (MQ=255)
                                                                           tatatatttttttat‑tttttTATATTAAAAAAAAAAAAAAAAAAAATCCCC‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                          <  1:2499439/124‑1 (MQ=255)
                                                                           taaatatttttttat‑tttttTATCTTAAAAAATAAAAAAAAAAAAAACCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                         <  1:3632105/124‑1 (MQ=255)
                                                                               tattttttatt‑tttTTTATATTAAAAAAAAAAAAAAAAAAAATCCCATT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                    <  1:3589814/128‑1 (MQ=255)
                                                                               tATTTTTTTAA‑TTTTTTATATTAAAAAAAAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                    <  1:3106958/128‑1 (MQ=255)
                                                                                ttttttttat‑tttttttatATAAAAAATAAAAAAAAAAAAATCAC‑‑ATTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                    <  1:1586167/127‑1 (MQ=255)
                                                                                 attttttaa‑ttttttaaAATCAAAAAAAAAAAAAAAAAAATACAC‑TTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                    <  1:1177988/127‑1 (MQ=255)
                                                                                   tttttAT‑TTTTTTATATTAAAAAAAAAAAAAAAAAAAATTCCCTTAAAAATAAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                    <  1:1058733/128‑1 (MQ=255)
                                                                                        aT‑TTTTTTATATTAAAAAATAAAAAAAAAAAAAT‑‑ACAATTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                            <  1:2102941/128‑1 (MQ=255)
                                                                                           ttGTTTATTTTCAAAAATAAAAAAAAAAAAATCCCATAAAAAA‑TAAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                            <  2:335236/128‑1 (MQ=255)
                                                                                             ttttaaaataaaaaaaaaaaaaaaaaCAATCCC‑‑ATTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                        <  1:3934494/116‑1 (MQ=255)
                                                                                             ttttATTTTAAAAATTTAAAAAAAAAAAATATCCTTAAATA‑TTAA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGa                          <  1:6056/127‑1 (MQ=255)
                                                                                             ttttATATTTAAAAAAAAAAAAAAATAAATACCC‑‑TTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGata                        <  2:3070025/127‑1 (MQ=255)
                                                                                              tttaattttaaaaaaaaaaaaaaaaaaaaACCC‑‑TTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                      <  2:3818903/117‑1 (MQ=255)
                                                                                                 tatattaaaaaaaaaaaaaaaaaaaaaaTCATTAAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                      <  2:3444997/120‑1 (MQ=255)
                                                                                                 atattaaaaaaTAAAAAAAAAACAAAACCC‑‑TTAAA‑AAAT‑‑AAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                   <  1:3660835/120‑1 (MQ=255)
                                                                                                 atattaaaaaaTAAAAAAAAAAAAAT‑TACATTAAAA‑ATTA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTg                     <  1:1420625/120‑1 (MQ=255)
                                                                                                 aaaataaaaaaaaaaaaaaaaaaaATACACA‑‑TAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                    <  1:794742/120‑1 (MQ=255)
                                                                                                   tttaaaaaaaaaaaaaaaaaaaATAACCTAAAAAA‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                    <  2:3454795/122‑1 (MQ=255)
                                                                                                   attaaaaaaaaaaaaaaaaaaaaaACCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                  <  1:1339680/122‑1 (MQ=255)
                                                                                                    ttaataaaTAAAAAAAAAAAAATAACC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACat                 <  1:449207/123‑1 (MQ=255)
                                                                                                      ataaaaaaaaaaaaaaaaaaaaaACTCTTAAA‑AATTAAAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                  <  2:3290978/125‑1 (MQ=255)
                                                                                                      aaaaaaaaaaaaaaaaaaaATACCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataa               <  1:469729/125‑1 (MQ=255)
                                                                                                        aaaaTAAAAAAAAAAAAATAACC‑‑ATAAA‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTACCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata             <  1:3398081/127‑1 (MQ=255)
                                                                                                            tAAAAAAAAAAAAATCACAA‑‑TAAA‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatata         <  1:1811652/128‑1 (MQ=255)
                                                                                                             aaaaaaaaaaaaAT‑ACCTTTT‑‑A‑AATT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc       <  1:1026002/128‑1 (MQ=255)
                                                                                                              aaaaaaaaaCAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAAAAAAAAAA‑‑TTAAAAGAAAGATAATTTTTTAAATTAGACAATTAAACCAAATTTTATTTTTTAAAAAAGTTTATAACTTAatatattataaa    >  1:3128242/1‑122 (MQ=255)
                                                                                                               aaaaaaaaaaATACCC‑TTTAAA‑AATA‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc       <  1:1383230/128‑1 (MQ=255)
                                                                                                                   aaaaCAATCCCC‑‑TTAAA‑AATT‑AAAAAAAAAAAAAAAAAAAAAATAAAAACAAAGACAATTTAATAAAATTACAAATTATACACCATTTTATTTTTAAAATAAGATAATTACATAatatattatttatt  >  1:1490791/1‑120 (MQ=255)
                                                                                                                                |                                                                                                                      
AGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTAT‑TTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAA‑AAAT‑AAAAAAAAAAAAAAAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATA  >  CP016816/202359‑202602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑