mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 1,093,352 | 1 | .→G | 0.7% | 4.6 0.0 ‑0.7 | 414 | coding (477/1359 nt) | ycdT | diguanylate cyclase, membrane‑anchored |
| * | NC_000913 | 1,962,220 | 0 | A→. | 1.3% | 3.3 0.0 ‑0.1 | 300 | coding (249/489 nt) | yecT | uncharacterized protein |
| * | NC_000913 | 3,190,246 | 1 | .→A | 0.9% | 3.2 ‑0.5 ‑0.3 | 336 | coding (366/750 nt) | yqiH | putative periplasmic pilin chaperone |
| * | NC_000913 | 4,507,837 | 0 | G→C | 100.0% | 2.5 | 4 | L261V (CTT→GTT) | insI1 | IS30 transposase |
| * | NC_000913 | 4,039,003 | 0 | T→G | 100.0% | 2.2 | 4 | noncoding (1485/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon |
| * | NC_000913 | 3,427,349 | 0 | A→C | 100.0% | 2.0 | 3 | noncoding (1414/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | NC_000913 | 1,293,389 | 1 | .→A | 0.9% | 1.8 0.0 ‑0.3 | 217 | intergenic (‑467/‑138) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| * | NC_000913 | 2,802,370 | 1 | .→A | 0.9% | 1.8 0.0 ‑0.5 | 223 | coding (1023/2145 nt) | nrdE | ribonucleoside‑diphosphate reductase 2, alpha subunit |
| * | NC_000913 | 3,427,354 | 0 | G→T | 100.0% | 1.8 | 3 | noncoding (1409/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | NC_000913 | 460,269 | 1 | .→C | 0.9% | 1.6 0.0 ‑0.7 | 218 | coding (1382/2355 nt) | lon | DNA‑binding ATP‑dependent protease La |
| * | NC_000913 | 964,632 | 2 | .→T | 0.9% | 1.6 0.0 ‑0.8 | 229 | coding (313/2265 nt) | ycaI | ComEC family inner membrane protein |
| * | NC_000913 | 3,427,323 | 0 | A→C | 100.0% | 1.6 | 3 | noncoding (1440/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | NC_000913 | 2,104,342 | 1 | .→A | 0.9% | 1.5 0.0 ‑0.4 | 231 | coding (168/1119 nt) | wbbK | lipopolysaccharide biosynthesis protein |
| * | NC_000913 | 964,632 | 1 | .→G | 0.9% | 1.4 0.0 ‑0.8 | 229 | coding (313/2265 nt) | ycaI | ComEC family inner membrane protein |
| * | NC_000913 | 2,784,336 | 1 | .→T | 0.8% | 1.4 0.0 ‑0.2 | 251 | pseudogene (676/1374 nt) | ypjC | pseudogene |
| * | NC_000913 | 2,513,218 | 1 | .→T | 0.8% | 1.3 0.0 ‑0.4 | 248 | coding (177/1203 nt) | nupC | nucleoside (except guanosine) transporter |
| * | NC_000913 | 3,424,119 | 0 | T→A | 100.0% | 1.3 | 2 | noncoding (2665/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 1,217,089 | 1 | .→A | 0.9% | 1.2 0.0 ‑0.2 | 230 | intergenic (+93/‑239) | ymgC/ycgG | Blue light, low temperature and stress induced protein/putative membrane‑anchored cyclic‑di‑GMP phosphodiesterase |
| * | NC_000913 | 1,299,595 | 0 | G→T | 100.0% | 1.2 | 1 | intergenic (+350/‑1587) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,468,192 | 0 | G→C | 100.0% | 1.2 | 1 | A212G (GCC→GGC) | insD1 | IS2 transposase TnpB |
| * | NC_000913 | 2,802,370 | 2 | .→A | 0.9% | 1.2 0.0 ‑0.3 | 223 | coding (1023/2145 nt) | nrdE | ribonucleoside‑diphosphate reductase 2, alpha subunit |
| * | NC_000913 | 2,929,011 | 1 | .→G | 0.9% | 1.2 0.0 ‑0.5 | 222 | coding (783/1290 nt) | sdaC | putative serine transporter |
| * | NC_000913 | 3,427,396 | 0 | G→. | 100.0% | 1.2 | 2 | noncoding (1367/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,696,339 | 2 | .→A | 0.9% | 1.2 0.0 ‑0.3 | 220 | intergenic (‑154/‑119) | yhjR/bcsE | DUF2629 family protein/cellulose production protein |
| * | NC_000913 | 1,300,461 | 0 | A→C | 100.0% | 1.1 | 1 | intergenic (+1216/‑721) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 2,069,187 | 0 | A→C | 100.0% | 1.1 | 8 | V224G (GTG→GGG) | insD1 | IS2 transposase TnpB |
| * | NC_000913 | 3,696,339 | 1 | .→C | 0.9% | 1.1 0.0 ‑0.2 | 220 | intergenic (‑154/‑119) | yhjR/bcsE | DUF2629 family protein/cellulose production protein |
| * | NC_000913 | 198,872 | 1 | .→G | 0.9% | 1.0 0.0 ‑0.3 | 215 | coding (945/2433 nt) | bamA | BamABCDE complex OM biogenesis outer membrane pore‑forming assembly factor |
| * | NC_000913 | 1,299,586 | 0 | T→G | 100.0% | 1.0 | 1 | intergenic (+341/‑1596) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,300,471 | 0 | A→C | 100.0% | 1.0 | 1 | intergenic (+1226/‑711) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,427,382 | 0 | A→C | 100.0% | 1.0 | 2 | noncoding (1381/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | NC_000913 | 1,300,660 | 0 | C→A | 100.0% | 0.9 | 1 | intergenic (+1415/‑522) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,365,841 | 0 | A→T | 100.0% | 0.9 | 4 | I293N (ATC→AAC) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 3,427,313 | 0 | A→C | 100.0% | 0.9 | 3 | noncoding (1450/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,437,754 | 1 | .→T | 0.9% | 0.9 0.0 ‑0.0 | 217 | coding (48/939 nt) | ytfI | uncharacterized protein |
| * | NC_000913 | 1,299,532 | 0 | T→G | 100.0% | 0.8 | 1 | intergenic (+287/‑1650) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 1,299,538 | 0 | T→G | 100.0% | 0.8 | 1 | intergenic (+293/‑1644) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| * | NC_000913 | 3,427,310 | 0 | C→A | 100.0% | 0.8 | 3 | noncoding (1453/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,427,376 | 0 | C→T | 100.0% | 0.8 | 2 | noncoding (1387/1542 nt) | rrsD | 16S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,221,282 | 1 | .→A | 0.6% | 0.5 0.0 ‑0.1 | 332 | coding (1206/2187 nt) | arpA | ankyrin repeat protein |
| * | NC_000913 | 4,505,924 | 1 | .→A | 0.9% | 0.5 0.0 ‑0.1 | 220 | coding (638/1119 nt) | yjhC | GFO/IDH/MOCA family putative oxidoreductase. NAD(P)‑dependent |