Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_000913	4,039,003	0	T→G	100.0%	2.2	4	noncoding (1485/2905 nt)	rrlA	23S ribosomal RNA of rrnA operon
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (3/0):  ref base (1/0):  total (4/0)

GGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAGCGTGTAGGCTGGTTTTCCAGGCAAATCCGG  >  NC_000913/4038709‑4039018                                                                                                                                                                                                                                                                                                       |                ggAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGACGTAGTCGATGGGAAACCGGTTAATATTCCTGTACTTGGTGTTACTGCGACGGGGGGACGGTGAAGGCTTTGTTGGCCGGGAGCCGGTTGTCCCGGTTTAAGCGTGTATGCTGGTTGTCCAgg           >  2:1022307/1‑301 (MQ=2)       ttCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGACAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGCGGCCGACAGGCGTAGTCGATGGGAAACAGGTTACTATTCCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTTTACCGGTTTGAGGGGGTCGGCTGGTTGTCCCGGAAAAt      >  1:562561/1‑300 (MQ=11)         cTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGCGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGATGTTACTGCGAAGGGGGTACGGAGAAGGCTGTGTTGGACGGGCGACGGTTGTCCCGGGTTAAGCGTGTAGGCTGGGTTTCCAGGCAACTCCg   >  2:387816/1‑301 (MQ=2)         cTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCGGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCGTGTCCGACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGGGGCCGAGAGCGTTAGTCGATGGGAAACAGGAGAATATTCCTGTACTTGGTGTTACTCCGGATGGGGGACGGAGAAGGCTCTGTTGGCCGGGCGGCTGTTGTTCTGGTTGAAG‑GTGTAGGGTGGGTGTTCAgggcaactcgg  >  1:291901/1‑292 (MQ=11)                                                                                                                                                                                                                                                                                                       |                GGAGCGTTCTGTAAGCCTGTGAAGGTGTGCTGTGAGGCATGCTGGAGGTATCAGAAGTGCGAATGCTGACATAAGTAACGATAAAGCGGGTGAAAAGCCCGCTCGCCGGAAGACCAAGGGTTCCTGTCCAACGTTAATCGGGGCAGGGTGAGTCGACCCCTAAGGCGAGGCCGAAAGGCGTAGTCGATGGGAAACAGGTTAATATTCCTGTACTTGGTGTTACTGCGAAGGGGGGACGGAGAAGGCTATGTTGGCCGGGCGACGGTTGTCCCGGTTTAAGCGTGTAGGCTGGTTTTCCAGGCAAATCCGG  >  NC_000913/4038709‑4039018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.