Read alignment evidence...
	seq id	position		change	freq	score	reads	annotation	genes	product
*	NC_000913	3,427,382	0	A→C	100.0%	1.0	2	noncoding (1381/1542 nt)	rrsD	16S ribosomal RNA of rrnD operon
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (2/0):  ref base (0/0):  total (2/0)

CCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCTGTAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGCA‑ACCCACTCCCATGGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGTAT‑TCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATC  >  NC_000913/3427111‑3427458                                                                                                                                                                                                                                                                                 |                                                                              cccTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCTGTAGAGGTTTTACTGCTCATTTTAATCAGACAATCTGTGTGAGCACTTTAAAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTACCCTACGGTTACCTTGTTACGAATTCACCCCAGTCATGACTCCCACAGTGGTAAGCTCCCTCCCGACGGTTACGCCCACTACTGCTTATGCACACCCA‑TCCCCTGGTTGGAACGGCGATCTGTACCAGGTCCGTGCACCTATGTCCCCGT‑GCATTcgtgcccaca                                                 >  1:766579/1‑292 (MQ=11)                                                 gTTTTACTGCACATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGATTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTACCCTACGGTTACCTTGTTACGACTTCACACCAGTCATGCATCTCAAAGTGGTGAGCGCCCTCCAGCAGGGTCAGCTGCGTACTCCTTTTGCA‑AACCACCACCACGGCGTGAAGAGAGGAGTGTCCTAGGCCCGGGCACGTAT‑CCACGTTCACATTCTGATCCCCGATTACTATCTATTCTGCCCTCCTGGatgagacttgcacaccaccatc  >  1:767058/1‑279 (MQ=0)                                                                                                                                                                                                                                                                                 |                                                                              CCCTTATCAGGGGTGCGCTCTAACCACCTGAGCTACAAGCCTGTAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTACCTTGTTACGACTTCACCCCAGTCATGAATCACAAAGTGGTAAGCGCCCTCCCGAAGGTTAAGCTACCTACTTCTTTTGCA‑ACCCACTCCCATGGTGTGACGGGCGGTGTGTACAAGGCCCGGGAACGTAT‑TCACCGTGGCATTCTGATCCACGATTACTAGCGATTCCGACTTCATGGAGTCGAGTTGCAGACTCCAATC  >  NC_000913/3427111‑3427458

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.