mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3683801 = | 30 (0.730) | 5 (0.130) | 5/272 | 4.8 | 15.2% | coding (1817/1989 nt) | yhjK | cyclic‑di‑GMP phosphodiesterase |
| ? | NC_000913 | 3683817 = | 27 (0.690) | coding (1801/1989 nt) | yhjK | cyclic‑di‑GMP phosphodiesterase | |||||
| * | ? | NC_000913 | = 3790298 | 38 (0.930) | 4 (0.100) | 4/266 | 5.2 | 10.4% | intergenic (‑218/+21) | waaH/tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding |
| ? | NC_000913 | = 3790302 | 33 (0.860) | intergenic (‑222/+17) | waaH/tdh | LPS(HepIII)‑glucuronic acid glycosyltransferase/L‑threonine 3‑dehydrogenase, NAD(P)‑binding | |||||
| * | ? | NC_000913 | 4542688 = | 33 (0.810) | 4 (0.100) +A |
4/282 | 5.5 | 10.5% | intergenic (+54/‑428) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542993 = | 36 (0.880) | intergenic (+359/‑123) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 2775871 = | 36 (0.880) | 3 (0.080) | 3/268 | 5.8 | 7.9% | intergenic (+57/‑46) | ypjI/yfjX | pseudogene, CP4‑57 putative prophage remnant,Phage or Prophage Related/CP4‑57 prophage, putative antirestriction protein |
| ? | NC_000913 | 2775894 = | 36 (0.930) | intergenic (+80/‑23) | ypjI/yfjX | pseudogene, CP4‑57 putative prophage remnant,Phage or Prophage Related/CP4‑57 prophage, putative antirestriction protein | |||||
| * | ? | NC_000913 | = 609415 | 39 (0.950) | 3 (0.080) | 3/268 | 5.8 | 7.6% | intergenic (+238/+44) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex |
| ? | NC_000913 | = 609431 | 36 (0.930) | intergenic (+254/+28) | insL1/entD | IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex | |||||
| * | ? | NC_000913 | = 3877664 | NA (NA) | 3 (0.080) | 3/270 | 5.9 | NA | noncoding (80/98 nt) | RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | = 3877675 | NA (NA) | noncoding (91/98 nt) | RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP280 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913 | = 313275 | 46 (1.130) | 3 (0.080) | 3/272 | 5.9 | 6.5% | intergenic (‑33/+441) | ykgR/ykgP | uncharacterized protein/pseudogene, oxidoreductase family |
| ? | NC_000913 | = 313278 | 42 (1.070) | intergenic (‑36/+438) | ykgR/ykgP | uncharacterized protein/pseudogene, oxidoreductase family | |||||
| * | ? | NC_000913 | 1097372 = | NA (NA) | 3 (0.070) | 3/278 | 6.0 | 9.0% | intergenic (+543/+193) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097531 = | 31 (0.760) | intergenic (+702/+34) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1097172 = | NA (NA) | 3 (0.070) | 3/278 | 6.0 | 12.2% | intergenic (+343/+393) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097188 = | 22 (0.540) | intergenic (+359/+377) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 1097007 = | 36 (0.880) | 3 (0.070) | 3/278 | 6.0 | 8.3% | intergenic (+178/+558) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | 1097534 = | 31 (0.770) | intergenic (+705/+31) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||