| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2775871 = | 36 (0.880) | 3 (0.080) | 3/268 | 5.8 | 7.9% | intergenic (+57/‑46) | ypjI/yfjX | pseudogene, CP4‑57 putative prophage remnant,Phage or Prophage Related/CP4‑57 prophage, putative antirestriction protein |
| ? | NC_000913 | 2775894 = | 36 (0.930) | intergenic (+80/‑23) | ypjI/yfjX | pseudogene, CP4‑57 putative prophage remnant,Phage or Prophage Related/CP4‑57 prophage, putative antirestriction protein | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CGGCCAGAAGCGGATATGCTGTTCATCGGGTACCTGCGTTACGCTCAACTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGATGGCTGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2776018‑2775871‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcgtTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTTGGCACCAT > NC_000913/2775894‑2776035 CGGCCAGAAGCGGATATGCTGTTCATCGGGTACCTGCGTTACGCTCAACTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGATGGCT > 2:56193/1‑143 ccataaggtGATATGGTGTTCATCGGGTACTTGCGTTACGCTCAATTCAATGTCGGATTCTTTAGCGGGTACGAGGACGTACTGGGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGATGGCTGGC < 2:380760/134‑1 CCAGAAGCGGATATGCTGTTCATCGGGTACCTGCGTTACGCTCAACTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAACTAACGCCCGCGGCGCTGGCTGGC > 2:393966/1‑143 CAGAAGCGGATATGCTGTTCATCGGGTACCTGCGTTACGCTCAACTCAAATGCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTGCGTGAATAAAACACGCAAGCGGCGATGGCTGGCG > 1:300273/1‑143 AATAAAAAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAA > 1:106367/1‑102 AATAAAAAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAA < 2:106367/102‑1 AAACGCCAGCGGCGATGGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCGGCct > 1:476397/1‑141 TGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTGGTTGCTTAGTGGTCCGAACTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCCCTCTGGC > 1:662360/1‑143 TTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACCGGTACGCATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTCGGCACCAT > 1:455930/1‑143 TTTTTGATTCACGGAGACATACCCATGACAACACAGACACAGTACGTCCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTTGGCACCAT < 1:35653/143‑1 CGGCCAGAAGCGGATATGCTGTTCATCGGGTACCTGCGTTACGCTCAACTCAAATTCGGATCCGTTAGCGGGTACGAGGTCGTACTGTGTCTGTGTTGTCATGGGTATGTCTCCGTGAATAAAAAACGCCAGCGGCGATGGCTGGCGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2776018‑2775871‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggcgtTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCGCTTCTGGCCGCAGCACTTTGGCACCAT > NC_000913/2775894‑2776035 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |