New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2775871 =	36 (0.880)	3 (0.080)	3/268	5.8	7.9%	intergenic (+57/‑46)	ypjI/yfjX	pseudogene, CP4‑57 putative prophage remnant,Phage or Prophage Related/CP4‑57 prophage, putative antirestriction protein
	?	NC_000913	2775894 =	36 (0.930)					intergenic (+80/‑23)	ypjI/yfjX	pseudogene, CP4‑57 putative prophage remnant,Phage or Prophage Related/CP4‑57 prophage, putative antirestriction protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCG  >  NC_000913/2775734‑2776008                                                                                                                                          |                                                                                                                                          aaCTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACgcca                                                                                                                                      <  2:293262/143‑1 (MQ=255) aaCTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACgcca                                                                                                                                      <  2:78117/143‑1 (MQ=255)         aCCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATcgc                                                                                                                              <  2:658464/143‑1 (MQ=255)             gACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCt                                                                                                                          >  1:341761/1‑143 (MQ=255)                     tgcacgTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTCCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGtttt                                                                                                                  <  1:74384/138‑1 (MQ=255)                       aaGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCAATCGCCGCTGGCGtttttt                                                                                                                >  2:554369/1‑143 (MQ=255)                             ttAACCGCTATATCCACATGTCAGGCATTCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCAc                                                                                                          <  2:547388/143‑1 (MQ=255)                              tatcctcTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACACTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGtttttacttctgt                                                                                                         <  1:16841/137‑9 (MQ=38)                                 gcGCTATATGCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGgag                                                                                                      <  2:494946/142‑1 (MQ=255)                                  cGCTATATCCACAGGTCAGACATCCGCACCGACACCTTCCCCCGCTGACTCAGAATCATTTACCAGCAACATCTCACCCTCCCAAACGCGCCTTATTACCTAATACACCAGCAATCCCCACTAACGCTTATCATTCAcaccaa                                                                                                     >  1:434678/1‑138 (MQ=255)                                    cTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACCTTTCACCTTCCCAAACGCGCTTTATTCCCTCATACGACCGCCATCGCCGCTGGCGTGATGCAGTCACGGAGTCa                                                                                                   >  1:398687/1‑143 (MQ=255)                                    cTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCACACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACa                                                                                                   >  2:35653/1‑143 (MQ=255)                                          cctccgctcgtgCATCTTCACCGACACCTTCCCCCGCTGCCTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCa                                                                                             <  1:437347/132‑1 (MQ=37)                                              aGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGac                                                                                         <  1:168302/143‑1 (MQ=255)                                                gTCCGGCAGCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGacaa                                                                                       <  1:345855/143‑1 (MQ=255)                                                     gCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTGTTATTCAAGACGACATACCCACGGCAacacag                                                                                  >  1:5725/1‑143 (MQ=38)                                                     gCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTGACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAccacag                                                                                  >  2:682048/1‑143 (MQ=255)                                                            cACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTCTTTATTCACCGAAACATACTCATGACAACACAGACACAGt                                                                           >  1:575592/1‑143 (MQ=255)                                                              cagACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTGCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGATATACCCATGACAACACAGACACAGTAc                                                                         <  1:76074/141‑1 (MQ=255)                                                                    ccgtCCCCCGCTGTCTCCGAGGCATTTACCGGCGACAGGTCGCCTTCCCGAACGCGCTTCATTACCTCGGACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACAGTCCCTTGTCAACACAGACACAGTACGACCTc                                                                   <  1:351666/140‑1 (MQ=21)                                                                                   tCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCCCGGAGACATACCCATGACCACACCGCCCCCGTCCCGCCTCGTTCCCGCttcccgc                                                    >  2:17488/1‑137 (MQ=25)                                                                                    ccGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGAt                                                   <  2:655554/143‑1 (MQ=255)                                                                                           aTTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACCACACAGACACAGTACGACCTCGTACCCCATAGCGGCTCCGaact                                            >  1:378451/1‑141 (MQ=25)                                                                                            tttACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAAttt                                           <  2:460648/143‑1 (MQ=255)                                                                                              tACCAGCAACACTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATttga                                         <  2:613291/143‑1 (MQ=255)                                                                                                   gccgcATTCCACCTTCCCAGACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGCGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATttgagttga                                    <  1:348520/139‑1 (MQ=255)                                                                                                        aTTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTGTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAAGTTGGGTTGAGCGTa                               >  2:85202/1‑143 (MQ=255)                                                                                                           gggggtgcgtgatcgcgCTTTATTACTTCTTACGCCAGCCAGCGCCGCTGGCGTTTTTGATTCACGGAGATATACCCATGACAACACAGACACAGTGCGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACg                            <  1:690614/130‑1 (MQ=255)                                                                                                             aCCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTACCGGACCCGACTTTGAGTTGACCGTAACGCa                          >  2:348440/1‑143 (MQ=255)                                                                                                              ccTGCCCGAACGCGCGTTATTGCCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAg                         <  2:169884/143‑1 (MQ=255)                                                                                                               cTTCCCACACGCGCTTGATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTGATTCACGGAGCCATACCCATGACCACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAgg                        <  2:281972/143‑1 (MQ=25)                                                                                                               cTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGAt                                                   >  1:57179/1‑116 (MQ=255)                                                                                                               cTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGAt                                                   <  2:57179/116‑1 (MQ=255)                                                                                                                       gcgcgcgTTCTTTCCTCATACGCCAGCCATCGCCGCTGGCGCTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGAt                <  1:485946/142‑1 (MQ=255)                                                                                                                            cTTTATTCCCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACa           <  2:575592/143‑1 (MQ=255)                                                                                                                                     cTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCg  >  2:224904/1‑143 (MQ=255)                                                                                                                                          |                                                                                                                                          AACTTTGAACCGGACGCCGGTGAAGGTTTTAACCGCTATATCCACAGGTCAGGCATCCGCACCGACACCTTCCCCCGCTGACTCCGAATCATTTACCAGCAACATTTCACCTTCCCAAACGCGCTTTATTACCTCATACGCCAGCCATCGCCGCTGGCGTTTTTTATTCACGGAGACATACCCATGACAACACAGACACAGTACGACCTCGTACCCGCTAACGGATCCGAATTTGAGTTGAGCGTAACGCAGGTACCCGATGAACAGCATATCCG  >  NC_000913/2775734‑2776008

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.