New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 609415	39 (0.950)	3 (0.080)	3/268	5.8	7.6%	intergenic (+238/+44)	insL1/entD	IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex
	?	NC_000913	= 609431	36 (0.930)					intergenic (+254/+28)	insL1/entD	IS186 transposase/phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTGCACAGCAAACATCTCATTCTCACGATGAATGATGACCTGCTGTTTATT  >  NC_000913/609274‑609557                                                                                                                                              |                                                                                                                                               cgcgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTGTTCAGATGGTTCAAACCTTGAGTTAGGGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTACGGCACCTGCTTTACACTTTCGCCCGt                                                                                                                                               >  2:124286/1‑143 (MQ=25) cgcgAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCAACGCCATGACGCTCTCGCCCGt                                                                                                                                               >  1:339460/1‑143 (MQ=18)             tCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCGCTTGCTTTGCACTTTCGCCCGTGGTctgcgctgt                                                                                                                                   >  2:619915/1‑135 (MQ=25)               ttAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGCTGGCt                                                                                                                                 >  1:631160/1‑143 (MQ=255)                  aCGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCg                                                                                                                              >  1:295614/1‑143 (MQ=255)                       gCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGa                                                                                                                         >  1:92645/1‑143 (MQ=255)                            gAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGt                                                                                                                    >  1:292093/1‑143 (MQ=255)                             aGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTa                                                                                                                   <  2:376641/143‑1 (MQ=255)                               gtgTCGTATTCTTCAGATGGTGCCGCCCGTAAGTGAGCGCGCATGGGAGTAAGCCGGGCATATCCGGTTGTCAGGTTAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTAcc                                                                                                                 <  2:238924/141‑1 (MQ=255)                                   cgtagtcttcACGTGGTGCGACCCTCAAGTGCGCGGTTCAGGGAGTAGTCACCGCCTATCCGGGTGTCAGGTCAGGATGGTAAGGCCCCTGCTTTACGCTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGAt                                                                                                             <  2:688858/138‑1 (MQ=255)                                   cGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAACCCCCGCATATCCGGTTGTCAGGTCAGGATGGCAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGAt                                                                                                             <  2:237318/143‑1 (MQ=255)                                      aTTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGAtgtt                                                                                                          >  2:161469/1‑143 (MQ=255)                                         cttcAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCAGTGGTCAGTGATGGCTGCGGGCGAATCGTACCGGAggttggc                                                                                                       >  1:493791/1‑141 (MQ=255)                                              gATGGTTCAAGCCTTGAGGTAGCGATTATGGGAGTAGTCCCCGCATGTCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTa                                                                                                  <  1:656740/143‑1 (MQ=255)                                               aTGGTTCAACCCTTAAGTTAGCGCTTATGGAAGTAATCACCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGAGGGCTGCGGGCGAATCGTACCAGATGTTGTCAAttca                                                                                                 >  1:8712/1‑141 (MQ=255)                                                   ttCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCgt                                                                                             >  2:317794/1‑143 (MQ=255)                                                         ccTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGCCAATTAAACGTGTTGGc                                                                                       >  1:598625/1‑143 (MQ=255)                                                          cTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTGAATTAATCGTGTTGGca                                                                                      >  1:653900/1‑143 (MQ=255)                                                           ttAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGcac                                                                                     >  2:507378/1‑143 (MQ=255)                                                                            ggAGTAATCACCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGGGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTAGGAGTAtcat                                                                    >  1:687079/1‑141 (MQ=255)                                                                                tAATCCCCGCATACCCGGTCGTCGGGTCAGGATGGTAAGACACCCACTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTAtcttttct                                                                <  2:59511/143‑1 (MQ=255)                                                                                 aaTCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTGTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTAccttttcct                                                               <  1:124286/143‑3 (MQ=255)                                                                                  aTCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTAtcttttcttt                                                              <  2:292093/143‑1 (MQ=255)                                                                                   tCCCCGCATATCCGGTTGCCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATcttttctttt                                                             <  2:295614/143‑1 (MQ=255)                                                                                      ccGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGCTGTTGTCAATTAATCGTGTTGGCACAGCGTTATGCCTATCTTTTCTTTTATc                                                          >  2:696101/1‑143 (MQ=255)                                                                                              ccGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTg                                                  <  2:92645/143‑1 (MQ=255)                                                                                                ggatGTCAGGTCAGGAGGGTAAGGCACCTGCGTTACACTTTCGCCCGGGGTAAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCAGAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTGca                                                <  2:208384/140‑1 (MQ=255)                                                                                                ggTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTACTCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGACAGTGca                                                >  2:32416/1‑143 (MQ=255)                                                                                                         gtcaggATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCACTGCACAGCAAACa                                       >  1:205052/1‑143 (MQ=255)                                                                                                              gATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTGCACAGCAAACATCTCa                                  <  2:690082/143‑1 (MQ=255)                                                                                                                       tcatcTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTGCACAGCAAACATCTCATTCTCACGa                         <  2:631160/139‑1 (MQ=255)                                                                                                                       gCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTGCACACCAAAGATCTCATTCTCGCGa                         >  2:460191/1‑143 (MQ=255)                                                                                                                           cTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACCGCGTTATGACTATCTTTTCTTTTATCTGCCAGTTCCCCGCAAACATCTCATTAACACGatgaa                     >  2:39786/1‑143 (MQ=255)                                                                                                                            tGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGAGAATCGTACCAGATGTTGTCAATGAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTGCAAAGCAAACATAGCAATCTCACGatgaat                    >  1:218422/1‑143 (MQ=255)                                                                                                                                    acTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGCATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATAACTATCTATTCTTTTATCTGCCAGTGCACACCAAACATCTCATTCTCACTATGCATGATGACct            >  2:598359/1‑143 (MQ=255)                                                                                                                                      tttCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGGTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTGCACAGCAAACATCTCATTCTAACGATGAATGATGACctgc          >  2:90717/1‑143 (MQ=255)                                                                                                                                       ttCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTGCACAGCAAACATCTCATTCTCACGATGAATGATGACctgct         >  2:355391/1‑143 (MQ=255)                                                                                                                                            ccGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTGCACAGCAAACATCTCATTCTCACGATGGATGATGACCTGCTGTTTa    >  1:570434/1‑143 (MQ=255)                                                                                                                                              gTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTGCACAGCAAACATCTCATTCTCACGATGAATGATGACCTGCTGTTTAtt  >  2:468193/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                               CGCGAGGCATCGTCTTAACGAGGCACCGAGGCGTCGCATTCTTCAGATGGTTCAACCCTTAAGTTAGCGCTTATGGGAGTAATCCCCGCATATCCGGTTGTCAGGTCAGGATGGTAAGGCACCTGCTTTACACTTTCGCCCGTGGTCAGTGATGGCTGCGGGCGAATCGTACCAGATGTTGTCAATTAATCGTGTTGGCACAGCGTTATGACTATCTTTTCTTTTATCTGCCAGTGCACAGCAAACATCTCATTCTCACGATGAATGATGACCTGCTGTTTATT  >  NC_000913/609274‑609557

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.