New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 313275	46 (1.130)	3 (0.080)	3/272	5.9	6.5%	intergenic (‑33/+441)	ykgR/ykgP	uncharacterized protein/pseudogene, oxidoreductase family
	?	NC_000913	= 313278	42 (1.070)					intergenic (‑36/+438)	ykgR/ykgP	uncharacterized protein/pseudogene, oxidoreductase family
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGTTATTAATAGAAATGGAGAAATAAATAGGCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGAAGTCAGTTCCGGGAATGAG  >  NC_000913/313136‑313420                                                                                                                                                |                                                                                                                                               ccttattaAGAGAACGGGAGACATAAATAGGCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTTCTGTACGTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGt                                                                                                                                                <  2:205405/141‑1 (MQ=255) cGTTATTAATAGAAATGGCGAAACAACTAGGCGTATTCTACAACTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTTCTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGt                                                                                                                                                <  2:202797/143‑1 (MQ=255)   ttattaATAGAAATGGAGAAATAAATAGGCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTaa                                                                                                                                              <  1:445889/143‑1 (MQ=255)      ttaATAGAAATGGAGAAATAAATAGGCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTg                                                                                                                                           >  2:208587/1‑143 (MQ=255)             aaaTGGAGAAATAAATAGGCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTtat                                                                                                                                    >  1:149732/1‑143 (MQ=255)                tGGAGTATTAAATATGCGTATTTTACAATTGCGACTAATACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTGTATTCTCCTATCATTGTTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTtatat                                                                                                                                  <  1:700287/143‑1 (MQ=255)                 ggAGAAATAAATAGGCGTATTCTACCATTAAGACAGAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATataa                                                                                                                                >  2:682443/1‑143 (MQ=255)                  gagaAATAAATAGGCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATataaa                                                                                                                               <  2:137256/143‑1 (MQ=255)                             aGGCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTAGTTTTTTCT‑CGTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTg                                                                                                                    >  2:450151/1‑143 (MQ=255)                               gCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGt                                                                                                                  >  1:35681/1‑143 (MQ=255)                                   aTTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAAc                                                                                                              <  2:432178/143‑1 (MQ=255)                                          aaTTGCGACAAAAACAACGATATTAATCAGTTTATGGCTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAAtttt                                                                                                       >  2:399400/1‑143 (MQ=255)                                             tGCGACAAAAACAACGATATTAATCAGTTTATGACTGATCTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTg                                                                                                    <  1:282735/143‑1 (MQ=255)                                              gctgcAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAGCGAGTTTGGTCAACCAATTTTTTGa                                                                                                   <  1:704897/139‑1 (MQ=255)                                              gCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGGTTGGTCAACCAATTTTTTgg                                                                                                   >  2:273317/1‑142 (MQ=255)                                               cGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGAc                                                                                                  <  2:44844/143‑1 (MQ=255)                                                gACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACa                                                                                                 <  2:149732/143‑1 (MQ=255)                                                 aCAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCCCTTCGTAAGTGCCCTTATATAAATAACGGGGTTGGTCAACCAATTTGTTGAcgt                                                                                                >  1:619370/1‑141 (MQ=255)                                                  cAAAAACAACGATATTAATCAGTTTATGACTGATTTGATCTACTATATTTT‑CAATCCTTCGTACTTCCTCGCTTTCATTAAGAGTGCGCTTCGTTCCACCGTCTATTTAAATAGTGGGTTTGGTCACCTGATTTTTTGTCATg                                                                                               >  1:283260/1‑143 (MQ=255)                                                              tatTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACAAATTTTTTGACATGTATCACAAAttt                                                                                   <  1:161859/143‑1 (MQ=255)                                                              gactAAGCAGTTTATGACTGATTTGCTGTACTTTAGTTT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAAttt                                                                                   <  1:346343/140‑1 (MQ=255)                                                                ttAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGa                                                                                 <  1:271660/143‑1 (MQ=255)                                                                                   tttGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAAc                                                              <  2:523364/143‑1 (MQ=255)                                                                                   tttGCTGTACTGTATTCT‑CTCGCATTAGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATCTCGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAAc                                                              <  2:526391/143‑1 (MQ=255)                                                                                      gCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATCAAAAACGAGTTTGGTCAACCAAGCTTTTGACATGTAGCACAAATTTGAATAGATGTATTACATCAACTAt                                                           >  2:27031/1‑143 (MQ=255)                                                                                       cTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATc                                                          <  2:452678/143‑1 (MQ=255)                                                                                       cTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATc                                                          <  2:184032/143‑1 (MQ=255)                                                                                        tGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCt                                                         <  1:208587/143‑1 (MQ=255)                                                                                         gTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACGTGTATCACCAATTTGAATAGATGTATTACATCAACTATCtt                                                        >  2:347857/1‑143 (MQ=255)                                                                                          tACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTCCCCTTATATAAATAACGAGTTTGGGCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCttt                                                       >  1:354190/1‑143 (MQ=255)                                                                                             tttATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTAt                                                    <  1:148836/143‑1 (MQ=255)                                                                                                   ct‑ctTTCATTGGTACTTCCTCGCTTTAAAACAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAGCCAATTTTTTGACATGTATCACAACTTTGCATAGATGTATTACATCCACTATCTTTTCTTGTAcc                                              >  1:70112/1‑143 (MQ=255)                                                                                                             tGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCAtt                                     <  2:537020/143‑1 (MQ=255)                                                                                                                   ttCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGatcta                               >  1:300838/1‑143 (MQ=255)                                                                                                                      cTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTCATTGCACCAACGTCATTGATATATGt                            <  1:682443/143‑1 (MQ=255)                                                                                                                              aaaaaaGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCCACGTCATTGATATATGTCGCTTGaa                    >  2:144165/1‑143 (MQ=255)                                                                                                                              aaaaaaGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGaa                    <  2:143921/143‑1 (MQ=255)                                                                                                                              aaaaaaGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGaa                    <  1:490675/143‑1 (MQ=255)                                                                                                                                aaaaGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGAAGt                  >  1:156169/1‑143 (MQ=255)                                                                                                                                 aaaGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGAAGTc                 <  2:541252/143‑1 (MQ=255)                                                                                                                                 aaaGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGAAATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGAAGTc                 <  1:705652/143‑1 (MQ=255)                                                                                                                                  aaGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTGTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGAGATATGTCGCCTGGAGtta                >  2:29770/1‑141 (MQ=255)                                                                                                                                       tgaaCTGCGTACGGGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGAAGTCAGTTcc           <  1:712919/140‑1 (MQ=255)                                                                                                                                         cACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGAAGTCAGTTCCgg         >  2:205327/1‑143 (MQ=255)                                                                                                                                           cTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGAAGTCAGTTCCGGGa       <  1:675498/143‑1 (MQ=255)                                                                                                                                                tAAGTGCCCTTATATCAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGAAGTCAGTTCCGGGAATGAg  <  2:70112/143‑1 (MQ=255)                                                                                                                                                |                                                                                                                                               CGTTATTAATAGAAATGGAGAAATAAATAGGCGTATTCTACAATTGCGACAAAAACAACGATATTAATCAGTTTATGACTGATTTGCTGTACTTTATTCT‑CTTTCATTGGTACTTCCTCGCTTTAAAAAAGAGTGCACTTCGTAAGTGCCCTTATATAAATAACGAGTTTGGTCAACCAATTTTTTGACATGTATCACAAATTTGAATAGATGTATTACATCAACTATCTTTTATTGCACCAACGTCATTGATATATGTCGCCTGAAGTCAGTTCCGGGAATGAG  >  NC_000913/313136‑313420

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.