| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3683801 = | 30 (0.730) | 5 (0.130) | 5/272 | 4.8 | 15.2% | coding (1817/1989 nt) | yhjK | cyclic‑di‑GMP phosphodiesterase |
| ? | NC_000913 | 3683817 = | 27 (0.690) | coding (1801/1989 nt) | yhjK | cyclic‑di‑GMP phosphodiesterase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GGAGTTCGGGTGGCGCTGGATGATTTCGGCATGGGCTACGCAGGGCTGCGTCAGCTGCAGCATATGAAATCGTTGCCAATCGACGTACTGAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAGCATGATTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3683946‑3683801‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgcTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTCGATTGGCAACGATTTCATATGCTGCAGCTGACGCAGCCCTGCGTAGCCCATGCCGAAATCATCCAGCGCCACCCGAACTCCGGCATTG > NC_000913/3683817‑3683953 GGAGTTCGGGTGGCGCTGGATGATTTCGGCATGGGCTACGCAGGGCTGCGTCAGCTGCAGCATATGAAATCGTTGCCAATCGACGTACTGAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAGCATGATTGC < 1:607896/143‑1 GTTCGGGTGGCGGGGGATGATTTCGGCAGGGGCTACGCAGGGCTGCGTCAGCTGCAGCATAGGAAATCGTTGCCAATCGACGTACTGAAAATCGACAAAATGTGTGTGGAAGGCTTGCCGGGAGATAGCAGCATGATTGCTGC < 2:33198/143‑1 AAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAGCATGATTGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTCGATTGGCAACGATTTCATATGCTGCAGCTGACGCAGCCCTGCGTAGC > 1:620942/1‑143 GTTGAAGGCTTGCCGGGAGATAGCAGCATGATTGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTCGATTGGCAACGATTTCATATGCTGCAGCTGACGCAGCCCTGCGTAGCCCATGCCGA < 2:620942/143‑1 GGAGATAGCAGCATGATTGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTGGACGATTTTCAGTACGTCGATTGGCAACGATTACAAATGCTGAAGCTGACGCAGACCTGCGTAGCCCAGGCCGAACTCATCCAACGCga > 2:663098/1‑141 ATAGCAGCATGATTGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTCGATTGGCAACGATTTCATATGCTGCAGCTGACGCCGCCCTGCGTAGCCCATCCCGAAATCATCCAGCGCCACCCG > 1:608744/1‑143 TAGCAGCATGATTGCTGCTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTCGATTGGCAACGATTTCATATGCTGCAGCTGACGCAGCCCTGCCTAGCCCATGCCGAACTCATCCAGCGCCCCCCGc > 2:702617/1‑142 TGCTGCTTTCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTTGGTGCGCCCACCGCCAACGATTTCATATGCTGCAGCTGACGCAGCCCTGCGTAGCCCATGCCGAAATCATCCAGCGCCACCCGAACTCCGGCATTG < 2:710876/143‑1 GGAGTTCGGGTGGCGCTGGATGATTTCGGCATGGGCTACGCAGGGCTGCGTCAGCTGCAGCATATGAAATCGTTGCCAATCGACGTACTGAAAATCGACAAAATGTTTGTTGAAGGCTTGCCGGGAGATAGCAGCATGATTGCTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3683946‑3683801‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgcTATCTCCCGGCAAGCCTTCAACAAACATTTTGTCGATTTTCAGTACGTCGATTGGCAACGATTTCATATGCTGCAGCTGACGCAGCCCTGCGTAGCCCATGCCGAAATCATCCAGCGCCACCCGAACTCCGGCATTG > NC_000913/3683817‑3683953 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |