mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.32.0 revision 6ff6de7d1b87
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,304,872 | 0 | T | G | 53.8% | 7.5 / 14.0 | 13 | intergenic (+481/+234) | eco/mqo | ecotin, a serine protease inhibitor/malate dehydrogenase, FAD/NAD(P)‑binding domain |
| Marginal new junction evidence (lowest skew 10 of 11 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 303629 | 49 (1.170) | 4 (0.110) | 4/256 | 5.3 | 8.3% | intergenic (+24/+224) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein |
| ? | NC_000913 | = 303636 | 44 (1.160) | intergenic (+31/+217) | yagU/ykgJ | DUF1440 family inner membrane acid resistance protein/UPF0153 cysteine cluster protein | |||||
| * | ? | NC_000913 | 2560166 = | 58 (1.380) | 4 (0.100) | 4/270 | 5.5 | 6.7% | intergenic (+102/‑89) | intZ/yffL | CPZ‑55 prophage, putative phage integrase/CPZ‑55 prophage, uncharacterized protein |
| ? | NC_000913 | 2560182 = | 55 (1.370) | intergenic (+118/‑73) | intZ/yffL | CPZ‑55 prophage, putative phage integrase/CPZ‑55 prophage, uncharacterized protein | |||||
| * | ? | NC_000913 | = 1925388 | 54 (1.290) | 3 (0.080) | 3/260 | 5.9 | 5.7% | intergenic (+50/‑52) | holE/yobB | DNA polymerase III, theta subunit/C‑N hydrolase family protein |
| ? | NC_000913 | = 1925402 | 50 (1.290) | intergenic (+64/‑38) | holE/yobB | DNA polymerase III, theta subunit/C‑N hydrolase family protein | |||||
| * | ? | NC_000913 | = 4115652 | 42 (1.000) | 3 (0.080) | 3/266 | 6.1 | 7.0% | intergenic (‑74/+61) | glpX/glpK | fructose 1,6‑bisphosphatase II/glycerol kinase |
| ? | NC_000913 | = 4115656 | NA (NA) | intergenic (‑78/+57) | glpX/glpK | fructose 1,6‑bisphosphatase II/glycerol kinase | |||||
| * | ? | NC_000913 | 1179565 = | 47 (1.120) | 3 (0.070) | 3/270 | 6.1 | 6.6% | intergenic (+61/‑66) | nagK/cobB | N‑acetyl‑D‑glucosamine kinase/deacetylase of acs and cheY, chemotaxis regulator |
| ? | NC_000913 | 1179588 = | 40 (1.000) | intergenic (+84/‑43) | nagK/cobB | N‑acetyl‑D‑glucosamine kinase/deacetylase of acs and cheY, chemotaxis regulator | |||||
| * | ? | NC_000913 | = 848167 | 40 (0.950) | 3 (0.070) | 3/270 | 6.1 | 7.1% | intergenic (‑163/+241) | glnH/dps | glutamine transporter subunit/Fe‑binding and storage protein, stress‑inducible DNA‑binding protein |
| ? | NC_000913 | = 848170 | 40 (1.000) | intergenic (‑166/+238) | glnH/dps | glutamine transporter subunit/Fe‑binding and storage protein, stress‑inducible DNA‑binding protein | |||||
| * | ? | NC_000913 | = 354697 | 45 (1.070) | 3 (0.080) | 3/268 | 6.1 | 6.6% | noncoding (99/171 nt) | REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences |
| ? | NC_000913 | = 354713 | 42 (1.050) | noncoding (115/171 nt) | REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences | REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences | |||||
| * | ? | NC_000913 | 4584202 = | 28 (0.670) | 3 (0.070) | 3/272 | 6.2 | 9.4% | coding (2561/3513 nt) | hsdR | endonuclease R Type I restriction enzyme |
| ? | NC_000913 | 4584216 = | 31 (0.770) | coding (2547/3513 nt) | hsdR | endonuclease R Type I restriction enzyme | |||||
| * | ? | NC_000913 | = 1726509 | 28 (0.670) | 3 (0.070) | 3/272 | 6.2 | 9.7% | coding (487/600 nt) | nemR | transcriptional repressor for the nemRA‑gloA operon, quinone‑, glyoxal‑, and HOCl‑activated |
| ? | NC_000913 | = 1726514 | 29 (0.720) | coding (492/600 nt) | nemR | transcriptional repressor for the nemRA‑gloA operon, quinone‑, glyoxal‑, and HOCl‑activated | |||||
| * | ? | NC_000913 | 1237780 = | 37 (0.880) | 3 (0.070) | 3/274 | 6.2 | 7.4% | coding (210/1299 nt) | dadA | D‑amino acid dehydrogenase |
| ? | NC_000913 | 1237791 = | 39 (0.960) | coding (221/1299 nt) | dadA | D‑amino acid dehydrogenase | |||||