New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1237780 =	37 (0.880)	3 (0.070)	3/274	6.2	7.4%	coding (210/1299 nt)	dadA	D‑amino acid dehydrogenase
	?	NC_000913	1237791 =	39 (0.960)					coding (221/1299 nt)	dadA	D‑amino acid dehydrogenase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCGTCATTGATCGGGAGCCGGGGGCCGCCCTGGAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGA  >  NC_000913/1237650‑1237928                                                                                                                                              |                                                                                                                                          gcgagatgcctgtggAGCGGGGGGCCGCCCTGGAAGCCAGTGCCGCGAGTGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGcgccg                                                                                                                                          <  1:172522/130‑1 (MQ=255)    tCATTGATCGGGAGCCGGGGGCCGCCCTGGAAACCAGGGCCGCGAATGCGGGGCAAATCTCCCCCGGAAAAGCTGCACCGTGGGCGGCACCAGGCGTGCCTTTAAAAGCGATCAGATGGACGGTCCAGCGCCACGcgccgcgg                                                                                                                                       >  1:18582/1‑141 (MQ=255)       ttGATCGGGAGCCGGGGGCCGCCCTGGAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCg                                                                                                                                    <  2:48403/143‑1 (MQ=255)         gATCGGGAGCCGGGGGCCGCCCTGGAAACCAGTGCCGCGAATGCCGGGCAGATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGCTTAAATGGATGTTCCAGCGCCATGCGCAGCcggcggc                                                                                                                                  >  1:734827/1‑142 (MQ=255)          aTCGGGAGCCGGGGGCGGCCCTGGAAACCAGTGCCGCGAATGCCGGGCAAATCGCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGtt                                                                                                                                 <  2:554064/143‑1 (MQ=255)           tCGGGAGCCGGGGGCCGCCCTGGAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCGTTTCAAAGCGATTAACTGGATGTTCCAGCGCCATGCGCCGGTGGCGGTTc                                                                                                                                >  1:497889/1‑143 (MQ=255)             gggAGCCGGGGGCCGCCCTGGAAACCAGCGCCGCGAATGCCGGGCAAATCGCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGt                                                                                                                              <  2:142534/143‑1 (MQ=255)               gAGCCGGGGGCCGCCCTGGAAACCAGGGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGtct                                                                                                                            <  1:283112/143‑1 (MQ=255)                   cGGGGGCCGCCCTGGAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGCGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGCTGTTCCAGCGCCATGCGCCGCCGGCGGTTCGTCTCGAc                                                                                                                        >  1:575502/1‑143 (MQ=255)                            cccTGGAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACggct                                                                                                               >  2:129269/1‑140 (MQ=255)                            cccTGGAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCGCGACGGGACGCAg                                                                                                               >  2:345243/1‑143 (MQ=255)                             ccTGGAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGt                                                                                                              <  2:633139/143‑1 (MQ=255)                               tGGAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATCAAATGGAAGTTCCAGCGCAATGCGCGGCGGGCGGTTCGTCTCGACGGGACGCAGTTc                                                                                                            >  1:271632/1‑143 (MQ=255)                                ggAGACGAGTGGGGCGAGGGCGGGGCAAAGGGCCCGCGGGTAGGCTGCACGGTGGGCGGCACCAGGGGTGCCTTTGAAAGGGATTGAGTGGATGTTGCAGCGCCGTGCGCGGCTGGCGGTTCGTCTCGACGGTACGCAGTTcc                                                                                                           <  1:375605/143‑1 (MQ=255)                                 gAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCa                                                                                                          <  2:219933/143‑1 (MQ=255)                                   aaCCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCCCCAGGTGTGCCGTTACAAGCGATTAAATGGATGTTCCAGCGCCAGGCGCCGCTGGCGGTTCGCCGCGACGGTACGCAGTTCCAGt                                                                                                        >  1:462837/1‑143 (MQ=255)                                     ccAGTGCCGCGACTGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTg                                                                                                      <  2:117536/143‑1 (MQ=255)                                           ccGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCAATGCGTAGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAgcggaacggg                                                                                                >  1:631689/1‑134 (MQ=255)                                                     cGGGCAAATCTGCCGCGGGTGTGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCaaa                                                                                      <  1:4126/143‑1 (MQ=255)                                                     cGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTACATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGCCGGTACGCAGTTCCCGTTGAAATGGATGTGGCaaa                                                                                      >  2:513357/1‑143 (MQ=255)                                                       ggCAAATCTCCACCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATg                                                                                    <  2:68986/143‑1 (MQ=255)                                                           actccccccgGGTTGTGCTGCACCGTGGGCGGTGCCAGGTGTGCCTTTCGATGCGATTATGTGCGTGTTTCAGCTCCATGGGCCGCTTGCGGTTCGTCTCCACGGTACTCAGTTCCAGTTTAAATGGATGTGGCAAATGTTAc                                                                                <  1:62703/138‑1 (MQ=255)                                                            aTCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACg                                                                               <  2:535792/143‑1 (MQ=255)                                                               tcCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTCCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAACGGTACGCaa                                                                            >  1:233765/1‑143 (MQ=255)                                                                   ccGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGc                                                                        >  2:92038/1‑143 (MQ=255)                                                                                 ccGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGCTGTGGCAAATGTTACGTAACTGCGACACCAGCCACTa                                                          >  2:131889/1‑143 (MQ=255)                                                                                   gggggCGGCACCAGGGGTGGCTTTAAAAGCGATTAAGTGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACa                                                        <  1:181180/141‑1 (MQ=255)                                                                                        cggcACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAACGTTACGTAACTGCGACACCAGCCACTACATGGaa                                                   <  2:28128/143‑1 (MQ=255)                                                                                            aCCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACa                                               >  2:176716/1‑143 (MQ=255)                                                                                                        tttAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCCGCCACTACATGGAAAACAAAGGGCGGATgg                                   >  2:346509/1‑143 (MQ=255)                                                                                                                cGATTAAATGTATGCTCCAGCTCCATGCGCCGCTGGCTGTTCGTCTCGACGTTACGCAGTTCCAGTTGAAATGGATGTGGCTAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTg                           <  2:195269/143‑1 (MQ=255)                                                                                                                   ttAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAACGGCGGATGGTGCGTCTGGCg                        >  1:563900/1‑143 (MQ=255)                                                                                                                     aaaTGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGa                      <  2:525742/143‑1 (MQ=255)                                                                                                                      gacggATGCTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGaa                     <  2:678152/140‑1 (MQ=255)                                                                                                                          gATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACa                 <  2:183741/143‑1 (MQ=255)                                                                                                                           ctGTTCCAGCGCCACGCGCCGCTGGCGGTTGGCGTCGACGGTACGCAGTGCCGGTTGAAATGGATGTGGCAAATGGCACGTAGCTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAg                <  1:439770/142‑1 (MQ=255)                                                                                                                                 cAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACGGCCGTGa          >  2:707530/1‑143 (MQ=255)                                                                                                                                      tcATGCGGCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAACCAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGcc     <  1:106540/142‑1 (MQ=255)                                                                                                                                         tGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGGTGAACTGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTCGCGGAATACAGCCGTGATTGCCTGa  >  1:482164/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                          CCGTCATTGATCGGGAGCCGGGGGCCGCCCTGGAAACCAGTGCCGCGAATGCCGGGCAAATCTCCCCCGGATATGCTGCACCGTGGGCGGCACCAGGTGTGCCTTTAAAAGCGATTAAATGGATGTTCCAGCGCCATGCGCCGCTGGCGGTTCGTCTCGACGGTACGCAGTTCCAGTTGAAATGGATGTGGCAAATGTTACGTAACTGCGACACCAGCCACTACATGGAAAACAAAGGGCGGATGGTGCGTCTGGCGGAATACAGCCGTGATTGCCTGA  >  NC_000913/1237650‑1237928

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.