New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1925388	54 (1.290)	3 (0.080)	3/260	5.9	5.7%	intergenic (+50/‑52)	holE/yobB	DNA polymerase III, theta subunit/C‑N hydrolase family protein
	?	NC_000913	= 1925402	50 (1.290)					intergenic (+64/‑38)	holE/yobB	DNA polymerase III, theta subunit/C‑N hydrolase family protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTTCGCGAGCGGCTTATTGCCCACCGTTTGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGAGTTTGTGAGGGCCGCCGCCAGGCA  >  NC_000913/1925261‑1925543                                                                                                                                              |                                                                                                                                              tttCGCGAGCGGCTTATTGCCCACCGTTTGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCa                                                                                                                                              <  1:466807/143‑1 (MQ=255)        cgCGGCTTATTGCCCACCGTTTGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATaa                                                                                                                                       <  2:492352/142‑1 (MQ=255)            gCTCATTGCCCACCGTTTGGCTGCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTg                                                                                                                                   <  1:229022/143‑1 (MQ=255)              ttATTGCCCACCGTTGGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCa                                                                                                                                 <  1:82091/143‑1 (MQ=255)              gtATTTCCCACCGTTTGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCa                                                                                                                                 <  1:651246/142‑1 (MQ=255)              gtATTGCCCGCCGTTTGTGTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCa                                                                                                                                 <  1:79678/142‑1 (MQ=255)               tATTGCCCACCGTTTGGCTTCGGTCAATCTGTCACGTTTACCTTCCGAGCCCAAACTTACATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATACttcctag                                                                                                                                >  1:53533/1‑138 (MQ=255)                     ccACCGTTTGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGCATTTTCTAAACGTCATTCATAATTGGCAGCCAttt                                                                                                                          >  2:707551/1‑143 (MQ=255)                        ccGTTTGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGa                                                                                                                       <  1:538124/143‑1 (MQ=255)                           tttGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGaaaa                                                                                                                    <  2:528251/143‑1 (MQ=255)                           tttGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGaaaa                                                                                                                    >  2:241265/1‑143 (MQ=255)                               gCTTCTGTCAATCTTTCACTTTTACCTTACGAGTACCAGCTTAGATAGAACTGATACAGAGTTACACTTTATTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGaa                                                                                                                <  1:252104/143‑1 (MQ=255)                                 ttCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGt                                                                                                              >  2:208827/1‑143 (MQ=255)                                 ttCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTACCAGTAATGAGGAAAAgcacgt                                                                                                              >  1:250835/1‑138 (MQ=255)                                    ggTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGCAGCCAt                                                                                                           >  2:183064/1‑143 (MQ=255)                                      tCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTa                                                                                                         <  2:235084/143‑1 (MQ=255)                                      tCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTa                                                                                                         <  2:109094/143‑1 (MQ=255)                                             gTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAACTCATCAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGtt                                                                                                  <  2:572050/143‑1 (MQ=255)                                               cACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCt                                                                                                <  2:358435/143‑1 (MQ=255)                                                aCGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCGTACATAACGCCTGCTAAATTATGAGTAGTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTg                                                                                               <  1:332796/143‑1 (MQ=255)                                                    ttACCTTACGAGTCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGaaa                                                                                           <  1:453213/143‑1 (MQ=255)                                                     tACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAg                                                                                          <  1:310556/143‑1 (MQ=255)                                                                    aaCTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAat                                                                           <  2:661906/143‑1 (MQ=255)                                                                    aaCTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAat                                                                           <  2:160835/143‑1 (MQ=255)                                                                        taaataaaACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGa                                                                       <  1:337807/143‑1 (MQ=255)                                                                          aatcaaACTTAGACAGAGTTACTCTTTCTTACATACCGCCTGCTAAATTATGAGTATGTTCTAAACCGCACTCGTAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGACAGATGAGc                                                                     <  1:487353/143‑1 (MQ=255)                                                                           ataaaACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTAATAATTTCCAGTCACTTGGAACAGACAGACCGTAGTTCGTTCTGGAAAGTTGCAACCGCGCGATATGAgga                                                                    >  1:11898/1‑141 (MQ=255)                                                                            taaaACTTATACAGAGTTACACCTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCACTCATTTTGAAAAGGAACTCATTATGTCGCTCTGGAAAGTTGCAGCAGCGCAATATGAGccg                                                                   >  1:641745/1‑142 (MQ=255)                                                                             aaaaCTGATACAGAGTTACGCTCACTTACAGAACGCCGGATAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTc                                                                  <  2:455114/143‑1 (MQ=255)                                                                                  ttATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACGGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCGCGTaaa                                                             >  1:662871/1‑143 (MQ=255)                                                                                  ttATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTaaa                                                             <  2:265041/143‑1 (MQ=255)                                                                                  ctataCAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTaaa                                                             <  2:151563/142‑1 (MQ=255)                                                                                    ataCAGGGTTAAACTTTCTTACATAACGGTTGATAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAAc                                                           <  1:276300/143‑1 (MQ=255)                                                                                    ataCAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAAc                                                           <  1:208827/143‑1 (MQ=255)                                                                                        cgagTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACctca                                                       <  2:60542/142‑1 (MQ=255)                                                                                          agTTACACCTCCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAGACCGCACTCATAATTTGCAGTCAGCGTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACctcact                                                     <  2:27667/143‑1 (MQ=255)                                                                                                acTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGATCCTCGTAAAACCTCACTCACCGa                                               >  2:368865/1‑143 (MQ=255)                                                                                                acTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCCCCGa                                               >  1:480714/1‑143 (MQ=255)                                                                                                  tttCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAACACGAAGTCATTATGTCGTCCTGGCAACTTGCATCAGCGCAAAATGATCCCCGTCAAACCTCACTCACCGCAc                                             >  1:251612/1‑143 (MQ=255)                                                                                                  tttCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAAGATGAGCCTCGTAACACctaactaaggcaac                                             >  1:421138/1‑135 (MQ=255)                                                                                                    tCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAg                                           >  2:293820/1‑143 (MQ=255)                                                                                                                     tAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAACGTTGAAGTAGCGCATTATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGa                          >  2:533985/1‑143 (MQ=255)                                                                                                                         ttATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGAGttt                      >  2:434116/1‑143 (MQ=255)                                                                                                                           aTGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGAGTTtgt                    >  2:208348/1‑143 (MQ=255)                                                                                                                               gtttgttctggaCCGCACTCATAATTTGCCGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCGGCGTAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCCTCTGTAGTTTGTGAgg                <  1:446637/132‑1 (MQ=255)                                                                                                                               ggacttgcctggctgCACTCATAATTGGCAGTCATTTTTAAAGGGAAGTCATTATGTCGTGCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGAGTTTGTGAgg                <  1:342736/129‑1 (MQ=255)                                                                                                                                tATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCCTCCGGAGTTCGTGAggg               >  1:63975/1‑143 (MQ=255)                                                                                                                                tATTTTCTAAACCGCACGCATAATTGGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGAGTTTGTGAggg               <  2:347969/143‑1 (MQ=255)                                                                                                                                  ttttCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATCATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGAGTTTGTGAGGgcc             >  2:682872/1‑143 (MQ=255)                                                                                                                                     gcTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGAGTTTGTGAGGgccgcc          <  1:241265/142‑1 (MQ=255)                                                                                                                                       tAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGGAGCTCATCATCTGGAGTTGGTGAGGgcggccgc        >  2:520080/1‑143 (MQ=255)                                                                                                                                           ccGCACTCATAATTTGCAGTCAGTTTGAAAAGGAAGTCATTATGTAGTTCTGGAAAGTTGCGGCAGAGCAATATTAGCCTCGTCAAATCCCACCAACCGAACAGGGAGCGGATCATCTGGAGATTGCTGGGGCCGCCGCCAgg    >  1:494079/1‑143 (MQ=255)                                                                                                                                             gCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGAGTCTGTGAGGGCCGCCGCCAGGca  >  2:519567/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                              TTTCGCGAGCGGCTTATTGCCCACCGTTTGGCTTCGGTCAATCTGTCACGTTTACCTTACGAGCCCAAACTTAAATAAAACTTATACAGAGTTACACTTTCTTACATAACGCCTGCTAAATTATGAGTATTTTCTAAACCGCACTCATAATTTGCAGTCATTTTGAAAAGGAAGTCATTATGTCGTTCTGGAAAGTTGCAGCAGCGCAATATGAGCCTCGTAAAACCTCACTCACCGAACAGGTAGCTCATCATCTGGAGTTTGTGAGGGCCGCCGCCAGGCA  >  NC_000913/1925261‑1925543

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.