New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2560166 =	58 (1.380)	4 (0.100)	4/270	5.5	6.7%	intergenic (+102/‑89)	intZ/yffL	CPZ‑55 prophage, putative phage integrase/CPZ‑55 prophage, uncharacterized protein
	?	NC_000913	2560182 =	55 (1.370)					intergenic (+118/‑73)	intZ/yffL	CPZ‑55 prophage, putative phage integrase/CPZ‑55 prophage, uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAA  >  NC_000913/2560024‑2560306                                                                                                                                               |                                                                                                                                             cAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATGCAATTTg                                                                                                                                              >  2:180527/1‑143 (MQ=255)            gatAACGGCAAACCTCTAGAACCGGAATGAATAATTAAGCGGCTTCTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTc                                                                                                                                   <  2:184395/141‑1 (MQ=255)             gTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGACACCTGTATTCAATTTGCCGGATTCGTcc                                                                                                                                  >  1:20438/1‑143 (MQ=255)                accgCAATCCTCTACAACCGGAAGGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTACCTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGc                                                                                                                               <  2:114082/140‑1 (MQ=255)                   gCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATATTGCATGTTGTATAAGTATTTGTTTTGTATGGTGTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCAGGATTCGTCCGGctgt                                                                                                                            >  2:43682/1‑141 (MQ=255)                      aTCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGcttttct                                                                                                                         >  2:477906/1‑143 (MQ=255)                       tCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAGGGATGTGTTTTGTGTGGTTTAACTATCACCTGAGAAGAAACCTGTATTCAATCTCCCTGCTTCGTCCGGctcttctt                                                                                                                        >  1:346497/1‑143 (MQ=255)                        ccTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGcttttcttt                                                                                                                       <  2:416428/143‑1 (MQ=255)                        actctAGGACCGGATTGGATAATTGAGCGGCTCTTTTGCACAGCGCGATTTTGCATGTTGTATAAGTATTTTTTTTGTGTGGTTTAACTATCACCTGATAAGATACCTGTATTCAAGTTGCCGGATTCGTCCGGcttttcttt                                                                                                                       <  1:47493/142‑1 (MQ=255)                          tctAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCttttt                                                                                                                     <  2:106687/143‑1 (MQ=255)                           caagcaCCGGAATTAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTc                                                                                                                    <  2:100656/138‑1 (MQ=255)                              gAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCt                                                                                                                 >  2:372113/1‑143 (MQ=255)                                 ccGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAat                                                                                                              >  1:607089/1‑143 (MQ=255)                                    gaatgaatAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAattat                                                                                                           >  1:643059/1‑143 (MQ=255)                                     aatgaatAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAattatt                                                                                                          <  2:708250/143‑1 (MQ=255)                                             atTGAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAattattccattatt                                                                                                  <  1:365459/143‑1 (MQ=255)                                                  gCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTACttattgctgtattccact                                                                                             >  1:40616/1‑141 (MQ=255)                                                  gCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAAt                                                                                             >  2:330830/1‑143 (MQ=255)                                                     gCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTaa                                                                                          >  2:190827/1‑143 (MQ=255)                                                      cTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAATTATTTGTTTTGTGTGGTTTCAGAACCACCTGATATGGTACCTTTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTTCTATTAAg                                                                                         >  1:714953/1‑143 (MQ=255)                                                      cTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAGGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCGATTATTCCAATTAAg                                                                                         >  2:84646/1‑143 (MQ=255)                                                        tttttGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTg                                                                                       <  2:563111/143‑1 (MQ=255)                                                        tttttGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTg                                                                                       <  1:279198/143‑1 (MQ=255)                                                         tcttGCAAAGCGCAATGTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTgg                                                                                      <  2:39564/141‑1 (MQ=255)                                                           ttGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGaa                                                                                    <  1:108040/143‑1 (MQ=255)                                                            tGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAAt                                                                                   >  1:613558/1‑143 (MQ=255)                                                              cAAAGCGCAATTTTGCAATTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTAGTCCGGCTATTCTTCTTCGCTAATTATTCTATTATTCAACTAAATTGGAATaa                                                                                 >  1:493569/1‑143 (MQ=255)                                                               aaaGCGCAATTTTGCATTGTGTCTTTGTGTTCGTCCTGTGTGGGTTAACTATCACCGGATAAGAACCCTGTCTCCAATTGGCCGGACTCGTCCGGCTTCTCTTTTGCGCTAATTATTCCATTATTCCACTTAATTGGAATaat                                                                                <  1:6868/143‑2 (MQ=255)                                                                   ctctatgttGCATTGTCTTTAAGTATTCGTTTTGTGTGGTTTAACTACCACCTGATAACAAACCTGTATTCAACTTGCCGGATCCGTCCTGCTTTTCTTTTTCGCTAATTATTCCATTATTCCCATTAAGGGGAATAAattat                                                                            <  1:85777/136‑1 (MQ=255)                                                                     cAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTc                                                                          <  2:483187/143‑1 (MQ=255)                                                                     cAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTc                                                                          <  2:72806/143‑1 (MQ=255)                                                                      aaTTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCa                                                                         >  2:156685/1‑143 (MQ=255)                                                                             cATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCaa                                                                  <  1:420315/143‑1 (MQ=255)                                                                              aTTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAg                                                                 <  1:252681/143‑1 (MQ=255)                                                                               ttttGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGa                                                                >  2:445164/1‑143 (MQ=255)                                                                                tttGCATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGATACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGaa                                                               <  1:68772/143‑1 (MQ=255)                                                                                           aTTTGTTTTGTGTGGTTTAACTATCCCCTGCTAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCAt                                                    <  2:690525/143‑1 (MQ=255)                                                                                               gttttgtGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGttt                                                >  2:431609/1‑143 (MQ=255)                                                                                                ttttgtGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTNTTTCGCTAATTATTCCATTATTCCAATTANGTGGAATAAATTANTCAATATCAAGAACTTAAATCCATGTTTg                                               >  2:73465/1‑143 (MQ=255)                                                                                                        ggTTTAACTATCACCTGATAAGAAACATGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGaaa                                       <  2:427439/143‑1 (MQ=255)                                                                                                         gTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGGCCGGCTTTTATTTTTCGCTAATTGTTCCATTATTCCAATTAAGTGGAATAGATGATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAg                                      >  2:68221/1‑143 (MQ=255)                                                                                                          tttAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAATAACTTAAATCCATGTTTGCAACGcaaaa                                     >  1:447289/1‑141 (MQ=255)                                                                                                          tttAACTATCACCTGATAAGAAACCTGTATCCAATTTGCCGGATTCGTCCGGCATTTCTTTTTCGATAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTGAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGa                                     >  1:273375/1‑143 (MQ=255)                                                                                                            tAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATc                                   <  2:295395/143‑1 (MQ=255)                                                                                                                tATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTTGAATAACTTATTCAATCTCAAGAACTTAAATCCATGTTTGCAACGAAATATCCaga                               >  1:584477/1‑143 (MQ=255)                                                                                                                tATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCaga                               >  2:204634/1‑143 (MQ=255)                                                                                                                 aTCACCTCATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCagag                              <  2:395722/143‑1 (MQ=255)                                                                                                                   cACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGtt                            <  2:145182/143‑1 (MQ=255)                                                                                                                        gATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGaaa                       >  2:325958/1‑143 (MQ=255)                                                                                                                            aGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAACTGGACTAACTTATTCAATATCAATAACTTCAATCCATGTTTGCAACCAAACATCCAGAGTTCGAAAATAg                   >  1:115398/1‑143 (MQ=255)                                                                                                                             gAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAgg                  <  1:448818/143‑1 (MQ=255)                                                                                                                                aCCTGTATCCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATc               <  2:92290/143‑1 (MQ=255)                                                                                                                                  cTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGACAATAGGATCaa             >  2:186577/1‑143 (MQ=255)                                                                                                                                  cTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCaa             >  2:191796/1‑143 (MQ=255)                                                                                                                                  cTGGATTCAATTGGCCGGATTAGTCCGGCTTTTCTTTTTCGCTAACTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCaa             <  2:54296/143‑1 (MQ=255)                                                                                                                                     tATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTAGAAAATAGGATCAacac          >  2:195896/1‑143 (MQ=255)                                                                                                                                       ttCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTTCAACGAAAGATCCAGAGTTCGAAAATAGGATCACCACaa        >  2:619821/1‑143 (MQ=255)                                                                                                                                             ttGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTACTCCAGTATTTCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATaaaa  <  1:516334/143‑1 (MQ=255)                                                                                                                                               |                                                                                                                                             CAATATTGGCAGGTAACGGCAATCCTCTAGAACCGGAATGAATAATTAAGCGGCTTTTTTGCAAAGCGCAATTTTGCATTTTGTATAAGTATTTGTTTTGTGTGGTTTAACTATCACCTGATAAGAAACCTGTATTCAATTTGCCGGATTCGTCCGGCTTTTCTTTTTCGCTAATTATTCCATTATTCCAATTAAGTGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAA  >  NC_000913/2560024‑2560306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.