New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1179565 =	47 (1.120)	3 (0.070)	3/270	6.1	6.6%	intergenic (+61/‑66)	nagK/cobB	N‑acetyl‑D‑glucosamine kinase/deacetylase of acs and cheY, chemotaxis regulator
	?	NC_000913	1179588 =	40 (1.000)					intergenic (+84/‑43)	nagK/cobB	N‑acetyl‑D‑glucosamine kinase/deacetylase of acs and cheY, chemotaxis regulator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GTGTTCCGCGCATTGAACGCGCGCGCCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTCGTACCTTTCGCGCC  >  NC_000913/1179425‑1179705                                                                                                                                             |                                                                                                                                             gtgtTCCGCGCATTGAACGCGCGCGCCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATaaa                                                                                                                                            <  2:577427/143‑1 (MQ=255)    ttCCGCGCATTGAACGCGCGCGCCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAAcgc                                                                                                                                         >  2:485443/1‑143 (MQ=255)    tggcgcgCATTGAGCGCGCGCGCGACGCTGATGCGGGAGCAATGCGTGGCGCGGCCTTGCTACATCTAACCGCTGAAACAACAGAGGTTTCTACGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAAcgc                                                                                                                                         <  1:453861/140‑1 (MQ=255)        gcgcATTGAACGCGCGCGCCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAGGCAACAGAGGTTGCTATGCTGTCCGGTCGGGGTCATCGGTTAGGTCGTTTTCGTAGAAATAAACgccgcc                                                                                                                                     >  2:61515/1‑143 (MQ=255)        gcgcATTGAACGCGCGCGCCACGGTGATGCGGGAGGAATGCGTGGTGCCGCCTTCCTACATCTAACCGAATAAACAACAGAGGTGGATATGCTGTCGCGTCGGGGTCAACGGGTAAGTGGTATTCGTAAAAATCAAggcacac                                                                                                                                     >  1:238696/1‑139 (MQ=255)             ttGAACGCGCGCGCCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTGAAAATAAACGCCGCCTgcgc                                                                                                                                >  1:346575/1‑143 (MQ=255)               gAACGCGCGCGCCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGa                                                                                                                              <  2:124057/143‑1 (MQ=255)                    cgcgcgcCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGTGAGCGtt                                                                                                                         <  1:406883/143‑1 (MQ=255)                    cgcgcgcCACGGTGATGCGGGAGGAATGCGTGGGGCGGCCTTCCTACATCTCACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGtt                                                                                                                         <  2:558009/143‑1 (MQ=255)                         gcCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAAACGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGCTGGTTGCGGAAAAATACACGCCGCATGCGCGAGCGTTTCCgc                                                                                                                    >  2:232162/1‑142 (MQ=255)                           cACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCa                                                                                                                  >  2:697047/1‑143 (MQ=255)                           cACGGTGAGGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGCTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGACTGCGCGAGCGTTTGCGTCa                                                                                                                  <  2:512351/143‑1 (MQ=255)                                      gggagggaTGCGTGGGGCGGCCTTCGTACATCTAACCGATTAAACAACAGAGGTGGCTCTGCTGTCGCTTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAATGCCGCCTGCGCGAGCGTTTGCGTCAGCGTAtttttt                                                                                                       <  1:263468/143‑1 (MQ=255)                                       gggggaATGCGTGGTGCGGCCTTGGTACGTCTAGCCGATTGAACAGCGGAGGTTGCTATGGTGTGGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAATTAAACGCCGCATGCGCGAGCGTTTGCGTCAGCGTAttttttt                                                                                                      <  2:596111/140‑1 (MQ=255)                                                    gtgCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAgtg                                                                                         <  2:387388/143‑1 (MQ=255)                                                         ttcTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGCGCGTGAGTGTCAGCGTATTTTTTTCAGCGACAAAggggtggc                                                                                    >  1:710073/3‑141 (MQ=255)                                                         gCCTTCCTACATCTAACCGATTACACAGCAGAGGTTGCTATGCGGTCGCGACGGGATCATAGGTTAAGGCGGTTTCGTAAAAATAAGCGCGGCCTGGCGGAGGGGTTGCGGCAGCGGTGTTTTTTGAGAGAGACGGTGGAGcc                                                                                    >  1:238578/1‑143 (MQ=255)                                                          tcTTCCTACATCTAACCGATTCAACAACAGAGGTTGCTATGCTTTCGCGTCGGGGCCATCGGTTCAGTCGTGTTCGTAGAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCg                                                                                   <  1:33974/142‑1 (MQ=255)                                                                 aCATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGCTAAAGTGGGGCCGGGAGCaa                                                                            >  2:220219/1‑143 (MQ=255)                                                                   aTCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATg                                                                          <  1:586064/143‑1 (MQ=255)                                                                           gATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAAcc                                                                  >  2:515018/1‑143 (MQ=255)                                                                           gATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCCTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTAAGAGATAAAGTGGTGCCGGAAGCAAGGGTAAAAcc                                                                  >  1:362750/1‑143 (MQ=255)                                                                            aTTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATAGGTTAAGTCGTTTTCGTAAAAATAAACGCCGGCTGCGCGAGCGTTTGCGTGAGCGTATTTTTCTCAGAGATAAAGCGGGGCCGCAAACAATGaaaaaaaga                                                                 >  1:24787/1‑140 (MQ=255)                                                                            aTTAAACAACAGAGGTTGCTACGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCa                                                                 >  1:28517/1‑143 (MQ=255)                                                                             ttAAACAACAGAGGTGGCTATGCTGTCGCGTCGGGGTCAGCGGTTAAGTCGTTTTCGGAAAAATAAACGCGGCGTGCGCGAGCGTTGGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCaa                                                                <  1:238669/143‑1 (MQ=255)                                                                               aaaCAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAaga                                                              <  2:387194/143‑1 (MQ=255)                                                                                aaccacAGAGGTTGCTATGCTGTCACGGCGGGGGCATCTGTTAAGTCGTTTTCGTAAAAATGAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAACGGAAAAACCAagag                                                             >  2:681066/1‑143 (MQ=255)                                                                                  caacatctgTTGCTATGCTGTCGCGTCGGGGTCCTCTGTTAAGTCGTTTTCGGAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTa                                                           <  1:528269/135‑1 (MQ=255)                                                                                  caacaGAGGTTGCTATGCTGTCGCGTCGGGGTTATCGGTTAAGTCGTTTTCGTAAAAATACACGCCACCTGCGCGAGCGCTTGCGTCAGCGTATTTTTTTCAGCGATGACCTGGTCCCGGCAGCAATGGACGACCCCAGAGTa                                                           >  1:625978/1‑143 (MQ=255)                                                                                     ccgagGTCGTTATGCTGTCGCGTCGTGGTTATCGGTTAAGTCGTTTTCGTAACAATAAACGCCGTCTGCTCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTc                                                        <  1:199630/141‑1 (MQ=255)                                                                                     caccggTTGCTTTGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTc                                                        <  2:596116/139‑1 (MQ=255)                                                                                      agagGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCg                                                       <  2:188999/143‑1 (MQ=255)                                                                                             gCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAGCCAAGAGTACTCGTACTGAc                                                >  2:609870/1‑143 (MQ=255)                                                                                              cTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACa                                               >  2:184862/1‑143 (MQ=255)                                                                                               tATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATCAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAg                                              >  2:673608/1‑143 (MQ=255)                                                                                                 tGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGGCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAggg                                            <  2:331395/143‑1 (MQ=255)                                                                                                 tGCCGTCGCGGCGGGCTCATCGGTTAAGTCGTGTGCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCCGAGATAAAGTGGTGCCGGAAGCAATGGAAACACCCAGAGGTTGCGTACTGACAggg                                            <  1:261791/143‑1 (MQ=255)                                                                                                 ggCTGTGGCGGCGTGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGAGAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAggg                                            <  1:25176/142‑1 (MQ=255)                                                                                                    tGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCACTGGAAAAACCAAGAGTACTCGTACTGACAggggaa                                         >  2:45759/1‑141 (MQ=255)                                                                                                           gcgcggTCGTCGGTTAAGTCGTTTTCGGAAAAATAAACGCCGTCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTGAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAAttt                                  <  1:649352/139‑1 (MQ=255)                                                                                                                        ttAAGTCGGTTTCGTAATAAGAGTGGCCGCCTGGGCGAGCGTTTGCGTCAGCGTAGTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAgg                     <  1:194643/143‑1 (MQ=255)                                                                                                                             tCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTc                >  2:92397/1‑143 (MQ=255)                                                                                                                                 tttCGGAAAAATATACGCCGCCTGCGCGAGCGGTTGCGTCAGCGTGTTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTCGTAc            <  1:190075/143‑1 (MQ=255)                                                                                                                                     gTAAAAATAGACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGACGCACTGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTCGTACCttt        <  1:352779/143‑1 (MQ=255)                                                                                                                                     gTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTAGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATACGGTATGCGTACCctt        >  1:464246/1‑143 (MQ=255)                                                                                                                                          aaTAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGCTACAGTGGTGCCCGAAGCAATGGACACACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGCATCAGCTCTCCGTACCTTTCgcgc   >  1:105053/1‑143 (MQ=255)                                                                                                                                           aTAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTCGTACCTTTCGcgcc  >  1:274346/1‑143 (MQ=255)                                                                                                                                             |                                                                                                                                             GTGTTCCGCGCATTGAACGCGCGCGCCACGGTGATGCGGGAGGAATGCGTGGTGCGGCCTTCCTACATCTAACCGATTAAACAACAGAGGTTGCTATGCTGTCGCGTCGGGGTCATCGGTTAAGTCGTTTTCGTAAAAATAAACGCCGCCTGCGCGAGCGTTTGCGTCAGCGTATTTTTTTCAGAGATAAAGTGGTGCCGGAAGCAATGGAAAAACCAAGAGTACTCGTACTGACAGGGGCAGGAATTTCTGCGGAATCAGGTATTCGTACCTTTCGCGCC  >  NC_000913/1179425‑1179705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.