New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 354697	45 (1.070)	3 (0.080)	3/268	6.1	6.6%	noncoding (99/171 nt)	REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences
	?	NC_000913	= 354713	42 (1.050)					noncoding (115/171 nt)	REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences	REP26 (repetitive extragenic palindromic) element, contains 4 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGAT  >  NC_000913/354573‑354850                                                                                                                                              |                                                                                                                                          gCCAGGCGAGGGAGGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGGACCGTAGGTCGGATAAGGCGCTCGCGTCGCAt                                                                                                                                         <  1:444499/143‑1 (MQ=255)             aaGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGc                                                                                                                             >  1:467265/1‑143 (MQ=255)                agTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGCTTTATCATGCCTACGGACCTGAACCGTAGGTCGGCTAAGGCGGCGGCGTCGCATCCGACACCATGcccc                                                                                                                          >  1:645089/1‑140 (MQ=38)                  taggcatttGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGTCGCGGTGTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGa                                                                                                                        <  2:168281/136‑1 (MQ=39)                                      cgcgcgGTGCAGCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAcg                                                                                                    <  2:490490/143‑1 (MQ=255)                                              gcgtCCGGCTCTGTGTGCC‑GATGCCTCATGCGACGCGGACGCGTTTTAGCGTGCCTACCGACCGGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTAt                                                                                            <  1:79389/140‑1 (MQ=38)                                               gcatcggcacacagtgCCGGATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTAt                                                                                            >  2:519254/14‑143 (MQ=38)                                                 tCCGGCACTGTGTGCC‑GGTGCCTGATGCGCCGCTGACGCGTTGTGGCATGCCTACGGACCTGAACCGTAGGTCGCATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAg                                                                                         <  1:479214/143‑1 (MQ=38)                                                 tCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGAccgggctcatcaa                                                                                         >  1:605274/1‑131 (MQ=255)                                                   cGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                                       <  2:84932/143‑1 (MQ=255)                                                   cGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                                       <  2:148618/143‑1 (MQ=255)                                                   cGGCACTGTGTGCC‑GAGGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                                       <  1:585906/143‑1 (MQ=255)                                                      cacggggtgCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTa                                                                                    <  2:550824/137‑1 (MQ=255)                                                                c‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATGCGACACCATGCTCAGATGCCTGATGCGACGCTGGCGCGTCTTCTCCCGCCCACCCACTGttt                                                                          >  2:365541/1‑143 (MQ=39)                                                                       cTGGTGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTacac                                                                    <  2:287986/143‑1 (MQ=255)                                                                       cTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACCCGTCTTATCAGGCCTACCCACTGTTTTTacac                                                                    <  2:185861/143‑1 (MQ=255)                                                                        tGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACAcc                                                                   >  2:230067/1‑143 (MQ=255)                                                                             cGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCGGATGCCTGGTGCGACGCTGACGCGTCTTATCAGGCGTGCCCACTGtgttgtgaccggtaa                                                              >  2:57058/1‑132 (MQ=38)                                                                              gACGCTGACGCGTTTTATCATGCCNACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCNGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCANGCCTACCCACTGTTTTTACACCGACAAt                                                             >  2:48094/1‑143 (MQ=255)                                                                               aCGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCCTCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAAtt                                                            >  2:606220/1‑143 (MQ=255)                                                                                  cTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAAttttt                                                         <  2:97767/143‑1 (MQ=255)                                                                                    gtcgcttgcgaTCATGCCTACGGACCTGAACCGTACGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTcc                                                       <  2:365289/133‑1 (MQ=255)                                                                                       gcgTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCCTGCTCAGATGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACCCACTGTTTTTACACCCATAATTTTTccccc                                                    >  2:37370/1‑143 (MQ=255)                                                                                            ttctCATTCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCtt                                               <  2:730267/140‑1 (MQ=255)                                                                                                cATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTg                                           <  2:391883/143‑1 (MQ=255)                                                                                                 aTGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGGTTTGACACGGATCATTTTTCCCCCACCCTTTGGc                                          >  1:374406/1‑143 (MQ=38)                                                                                                   gCCTCCGGCCCTGGCCCGTAGGTCGGATCAGGCGCTCGCGTCGCATCCGACACCACGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCAc                                        <  2:253238/143‑1 (MQ=38)                                                                                                    ccTGCGGACCTGAACCGTAGGGCGGATAAGGCGCGCGCGGCGCAGCCGACACCAGGCTCAGATGCCTGATGCGGCGCTGACGCGTCTGATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACt                                       <  1:10719/143‑1 (MQ=255)                                                                                                    ccTACGGACCTGACGCGTAGGTCGGGTACGGCGCTCGCGTCGCATCCGACACCCTGCTCAGATGTCTGGTGCGACTCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTCCACCTATAATTTTTCCCCCACCTTTTTGCACt                                       <  1:538621/143‑1 (MQ=37)                                                                                                     cTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtc                                      >  2:184642/1‑143 (MQ=255)                                                                                                      tACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGGACtca                                     >  1:416871/1‑143 (MQ=255)                                                                                                      tACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtcc                                     >  2:670362/1‑142 (MQ=255)                                                                                                       aCGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCGGACACCAGGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACtcat                                    <  1:674205/143‑1 (MQ=255)                                                                                                         ggACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCACACCTTTTTTCACtcattc                                  >  2:452362/1‑143 (MQ=255)                                                                                                             cTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCatat                              >  2:730410/1‑143 (MQ=255)                                                                                                             cTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCAGGCGCAGATGCCTGATGCGACGCTGGCGCGTCTTATCCGGCCTACCCACTGTTTTTACACCGGTAATTCGTCCCCCACCTTTTTGCACtcccccatat                              >  2:368695/1‑135 (MQ=37)                                                                                                                        gTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATACTTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAatatat                   >  1:693633/1‑143 (MQ=255)                                                                                                                            gATAAGGCGCTCGCGTCGCATCCGTGACCGTGCTTAGGTGGCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTcc               >  1:89732/1‑143 (MQ=39)                                                                                                                             aTAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACGCCTTCCTATAAAAAATATATTTccc              >  2:630927/1‑143 (MQ=255)                                                                                                                                 ggCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCCTTCATATAAAAACTATATTTCCCCACg          >  1:497717/1‑143 (MQ=255)                                                                                                                                  gcgcTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGACTACCCACTGTTTTTCCACCGCTACTTTTTCCCCCACCTTTTTGCCCTCATTCATATAAAAAATATATTTCCCCACgc         >  1:127593/1‑142 (MQ=39)                                                                                                                                     cTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTCTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGaaaa      <  1:257770/143‑1 (MQ=255)                                                                                                                                         cgTCGCATCCGACACCATGCTCAGTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGAt  <  1:332441/143‑1 (MQ=255)                                                                                                                                              |                                                                                                                                          GCCAGGCGATGGAAGAGTAGGTTATTGTCGGATGCGTCGCGCGGTGCATCCGGCACTGTGTGCC‑GATGCCTGATGCGACGCTGACGCGTTTTATCATGCCTACGGACCTGAACCGTAGGTCGGATAAGGCGCTCGCGTCGCATCCGACACCATGCTCAGATGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACCCACTGTTTTTACACCGATAATTTTTCCCCCACCTTTTTGCACTCATTCATATAAAAAATATATTTCCCCACGAAAACGAT  >  NC_000913/354573‑354850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.