mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.31.0 revision 69e7c3c0fa11
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 78 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP016816 | 202,485 | 0 | T | . | 61.7% | 208.5 / inf | 640 | intergenic (+263/‑412) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 311,150 | 0 | A | . | 61.7% | 1071.1 / inf | 1450 | intergenic (‑73/‑241) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| * | CP016816 | 311,149 | 0 | T | . | 60.8% | 938.7 / inf | 1431 | intergenic (‑72/‑242) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| * | CP016816 | 76,893 | 0 | T | . | 59.3% | inf / inf | 2451 | intergenic (‑142/+43) | JCVSYN2_00300/JCVSYN2_00305 | UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein |
| * | CP016816 | 165,250 | 0 | T | . | 55.2% | inf / inf | 2067 | intergenic (+214/‑328) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 437,880 | 1 | . | A | 55.1% | inf / inf | 792 | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| * | CP016816 | 437,880 | 2 | . | T | 55.1% | inf / inf | 792 | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| * | CP016816 | 203,895 | 1 | . | T | 54.5% | inf / inf | 928 | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 202,486 | 0 | T | . | 53.2% | 575.3 / inf | 637 | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 105,339 | 0 | T | G | 52.1% | 1536.6 / inf | 1673 | intergenic (+834/+92) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| * | CP016816 | 202,467 | 0 | A | . | 48.3% | inf / inf | 739 | intergenic (+245/‑430) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 202,496 | 0 | A | . | 47.8% | 129.5 / inf | 421 | intergenic (+274/‑401) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 420,253 | 0 | C | A | 44.5% | 1811.5 / inf | 2185 | intergenic (‑536/+307) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| * | CP016816 | 202,494 | 0 | A | T | 41.9% | 417.4 / inf | 633 | intergenic (+272/‑403) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 202,487 | 0 | T | . | 41.0% | 585.0 / inf | 641 | intergenic (+265/‑410) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 202,488 | 0 | T | . | 38.2% | 702.1 / inf | 629 | intergenic (+266/‑409) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 203,912 | 0 | G | T | 36.7% | 1504.4 / inf | 1171 | intergenic (+296/+162) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 202,489 | 0 | A | . | 36.4% | 870.7 / inf | 640 | intergenic (+267/‑408) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 165,303 | 0 | C | A | 36.1% | 4545.5 / inf | 2675 | intergenic (+267/‑275) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 203,937 | 0 | C | A | 35.8% | 2201.3 / 242.1 | 1472 | intergenic (+321/+137) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| Marginal new junction evidence (lowest skew 10 of 193 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP016816 | = 437880 | 317 (0.130) | 875 (0.300) +ATAT |
165/188 | 3.9 | 65.4% | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | 437881 = | 548 (0.180) | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | 437881 = | 748 (0.240) | 854 (0.350) | 172/204 | 5.1 | 62.6% | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | = 437884 | 416 (0.170) | intergenic (‑188/+234) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | 311153 = | 1835 (0.600) | 294 (0.120) | 129/208 | 12.6 | 16.9% | intergenic (‑76/‑238) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| ? | CP016816 | = 311148 | 1378 (0.550) | intergenic (‑71/‑243) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 | |||||
| * | ? | CP016816 | 76896 = | 2749 (0.900) | 348 (0.130) | 136/226 | 13.3 | 12.8% | intergenic (‑145/+40) | JCVSYN2_00300/JCVSYN2_00305 | UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein |
| ? | CP016816 | = 76892 | 2257 (0.820) | intergenic (‑141/+44) | JCVSYN2_00300/JCVSYN2_00305 | UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein | |||||
| * | ? | CP016816 | 437881 = | 913 (0.300) | 702 (0.280) | 114/208 | 15.1 | 50.1% | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | = 437886 | 646 (0.260) | intergenic (‑190/+232) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | 165253 = | 2283 (0.750) | 385 (0.140) | 104/220 | 18.1 | 16.7% | intergenic (+217/‑325) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| ? | CP016816 | = 165249 | 1853 (0.690) | intergenic (+213/‑329) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser | |||||
| * | ? | CP016816 | = 203895 | 677 (0.250) | 405 (0.140) +TTT |
99/214 | 18.4 | 35.1% | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| ? | CP016816 | 203896 = | 755 (0.250) | intergenic (+280/+178) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase | |||||
| * | ? | CP016816 | = 34945 | 2129 (0.790) | 436 (0.150) +AAA |
87/216 | 20.9 | 15.7% | intergenic (+49/+117) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH |
| ? | CP016816 | 34946 = | 2395 (0.780) | intergenic (+50/+116) | JCVSYN2_00105/JCVSYN2_00110 | ABC transporter permease/cell division protein FtsH | |||||
| * | ? | CP016816 | 117946 = | 3692 (1.210) | 127 (0.050) | 82/212 | 21.6 | 4.0% | intergenic (+67/+792) | JCVSYN2_00460/JCVSYN2_00465 | ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter permease |
| ? | CP016816 | = 117942 | 3029 (1.180) | intergenic (+63/+796) | JCVSYN2_00460/JCVSYN2_00465 | ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter permease | |||||
| * | ? | CP016816 | = 202486 | 252 (0.080) | 532 (0.170) | 99/252 | 21.8 | 66.7% | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| ? | CP016816 | 202490 = | 280 (0.090) | intergenic (+268/‑407) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein | |||||