New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP016816 = 349452129 (0.790)436 (0.150)
+AAA		 87/216 20.9 15.7% intergenic (+49/+117) JCVSYN2_00105/JCVSYN2_00110 ABC transporter permease/cell division protein FtsH
?CP016816 34946 = 2395 (0.780)intergenic (+50/+116) JCVSYN2_00105/JCVSYN2_00110 ABC transporter permease/cell division protein FtsH
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 2953 total aligned reads displayed.

TTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCTTTA  >  CP016816/34819‑35074
                                                                                                                                         |                                                                                                                                 
  tACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAAAGCTAAGTGAAGATGAAGAAAAATAAAAGATTAAACCAAATACATTA‑AGTATCTAATTTTTATT‑A‑ACTA‑AT‑‑‑G‑‑‑aaa                                                                                                                                 >  2:6394296/1‑128 (MQ=255)
      tcttTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑aaaaaaa                                                                                                                             >  2:6195809/1‑128 (MQ=255)
      tcttTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGAATAAACCAAATACATTA‑TATTTGGTTTTATTATT‑T‑ACTA‑TT‑‑‑G‑‑‑aaaaaaa                                                                                                                             >  2:3586558/1‑128 (MQ=255)
         ttATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACAAAATACATTG‑TGATTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑aaaaaaaaaa                                                                                                                          >  2:5294466/1‑128 (MQ=255)
           attaGTTTCAACAAAAAGAGTAACCAATCCTGAACAAAGTAAAATTCTAATTTAAGTTTTTGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑aaaaaaaaaaaa                                                                                                                        <  1:4313192/125‑1 (MQ=255)
           attaGTTTAAAAAAAAATAGTAATAAATGCTGAAACAATTACAATGCTAATTGAAGTTTATTAATAATAAAATATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑T‑‑‑aaaaaaaaaaaa                                                                                                                        <  1:6507729/125‑1 (MQ=255)
             taGTTTAAACAAAAATAGAAAGAAATGCTGAACCAACTACAATGTTAATTGAAGTTTATTAAAAATAAAATAAAAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑T‑‑‑aaaaaaaaaaaaaa                                                                                                                      <  1:1825317/127‑1 (MQ=255)
              aGTTTCAACAAAAAGAGTAAGAAATGCTGAAACAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGCTTTTTTTATA‑T‑AATA‑TT‑‑‑G‑‑‑aaaaaaaaaaaaaaa                                                                                                                     >  1:3976305/1‑128 (MQ=255)
                   caacaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGATTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAaat‑aatt                                                                                                               >  1:5133350/1‑127 (MQ=255)
                     acaaAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑aaaaaaaaaaaaaaaa‑aaatat                                                                                                             >  1:6333287/1‑124 (MQ=255)
                       aaaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑TAAAAAAAAAAAAaat‑aattaaat                                                                                                           >  1:2584688/1‑123 (MQ=255)
                        aaaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATAAtt                                                                                                          >  1:2386323/1‑128 (MQ=255)
                         aaaGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑GA‑‑AAAAAAAAAAAAAAAT‑AATATAAtt                                                                                                          >  1:3673695/1‑128 (MQ=255)
                           agatTAATAAATTCTTAACCAATTACAATGATAATTTAATTTTATTAATAATAAAATATTAAACAAAATAAATTT‑TTTTTGTTTTTTTTATT‑T‑AATA‑TT‑‑‑T‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGc                                                                                                       <  1:882619/128‑1 (MQ=255)
                             agTAAGAAATGCTGAACCAAGTACATTGCTAAGTGAAGTTGATGAATAATAAAAGAATAAACCAAATACATTG‑TGTTTGTTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAACAaa‑aatataaaattaaa                                                                                                     >  1:3304647/1‑121 (MQ=255)
                                aaGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑GA‑‑AAAAAAAAAAAAAAAT‑AATATAAttttaaaaa                                                                                                   >  1:4527695/1‑122 (MQ=255)
                                   aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑GA‑‑AAAAAAAAAAAAAAAA‑AATATAAttttaataaaaa                                                                                                >  1:4668858/1‑119 (MQ=255)
                                   aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAat‑aatataatataaaaaatata                                                                                               >  2:1782124/1‑116 (MQ=255)
                                   aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑‑‑AAAAAAAAAAAAAT‑AATATAATTTGAATACTATaaa                                                                                             >  1:6210024/1‑128 (MQ=255)
                                   aaaTGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGATTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAA‑AATATAAattaaataataaa                                                                                               >  2:3112819/1‑118 (MQ=255)
                                       gCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGTTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AAAATAATTATAATAATATaaaaa                                                                                           >  1:4903528/1‑128 (MQ=255)
                                       gCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑GA‑‑AAAAAAAAAAAAAAAT‑AATATAATTTTAATAATATaaaa                                                                                            >  1:5334590/1‑128 (MQ=255)
                                         tGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AAAATAATTTTAATATTATAAAAAAt                                                                                         >  1:1313228/1‑128 (MQ=255)
                                             ccAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑T‑‑‑AAAAAAAAAAAAAAAA‑AAAATATTTTAAATACTATAAAAAAtttat                                                                                     >  1:2668084/1‑125 (MQ=255)
                                             ccAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTATGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAA‑AAAATAATTTAAAAAAAATaaaaaaatttt                                                                                     >  2:2096105/1‑123 (MQ=255)
                                               aaGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAA‑AATATAATTTGAATACTATAAAAAATTGtttt                                                                                   >  1:2907592/1‑128 (MQ=255)
                                                aGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AAAATAATTTTAATAATAAAAAAAATTTtattt                                                                                  >  1:993794/1‑128 (MQ=255)
                                                         cTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGTTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAATA‑AAAAAAATTTGAAACATAAAAAAAATttttttaaaaaaaatt                                                                         >  2:824787/1‑118 (MQ=255)
                                                           aaGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑GAAAAAAAAAAAAAAAAAAA‑AAAATAATTTGAAAAAAAAAAAAAATTGTTTTTAaaaaaat                                                                          >  2:4191763/1‑127 (MQ=255)
                                                           aaGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATATTTTGCATACTATAAAAAATTTTTTTTCAAATAAGTAt                                                                       >  1:6099090/1‑128 (MQ=255)
                                                           aaGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTTAATAATATAAAAAATTTTTTATAAAAAAAatat                                                                       >  2:2385642/1‑128 (MQ=255)
                                                           aaGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑‑AAAAAAAAAAAAAAT‑AATATAATTTGAATACTAAAAAAAATTGTTTTTCAAATAattatt                                                                      >  2:6308740/1‑128 (MQ=255)
                                                            agtgtattttttgaATATTAATAGAATAAACAAAATAAATTT‑TGTTTGGTTTTTTTTTT‑T‑AATA‑TT‑‑‑‑‑‑‑TAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTc                                                                     <  2:3416817/117‑1 (MQ=255)
                                                                aaGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAATAAATTGTTTTTCAATTAAGTATTCatg                                                                  >  1:5033109/1‑126 (MQ=255)
                                                                 attttttgaATTATAAAATTTTAAACAAAATAAATTT‑TTTTTTGTTTTTTTATT‑T‑ACTT‑TTTA‑A‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAg                                                                   <  2:3277783/122‑1 (MQ=255)
                                                                   ttGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AAAATAATTTTAATACTATAAAAAATTGTTTTTAaaaaaataaataattata                                                               >  1:4816613/1‑116 (MQ=255)
                                                                    tgatgaATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTaa                                                             >  1:6407338/1‑128 (MQ=255)
                                                                      atgaATAATAAAATTTTAAAACAAATAATTTG‑TGTTTGTTTTTTTTATT‑T‑AATA‑TT‑‑‑G‑‑‑‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAAt                                                           <  1:2120885/128‑1 (MQ=255)
                                                                       ttaataaaAAAATTTTAAAAAAAATAATTTT‑TGTTTTGTTTTTTTTTT‑T‑AATA‑TTTAAA‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTa                                                              <  2:2289986/126‑1 (MQ=255)
                                                                       tgaATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGAATACTATAAAAAATTGTTTTTCAAATAATTATTCATGATTAAAt                                                           >  1:2464958/1‑128 (MQ=255)
                                                                       tgaATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAA‑AAAAAAATTTAAATACTATAAAAAATTTATTTTAAAATAATTATTAAAGAGTaaaa                                                           >  2:2819911/1‑127 (MQ=255)
                                                                        taaaaaaaaaaTATTAAACAAAATACTTTG‑TTTTTTTTTTTTTTATT‑T‑ACTATTT‑‑‑A‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAAt                                                           <  2:4453853/121‑1 (MQ=255)
                                                                        gaATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAAtt                                                          >  1:576097/1‑128 (MQ=255)
                                                                          ataataAAATTAAAAACAAAATAAATTT‑TTTTTTGTTTTTTTTTT‑T‑ATTA‑TT‑‑‑T‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTa                                                        <  2:5571501/128‑1 (MQ=255)
                                                                          ataataAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATAAAATTTTCATAAAATAAAAAATTGTTTTTAAAATAATTATACAAGAGTAATTTTa                                                        >  2:1497994/1‑128 (MQ=255)
                                                                          aaaataaAAGATTAAAAAAAATACATTT‑TGTTTGGTTTTTTTATT‑T‑AATA‑TT‑‑‑T‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTa                                                        <  1:5650004/126‑1 (MQ=255)
                                                                            aataaAAGATTAAAACAAATAAATTG‑TGTTTGGTTTTTTTATT‑T‑AATATTT‑‑‑A‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTaa                                                       <  2:5676277/128‑1 (MQ=255)
                                                                             ataaAATATTAAACAAAATATATTT‑TTTTTGGTTTTTTTATT‑TAATTT‑TT‑‑‑A‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTaaa                                                      <  1:1979337/128‑1 (MQ=255)
                                                                              taaAATATTAAACTAATTTAATTG‑TGTTTGGTTTTTTTTTT‑T‑AATT‑TT‑‑‑T‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTaaaaa                                                    <  2:5422760/128‑1 (MQ=255)
                                                                              taaAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTTTTTTTAAAATAAGTATTCAGGAGTAAATTTaaaaa                                                    >  1:3116068/1‑128 (MQ=255)
                                                                                   gATTAAACCAAATACATTG‑TTTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAA‑AATATAATTTTAATAAAATAAAAAATTTTTTTAAAAATAAATATTAATAATAAAATTTAAAAAACCaa                                               >  2:3891293/1‑128 (MQ=255)
                                                                                    aTTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAATTTTAAAAAACCAag                                              >  1:5243772/1‑128 (MQ=255)
                                                                                      tAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑GAAAAAAAAAAAAAAAAAAT‑AATATAATTTGAATAATATAAAAAATTTTTTTTAAAATAATTATTAAGGATAAAATTTAAAAAACCaa                                               >  1:1205879/1‑128 (MQ=255)
                                                                                      tAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATTTAATTTGAATAATATAAAAATTTTTTTTAAAAATAATTATTAAGTATTAAATTTTAAAAAACAatag                                            >  1:1115039/1‑128 (MQ=255)
                                                                                       aaaCCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑GA‑‑AAAAAAAAAAAAAAAT‑AATATAATTTTAATAATATAAAAAATTGTTTTTAAAATAAGTATTCATTATTAAATTTAAAAAAACAatag                                            >  1:3217543/1‑128 (MQ=255)
                                                                                        aaacAAATAAATTTTTGTTTGTTTTTTTTTTT‑T‑AAAA‑TT‑‑‑‑‑‑‑TAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAttt                                          <  2:405108/125‑1 (MQ=255)
                                                                                        aaCCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑GA‑‑AAAAAAAAAAAAAAAT‑AATATAATTTAAATAAAAAAAAAAATTTTTTTAAAAATAAAAATTAATAATAAAATTTaaaaaaaaaaaaat                                           >  2:4911221/1‑120 (MQ=255)
                                                                                         cagaatttcATTT‑TGTTTGGTTTTTTTATT‑T‑AATA‑TT‑‑‑‑‑‑‑TAAAAATAAAAAAAAT‑AATATAATTTGCATACTATATTAAATTGTTTTTCAATTAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtat                                        <  2:5853224/120‑1 (MQ=255)
                                                                                         aacAAATACTTTG‑TTTTTGTTTTTTTTATT‑T‑AATA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTta                                         <  2:2960857/126‑1 (MQ=255)
                                                                                         aCCAAATAAATTG‑TTTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑‑‑‑‑TAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTtat                                        <  1:5440937/128‑1 (MQ=255)
                                                                                          acAAATTCATTG‑TTGTTTGTTTTTTTATT‑T‑AAAA‑TT‑‑‑‑‑‑‑TTAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTtata                                       <  2:1139904/127‑1 (MQ=255)
                                                                                           cAAATACATTG‑TGTTTGTTTTTTTTATT‑T‑AATA‑TT‑‑‑‑‑‑‑‑‑TAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAAt                                    <  1:3546491/128‑1 (MQ=255)
                                                                                           cAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGATTAGTATAAAAAATTTTTTTTCAAATAAGTATAAAGTATAAATTTTaaaaaaaaattattttta                                       >  1:2757781/1‑116 (MQ=255)
                                                                                           acaaataaaagttgtttgttTTTTTTTTT‑T‑AATA‑TT‑‑‑‑‑‑‑TAAAAAAAAATAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGATTtata                                       <  1:3461753/116‑1 (MQ=255)
                                                                                            aaaTACATTG‑TGTTTTGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAATAAATATAATTTTAATAAAATAAAAATTTTTTTATAAAATAATTATTATATAATAAATATAAAAAAAAAATAGTtaaa                                       >  2:2578653/1‑126 (MQ=255)
                                                                                            aaaTACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATATTTTGCATTCTATAAAAAATTTTTTTTAAAATAAGTTTTCAGGAGTAAATTTAAAAAACAAAGTTTTATaa                                      >  2:3714574/1‑128 (MQ=255)
                                                                                            aaaTACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATAAAATTTGAATAAAAAAAAAAATTTTTTTTAAAATAAGTATAAATAATAAAATTTAAAAAACAAATAATTaaaa                                      >  2:4756261/1‑128 (MQ=255)
                                                                                              atatatTG‑TTTTTTTTTTTTTTATT‑A‑AATT‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATATTTTGCATACTATAAAAAATTGTTTTTCTAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAAt                                    <  1:6610118/128‑1 (MQ=255)
                                                                                               tACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTTTTTTTAAAATAATTATTCAGTATTAAATTTAAAAAACCAAGAGTTATAAATc                                   >  1:5535633/1‑128 (MQ=255)
                                                                                               tACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑‑AAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTATATTTAAAAAACAAAGATGTATaataaa                                  >  1:4204073/1‑124 (MQ=255)
                                                                                                 cATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑GA‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGAATAATATAAAAAATTTTTTTTAAAATAATTATAAAGAATTAAATTTAAAAAACAAATATTTATaaaaaa                                  >  1:170141/1‑125 (MQ=255)
                                                                                                  aTTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAA‑AATATATTTTGAATACTATAAAAAATTGTTTTTAAAATAATTATAAAGAATTAATTTTAAAAAAACAATATTTATAAATATTg                                >  1:2267136/1‑128 (MQ=255)
                                                                                                   ttG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑GAA‑AAAAAAAAAAAAAAAT‑AATAAAATTTAAAAAATATAAAAAATTTTTTTTAAAAAAATTTTTAAGGATTAAATTAAAAAAACAAATATTAATAAAtatg                                 >  2:2188213/1‑125 (MQ=255)
                                                                                                   ttG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAAAGTTATaaaattggt                               >  1:4418255/1‑122 (MQ=255)
                                                                                                   ttG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTCAATACTAAAAAAAATTGTTTTTCAAATAACTATTCAGGAGTAAATTTAAAAAACCAAGATTTATAAATATTgg                               >  2:4596225/1‑128 (MQ=255)
                                                                                                      gtatttGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑‑AAAAAAAAAAAAAAT‑AAAATAAATTGAATAATATAAAAAATTGTTTTTCAAATAAGTATAAAGGAGTAAATTTAAAAAACCAAAAGTTATAAATCTTTGttt                            >  1:3781758/4‑128 (MQ=255)
                                                                                                       tgtTTGGTTTTTTTATT‑T‑ACTT‑TT‑‑‑T‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGttt                            <  1:1419206/128‑1 (MQ=255)
                                                                                                       tgtTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑‑‑AAAAAAAAAAAAAT‑AATATAATTTGCATACAATAAAAAATTGTTTTTCAAATAAGTATTCAGTAGTAAATTTAAAAAACCAAGAGTAATAAAAATTTGttttt                          >  2:1269916/1‑128 (MQ=255)
                                                                                                       tatttGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGAATACTATAAAAAATTTTTTTTCAAATAATTATAAAGGATTAAATTAAAAAAACCAAATTTTATAAAAATTGGttt                            >  2:1383561/3‑128 (MQ=255)
                                                                                                          ttGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑GAA‑AAAAAAAAAAAAAAAA‑AAAATAATTTGATTAATATAAAAAATTTTTTTTAAAATAATTTTTAATGATTAAATTTTAAAAACAAAGATTTTTAAATATTGGtttt                           >  2:5963389/1‑128 (MQ=255)
                                                                                                            tgTTTTTTTATTAA‑AAAA‑TT‑‑‑A‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTg                        <  1:1579639/127‑1 (MQ=255)
                                                                                                             gTTTTTTTATTAT‑AAAT‑TT‑‑‑A‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGt                       <  2:2696753/128‑1 (MQ=255)
                                                                                                                  tttatt‑t‑aCTATTT‑‑‑A‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTtata                  <  2:5760595/128‑1 (MQ=255)
                                                                                                                  tttatt‑t‑aCTA‑TT‑‑‑G‑‑‑‑AAAAAAAAAAAAAAT‑AATAAAATTTGCATAATATAAAAAATTTTTTTTCAAATAAGTATTAATGATTAAATTTAAAAAACAAAAAGTTATAAATCTTGGTTTTTTTTTTAtatt                >  2:5023772/1‑128 (MQ=255)
                                                                                                                  tttatt‑t‑aATA‑TT‑‑‑T‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTatat                 <  2:6097520/128‑1 (MQ=255)
                                                                                                                   ttatt‑t‑aCTA‑TT‑‑‑GA‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTAT‑AAAAATTGTTTTTAAAATAATTATTCAGGATTAAATTTAAAAAACCAAAATTTATAAATATTGTTTTTTTTTTTAtttt                >  2:1935922/1‑128 (MQ=255)
                                                                                                                   ttatt‑t‑aATT‑TT‑‑‑T‑‑‑AAAAAAAAAAAAAAAT‑ATTATAATTTGCATAATATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTAtatt                <  1:760034/128‑1 (MQ=255)
                                                                                                                    tatt‑a‑aATA‑TT‑‑‑T‑‑‑CAAAAAACAAAAAACT‑AATATAAATTGCATACTATAATAAATTGTTTTTCAAATAAGTATTCACGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTAtatta               <  2:653779/128‑1 (MQ=255)
                                                                                                                       t‑t‑aCTA‑TT‑‑‑GA‑‑AAAAAAAAAAAAAAAA‑AATATAATTTGCATAATATAAAAAATTTTTTTTAAAATAATTATTAAGGATTAAATTAAAAAAACCAACATTTATAAAACTTGTTTTTTTTTTTAtattaat             >  2:4312448/1‑126 (MQ=255)
                                                                                                                          tattA‑TT‑‑‑T‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTAtattattat           <  1:3014549/125‑1 (MQ=255)
                                                                                                                            ttA‑TT‑‑‑T‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTAttt         <  1:593207/127‑1 (MQ=255)
                                                                                                                             tA‑TT‑‑‑GA‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTAttt         <  1:1002035/128‑1 (MQ=255)
                                                                                                                             tA‑TT‑‑‑GA‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGAATAATATAAAAAATTTTTTTTAAAATAAGTATTAAGTATTAAATTTAAAAAACAAATATTTATAAATATTGGTTTTTTTTTTTTATTATTAttt         >  1:3851133/1‑128 (MQ=255)
                                                                                                                               ttttatttttaaaaaaaaaaaaaaaT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTAtattatt             <  2:683861/118‑1 (MQ=255)
                                                                                                                                tt‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTc      >  1:1495048/1‑128 (MQ=255)
                                                                                                                                taattttaaaaaaaaaaaaaaaaaT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAGATCTTGGTTTTTTGTTTAtattatta            <  1:5852397/119‑1 (MQ=255)
                                                                                                                                   tatttaaaaaaaaaaaaaaaaT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTAttt         <  2:5121806/122‑1 (MQ=255)
                                                                                                                                       ttaaaaaaaaaaaaaaaT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCt     <  1:6021425/126‑1 (MQ=255)
                                                                                                                                         aaaaaaaaaaaaaaaT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCttt   <  2:1627572/128‑1 (MQ=255)
                                                                                                                                         aaaaaaaaaaaaaaaT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCttt   <  1:4080762/128‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                 
TTTACTTCTTTATGAGTTTCAACAAAAAGAGTAAGAAATGCTGAACCAAGTACAATGCTAAGTGAAGTTGATGAATAATAAAAGATTAAACCAAATACATTG‑TGTTTGGTTTTTTTATT‑T‑ACTA‑TT‑‑‑G‑‑‑AAAAAAAAAAAAAAAT‑AATATAATTTGCATACTATAAAAAATTGTTTTTCAAATAAGTATTCAGGAGTAAATTTAAAAAACCAAGAGTTATAAATCTTGGTTTTTTGTTTATATTATTATTTGTCTTTA  >  CP016816/34819‑35074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.