Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9120GT36.7% 1504.4 / inf 1171intergenic (+296/+162)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base G (206/514);  new base T (416/2);  total (655/516)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1263 total aligned reads displayed.

AAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203786‑204039
                                                                                                                                      |                                                                                                                                  
   aaataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGA‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTTTT‑aaa                                                                                                                               >  1:3887771/1‑128 (MQ=255)
      taaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTTGT‑taaaaa                                                                                                                            >  1:1972184/1‑127 (MQ=255)
      taaaaatTTTTAATTTAAATCCATTTTTAAAAAAGCCTATTTTTTAGGCTTTTTATTATACTTATCAAAATTACAACGCTTTCAAA‑TTGTA‑TTTTTTAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTGT‑aaaaa                                                                                                                             <  2:5110918/128‑1 (MQ=255)
       taaaatTTTTATTTTTAAGCCATTTGTAAAAAAGCTTTTGTTCTAGGGTTTTTATTATAATTATAAACATTACAAACCTTTCAAA‑TTGTA‑TTTTTTATGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATa                                                                                                                           <  1:3379118/127‑1 (MQ=255)
        aatatTTTTCAATTAAATCATATTGTAAATAAGAGTTTGTTCTAGGCTTTTTTATATAATAATCAACTTTACAATGCTTTCAAA‑TTGTT‑TTTTTTAGGC‑TGGT‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATa                                                                                                                           <  2:6205534/125‑1 (MQ=255)
          aatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATAATTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGA‑‑TT‑TT‑TTTTTTTTTTTTAT‑AAAAATaaa                                                                                                                         >  1:6329594/1‑128 (MQ=255)
           atTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGTT‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAATaaa                                                                                                                         >  2:800755/1‑128 (MQ=255)
            tttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAATaaaat                                                                                                                       >  1:757691/1‑127 (MQ=255)
            tttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATAAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAATtaaatt                                                                                                                      >  1:1174532/1‑126 (MQ=255)
            tttttAATTTAAATCCATTTTTAAAAAAGCCTATGTTCTATGGTTTTTTTTTTAATTATAAAAATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑Gt                                                                                                                     <  1:456589/128‑1 (MQ=255)
            tttttAATTTAAATACTTTTTTAATAAATACTTTTTTTTTTGCTTTTTTTTATAATTTTAAAAATTACAACGCTTTCAAA‑TTTTATTTTTTTGGGT‑TTT‑‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑g                                                                                                                      <  2:187593/128‑1 (MQ=255)
            attttTATTTAAATAAATTTTTAAAAAATACAATTTTCTATTGTTTTTATTATAATTATCAAAATTAAAAAGATTTAAAA‑TTTTT‑TTTTTTTGGC‑TTGTT‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATaaaa                                                                                                                        <  1:4181063/127‑1 (MQ=255)
              tttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTTTTAAAAAATAAAA‑TTa                                                                                                                    >  1:5926919/1‑128 (MQ=255)
                ttaTTTAAATCCATTTGTAAAAAATCCTATTTTCTAGGATTTTTTTTATAATTATTAACATTAAAACGATTTCAAA‑GTTTA‑TTTTTTAGGC‑TTT‑‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGa                                                                                                                 <  1:100803/126‑1 (MQ=255)
                   tttaaataaaTTTTTAAAAAAGAATATTTTATATTCTTTTTATTATAAATATAAAAATTAAAAAGCTTTAAAA‑TTTTA‑TTTTTTAGGC‑TTGTT‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGAt                                                                                                                <  1:1588658/119‑1 (MQ=255)
                   tttAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTTTT‑TTaaaaaaaaaataataat                                                                                                               >  1:5261463/1‑119 (MQ=255)
                       aatccATTTTTTAATAATCCTATGTTCTTGTATTTTTATTATACTTATAAAAATTAAAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGa                                                                                                           <  1:1410599/125‑1 (MQ=255)
                       aaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAATATTTTGAt                                                                                                          >  2:5872106/1‑128 (MQ=255)
                            aTTTGTAAAAAATCATATGTTATTGCTTTTTTTTTTTAATTATAAAAATAAAAACGCTTTAAAATGTTTT‑TTTTTTGGTT‑TTT‑‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAAc                                                                                                      <  2:6390568/128‑1 (MQ=255)
                                  aaaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTT‑T‑AAAAATAAAA‑GTAAAATTTTGATCAAACAAAACta                                                                                              >  2:1614151/1‑128 (MQ=255)
                                   aaaaaTTCTATTTTATATGTTTTTTATTATATTTATAAACATTACAACTCTTTAAAA‑TTGTA‑TTTTTTAGGCTTTT‑‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACt                                                                                               <  1:6144492/128‑1 (MQ=255)
                                   aaaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTG‑‑‑TT‑TT‑TTTTATTTTTTTTT‑AAAAATAAAA‑GTAAAATTTTGATAAACCAAAAcaa                                                                                              >  2:5974630/1‑126 (MQ=255)
                                    aaaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGTT‑TT‑TT‑TTTTTTTTTTTTTT‑TAAAAAAAAA‑TTAAGATTTGTTTAAACCAAAACt                                                                                               >  2:5726028/1‑128 (MQ=255)
                                     taaGCATATGTTTTAGGCTTTTTATTATACTTATCAAAATTACAACTGTTTCAAA‑TTGTA‑TTTTTTAGGA‑TTG‑‑‑‑T‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTatat                                                                                           <  2:2121662/127‑1 (MQ=255)
                                     aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAAAAAAA‑TTAATATTATGATAAAAAAAAACtaa                                                                                             >  2:6113704/1‑127 (MQ=255)
                                       aGCCTATGTTCTAGGCTTTTTATTATACTGATCACCATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATAAACCaatcatttag                                                                                           >  1:2109391/1‑120 (MQ=255)
                                        gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAAAGCTTTCAAA‑GTGTA‑TTTTTTAGGA‑TTGTT‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAAAAAAA‑TTAATATTTTGATAAAACaaaaattaat                                                                                           >  1:4810519/1‑122 (MQ=255)
                                          ctagaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGTT‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAATTAAA‑GTAATTTTTGGTTCAACAAAAAGTatatga                                                                                         >  1:3121411/9‑126 (MQ=255)
                                            attttttttgatttttATTATTATTATAAAAATTAAAAAGCTTTAAAA‑TTGTT‑TTTTTTAGGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATC‑aaaaa                                                                                    <  1:605638/117‑1 (MQ=255)
                                            aTGTTCTTGTGTTTTTATTTTAATTTTAAAAATTACAACGCTTTAAAA‑GTGTA‑TTTTTTAGGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATC‑aaaaa                                                                                    <  1:5050308/128‑1 (MQ=255)
                                             tGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTT‑A‑AAAAAAAAAA‑GTAATATTTGGTTAAAACAAAAATATATa‑aaaaaaa                                                                                  >  1:4684302/1‑128 (MQ=255)
                                             gaacatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTTT‑TAAAATAAAATATAATTTTTGGAACAAGCATAAGTATTTA‑aaaa                                                                                     >  2:5166796/6‑128 (MQ=255)
                                              gttatattatttttATTATAATTTTAAAAATTAAAACTATTTAAAA‑GTGTA‑TTTTTTATGC‑TT‑‑‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATC‑AAAAAAAt                                                                                 <  1:2441740/119‑1 (MQ=255)
                                              gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGTTTTGGATCAACCAAAAATATTTA‑aaaaaa                                                                                   >  1:5373278/1‑128 (MQ=255)
                                                 cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAAAAAAA‑TAAAAATTTGTATAAACAAAAAGAATAAA‑AAAAAAAtt                                                                                >  1:2972251/1‑128 (MQ=255)
                                                 cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTG‑‑‑TTGTT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAATATTTGGTTCAACCAAAACTATATC‑AAAAAAAtt                                                                                >  2:1446837/1‑128 (MQ=255)
                                                  tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGTT‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAAAAAAA‑TTAATATTTGGTAAAACAAAAAATATATA‑AAAAAAAtt                                                                                >  1:4058861/1‑128 (MQ=255)
                                                  tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAATAAAA‑ATAAAAATATTAACAAACAAAACAATAAA‑AAAAAAATTa                                                                               >  2:629169/1‑128 (MQ=255)
                                                     gtttttttttATAATTTTTAACATTACAATCTTTTTAAA‑TTTTA‑TTTTTTTTGT‑TTGTT‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATC‑AAAAAAATTaaa                                                                             <  1:5498034/126‑1 (MQ=255)
                                                       tttttATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAATAAAA‑TTAATATTTGGATCAACAAAAAATATATA‑AAAAAAATTaaaaaa                                                                          >  1:2585605/1‑128 (MQ=255)
                                                         tttATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTG‑‑‑TT‑TTATTTTTTTTTATTTT‑AAAAATAAAA‑GAAAAATTTTAAAAAAACAAAAATAATAC‑AAAAAAATTaaaaaaaa                                                                        >  1:5995704/1‑128 (MQ=255)
                                                            attatACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAAAAAAA‑TTAATATTTGTAAAAAACAAAAAAATATC‑AAAAAAATTaaaaaaattgtt                                                                    >  2:3464061/1‑123 (MQ=255)
                                                              tataCTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAATAAAA‑TTAATATTTTTATAAAAAAAAAAATTAAG‑AAAAAAATTaaaaaaaaatatt                                                                   >  1:5650333/1‑123 (MQ=255)
                                                                 aattATCAAAATTACAAAGATTTTAAA‑TTTTT‑TTTTTTTGGC‑TTG‑‑‑‑T‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATC‑AAAAAAATTAAAAAAAAtagtttagtt                                                              <  1:5191944/126‑1 (MQ=255)
                                                                 aCTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAAAAAAA‑TTAATATTTTGAAAAAACAAAAAATAATA‑AAAAAAATTAAAAAATAtatttttt                                                                >  1:3666871/1‑126 (MQ=255)
                                                                   ttATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAATAAAA‑TTAAGATTTTGATAAACCAAAAATTTATCAAAAAAAATTTAAAAAAAtattttatt                                                               >  1:6493025/1‑126 (MQ=255)
                                                                    ttaataaataaaaaCGTTTTAAAA‑TTGTT‑TTTTTTAGTT‑TTGTT‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATC‑AAAAAAATTAAAAAAAAtagtttagtt                                                              <  2:3374666/116‑1 (MQ=255)
                                                                    tATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAATAAAA‑TTAAGATTTTGATCAAACAAAAATTTAAA‑AAAAAAATTAAAAAAAATAGTTTATTTGa                                                            >  2:3696325/1‑128 (MQ=255)
                                                                       cAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGTT‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAATAAAA‑GTAATATTTGGTTAAAAAAAAAATTTATA‑AAAAAAATTAAAAAAAAtagtttaatttat                                                           >  1:1842400/1‑125 (MQ=255)
                                                                          cATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGTT‑TT‑TT‑TTTTTTTTTTTTTT‑TAAAAAAAAA‑GTAAAATTTGTTTCAACCAAAACTATAAA‑AAAAAAATTAAAAAAAAtaatttatttatttat                                                        >  2:4358765/1‑122 (MQ=255)
                                                                          cATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGTT‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAATAAAA‑TTTATATTTGTATAAACCAAAAAAATTTA‑AAAAAAATTAAAAAAAAatatttagtttttttt                                                        >  1:3768715/1‑122 (MQ=255)
                                                                           aTTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGTT‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAATAAAA‑TTAAGATTTGGATCAACCAAAACTAAATA‑AAAAAAATTAAAAAAAAtattttattttttttta                                                       >  1:6429349/1‑121 (MQ=255)
                                                                             tACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGTT‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAAAAAAA‑TTAAAATTTTTTAAAACCAAAAAATAAAA‑AAAAAAAAAAAAAAAAAAATTTTTGTTTAGTTTaaa                                                     >  1:1497454/1‑128 (MQ=255)
                                                                              aCAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑TTAAGATTTGGAACAACCAAAACTATATC‑AAAAAAATTAAAAAAAAAAGTTTATTTGATTTTCaaaac                                                  >  1:5877511/1‑126 (MQ=255)
                                                                               cAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGTT‑TT‑TT‑TTTTTTTTTTTTTT‑TAAAAAAAAA‑TTAAAATTTTGTTAAACCAAAACTATTTC‑AAAAAAATTAAAAAAAAtattttatttatatttaaaaa                                                   >  1:3508733/1‑117 (MQ=255)
                                                                                 aCGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGTTTTT‑TT‑TTTTTTTTTTTTTT‑AAAAAAAAAA‑TTAAAATTTTTAAAAAACAAAAATATAAA‑AAAAAAATTAAAAAAAATATTTTATTTAAATTTAAAAta                                                  >  1:904226/1‑127 (MQ=255)
                                                                                 aCGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGTT‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAAAAAAA‑TTAATATTTGGATAAACCAAAACAAAATC‑AAAAAAATTAAAAAAAAAATTTTTTTTTAGTTTAAAATca                                                 >  1:4373759/1‑127 (MQ=255)
                                                                                 aCGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAATAAAA‑TTAAAATTTTTATCAACCAAAAATATAAA‑AAAAAAATAAAAAAAAAAAAATTATTTTAGTTTCAAATCTg                                                >  1:6258174/1‑128 (MQ=255)
                                                                                   gCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAAAAAAA‑TTAAAATTTTGATAAAACAAAAAAATAAA‑AAAAAAATTAAAAAAAATATTTTATTTTAATTTAAAATATgaa                                              >  1:2219441/1‑126 (MQ=255)
                                                                                    cTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTT‑A‑AAAAAAAAAA‑TTAAGATTTTGATCAACCAAAACTATAAA‑AAAAAAATTAAAAAAAATATTTTAGTTGAGTATAAAAACTGAatat                                           >  1:5128605/1‑128 (MQ=255)
                                                                                      ttCAAA‑GTGTA‑TTTTTTAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑TTAAGATTTGGATCAACCAAAAAATTATC‑AAAAAAATATAAAAAAAAAGTTTAGTTGATTTTCAATTATGCatat                                           >  2:3833218/1‑128 (MQ=255)
                                                                                         aaa‑GTGTA‑TTTTTTAGGC‑TTGTT‑TT‑TT‑TTTTTTTTTTTTTT‑TAAAAAAAAA‑TTTATATTTGTATAAAAAAAAAATAATAA‑AAAAAAATTAAAAAAAATTTTTTATTTTAGTTTCAAAAGGGCatattt                                         >  2:6549327/1‑126 (MQ=255)
                                                                                           aaatttttttttttATTA‑TTT‑‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAg                                       <  2:1520970/120‑1 (MQ=255)
                                                                                           a‑GTGTA‑TTTTTTTGTT‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGt                                      <  2:696489/128‑1 (MQ=255)
                                                                                              tgtA‑TTTTTTAGGC‑TTGTTTTT‑TT‑TTTTTTTTTTTTTT‑AAAAATAAAA‑GTAAAATTTGGAAAAACCAAAAAAATAAA‑AAAAAAATTAAAAAAAATATTTTATTTTAATTTAAAATATGAAaatatatt                                      >  1:660896/1‑126 (MQ=255)
                                                                                              tgtA‑TTTTTTAGGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAAAAAAA‑ATAATATTTGTATAAAAAAAAAATTTTTA‑AAAAAAATTAAAAAAAATTGTTTTGTTGAGTTTAAAATGTGCatatattataaa                                   >  1:2755553/1‑122 (MQ=255)
                                                                                              gttatttttttGGTT‑TTT‑‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTAc                                    <  2:5261463/123‑1 (MQ=255)
                                                                                               gtA‑TTTTTTAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAATAAAA‑GTAAGATTTGGAACAACCAAAAATAAATA‑AAAAAAATTAAAAAAAAAATTTTTTTTGATTTTCAAATCTGCATATATATTACa                                   >  2:5563875/1‑128 (MQ=255)
                                                                                                   ttttttAGGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑TTAAGATTTGGATCAACCAAAAATTTATA‑AAAAAATTTAAAAAAAATATTTTAGTTTATTTTCAAATATTCATTTTTATTAaaaatt                               >  1:2859733/1‑126 (MQ=255)
                                                                                                     ttttAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTTT‑AAAAAAAAAA‑ATAAGATTTGGAACAACCAAAAAAAAAAA‑AAAAAAATAAAAAAAAAAATTTTATTTGATTTAAAAATATACAaatatataaaaaataa                              >  2:5443915/1‑118 (MQ=255)
                                                                                                       ttAGGC‑TTGT‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACAATATA‑AAAAAAATTAAAAAAAAAATTTTATTTTAGTTTAAAATATGCATAATTAGTACAAAGGAAt                            >  2:5630172/1‑128 (MQ=255)
                                                                                                             ttttttttt‑tt‑ttttttttttttGT‑AAAAATAAAA‑GTAAGATTTGGATCAACAAAAACTATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                         <  2:1174532/121‑1 (MQ=255)
                                                                                                             gcttgtttt‑tt‑tttttttttttttt‑AAAAATAAAA‑TTAAAATTTGGTACAACAAAAAATATAAA‑AAAAAAATTAAAAAAAATATTTTAGTTTAGTTTCAAATTAGCATATATATTAAAAAGGAAtttt                         >  2:4870406/8‑127 (MQ=255)
                                                                                                              ttgttttt‑tt‑ttttttttttttGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                        <  2:5785065/122‑1 (MQ=255)
                                                                                                                tttttt‑tt‑ttttttttttttGT‑AAAAATAATA‑GTAAGTTTTGGATTAAAAAAATCTATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGa                      <  2:4600226/124‑1 (MQ=255)
                                                                                                                 ttttt‑tt‑ttttttttttttGT‑AAAAATAAAA‑TTATGATTTGGATCAAAAAAAACTATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGAt                     <  2:4082404/125‑1 (MQ=255)
                                                                                                                  tttt‑tt‑ttttttttttttGT‑AAAAATAAAA‑GTATGATTTGGATAAACCAAAACTATATC‑ATAAAAATTAAAAAAAAAAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATa                    <  2:2795279/126‑1 (MQ=255)
                                                                                                                    ttgtt‑ttttttttttttGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                   <  1:1721941/125‑1 (MQ=255)
                                                                                                                    tt‑tt‑tttttttttttttt‑TAATATAAAA‑GTAATATTTGGATAAAACAAAAATATTTA‑AAAATAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGa                  <  2:2551420/128‑1 (MQ=255)
                                                                                                                    tt‑tt‑tttttttttttttt‑AAAAATAAAA‑TTAAGATTTGGAAAAACCAAAACTATAAA‑AAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAATCTGCTTATATAGTAAAAAGGAtttttttattta                  >  2:2371223/1‑120 (MQ=255)
                                                                                                                    tt‑tt‑ttttttttttttGT‑AAAAATAAAT‑GTTAGATTTGGATCAACCATAACTATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGa                  <  2:2043120/128‑1 (MQ=255)
                                                                                                                       tt‑ttttttttttttGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                <  1:5704808/128‑1 (MQ=255)
                                                                                                                        t‑tttttttttttttT‑AAAAATAAAA‑GTAAGATTTGGATAAACCAAAACTATTTA‑AAAAAAATTAAAAAAAATATTTTAGTTTATTTTAAAATATGCAAAAATTTTACAAAATAATTTATGATATaaaa               >  1:1634131/1‑128 (MQ=255)
                                                                                                                          ttttttttttttGT‑AAAAATAAAA‑GTAAGATTTTGATCAACCAAAACTATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  2:6029582/128‑1 (MQ=255)
                                                                                                                          ttttttttttttGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaa              <  2:4985125/128‑1 (MQ=255)
                                                                                                                             ttttttttttT‑AAAAATAAAA‑GTAAGATTCGGATCAACCAAAACTATTTA‑AAAAAAATTAAAAAAAATAGTTTAGTTTAGTTTCAAATCTGAATATATATTAAAAAGGTATTTATTATTTAAAAAAAt           >  1:4961822/1‑128 (MQ=255)
                                                                                                                              ttttttttGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATg          <  2:5357162/128‑1 (MQ=255)
                                                                                                                               ttttttttT‑AAAAATAAAA‑TTAAGATTTTTATCAAACAAAAATATAAA‑AAAAAAATTAAAAAAAATATTTTAATTGAGTTTCAAATAGGACTATATAGTAGAAACTAAATTAATTTAGaaaaaaaaga         >  2:3541578/1‑125 (MQ=255)
                                                                                                                               ttttttttT‑AAAAATAAAA‑TTAAAATTTTGATCAACCAAAAAAATATA‑AAAAAAATTAAAAAAAAAATTTTATTTGAGTTTCAAATATGAATAAATTTTAAAAATGAATTTATTATATaaaaaaaatg         >  2:2262268/1‑125 (MQ=255)
                                                                                                                                 ttttttT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAAATATATA‑AAAAAAATTAAAAAAAATATTTTATTTGATTTTCAAATCTGAATATATTGTAAAAATTAATTTATTATATAAAAAAATTGAt       >  1:1296337/1‑128 (MQ=255)
                                                                                                                                  tttttt‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt      <  2:1720382/128‑1 (MQ=255)
                                                                                                                                   ttttT‑AAAATTAAAA‑GTAAGATTTGGATCTTCAAAAACTATATT‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa     <  1:4280208/128‑1 (MQ=255)
                                                                                                                                   tttGT‑TATAATAATA‑TTATGTTTTGGATCAACCAAATCTATATA‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa     <  1:3263754/128‑1 (MQ=255)
                                                                                                                                   tttGT‑ATAAATTAAA‑GTAAGATTTTGTTTAACCTAAACTTTATA‑AAAATAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa     <  2:3122469/128‑1 (MQ=255)
                                                                                                                                   tttGT‑AAAAATATAA‑GTAAGATTTGGATCAACAAAAAATATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTa     <  1:2333875/128‑1 (MQ=255)
                                                                                                                                    ttGT‑ATAAATTAAA‑GTAAGATTTTGATAAAAAAAAACTATATT‑AAAAAAATTAAATAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat    <  2:4242917/128‑2 (MQ=255)
                                                                                                                                    ttGT‑AAAAATAAAA‑GTAAGATTTGTATAAAACAAAAATATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  2:1959434/128‑1 (MQ=255)
                                                                                                                                      gT‑AAATATAAAA‑GTAAGATTTGGATCAACAAAAACTATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATTTAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatca  <  1:543270/128‑4 (MQ=255)
                                                                                                                                      gT‑AAAAATAAAA‑GTAAGATTTGTATAAACCAAAACTATATA‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatca  <  2:5061531/128‑4 (MQ=255)
                                                                                                                                      gT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGtt  <  1:5782117/128‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                  
AAAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAA‑GTGTA‑TTTTTTAGGC‑TTG‑‑‑TT‑TT‑TTTTTTTTTTTTGT‑AAAAATAAAA‑GTAAGATTTGGATCAACCAAAACTATATC‑AAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203786‑204039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑