Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4870T.41.0% 585.0 / inf 641intergenic (+265/‑410)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (173/168);  new base . (58/179);  total (263/378)
Fisher's exact test for biased strand distribution p-value = 2.16e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.02e-10

Only 100 of 682 total aligned reads displayed.

TAAATAATAGAGTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACT  >  CP016816/202367‑202613
                                                                                                                         |                                                                                                                               
    taataGAGTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAA‑AAAAAAAAAACAATACC‑‑ATtaaaaattaaaaaa                                                                                                                   >  2:6078116/1‑128 (MQ=255)
       taGAGTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCAACTT‑‑‑AAAAATaaaaaaaaaa                                                                                                               >  1:3258140/1‑128 (MQ=255)
       taGAGTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaa                                                                                                                >  2:5416959/1‑128 (MQ=255)
       taGAGTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑‑TAAAAAATtaaaaaaaaa                                                                                                               >  2:1996230/1‑128 (MQ=255)
       taGAGTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATACCC‑‑TTAAAAATTaaaaaaaaa                                                                                                                >  2:5021172/1‑128 (MQ=255)
        ttatttAACGTTAATT‑AAATATCACTAAACTTAATAAATTTTATAATGTTGATCCTCGGTTTCTATTTTTTTTTTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaa                                                                                                               <  2:3196434/124‑1 (MQ=255)
          agTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTATATTTTTTTATCTTCACAAAT‑AAAAAAAAACAATCAAC‑‑TTAAAAATTaaaaaaaaaaaa                                                                                                             >  1:2038790/1‑128 (MQ=255)
           gTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AAAAATaaaaaaaaaaaaaa                                                                                                           >  1:6012243/1‑128 (MQ=255)
           gTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaa                                                                                                            >  2:4954533/1‑128 (MQ=255)
           gTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaa                                                                                                            >  2:6348724/1‑128 (MQ=255)
            ttAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTAAAAAATTAAATCATCGTGATCTATTTTTAAATATTATTATCTTCAAAAATAAAAAAAAAA‑AATAAC‑‑AATAAAAAATaaaaaaaaaaaaaa                                                                                                           >  2:1198286/1‑128 (MQ=255)
             tAATGTTAATTAAAAAAACA‑TAAAATTATAAATTTTTATAATTTTTATTCTCGTGTTATATTTTTTTATTTGTTTATATTCAAAAATAAAAAAAAAA‑AATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                          <  2:6255277/128‑1 (MQ=255)
             tAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCC‑‑‑ATAAAAAATtaaaaaaaaaaaaaa                                                                                                          >  2:5097070/1‑128 (MQ=255)
             tAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCAC‑‑TTAAAAATTaaaaaaaaaaaaaaa                                                                                                          >  1:1599810/1‑128 (MQ=255)
              aattttaattaaAATAACA‑AAAACATAATAATTTTTATAATTTATTATCTCGTGATTTTTTTTTTTTTTTTTTTATTTTAACAAATAAAAAAAAAA‑AATACCC‑‑TTAAAAATTaaaaaaaaaaaaaaaa                                                                                                         <  2:1606541/124‑1 (MQ=255)
              aaGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATACCC‑‑TTAAAAAATaaaaaaaaaaaaaaaa                                                                                                         >  2:1325188/1‑128 (MQ=255)
              aaGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAT‑‑CCAATTAAAAATTaaaaaaaaaaaaaaaa                                                                                                         >  1:761184/1‑128 (MQ=255)
              aaGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAA‑AAAAAAAAAACAATCCCCTTAaaaaaaaaaaaaaaaaaaaaaa                                                                                                           >  2:1683567/1‑128 (MQ=255)
              aaGGTTAATTAAAATAACA‑TAAACTTAATAATTATTATAATGTAGATAATATTGATCTATTTTTTTATTTGTTTATATTAACAAATAAAAAAAAAA‑AAT‑‑AAAATTAAAAATTaaaaaaaaaaaaaaaa                                                                                                         >  2:2455295/1‑128 (MQ=255)
               agattaattaaAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCAAC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                        >  2:3654928/4‑128 (MQ=255)
               aGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                        >  2:6598191/1‑128 (MQ=255)
               aGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaa                                                                                                        >  2:834459/1‑128 (MQ=255)
                ggTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTATTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                                       >  1:45737/1‑128 (MQ=255)
                ggTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCC‑‑ATTAAAAATTaaaaaaaaaaaaaaaaaa                                                                                                       >  2:758814/1‑128 (MQ=255)
                  ttaattaaAATACCA‑TAAACTTAATAATTCTTATAATTTAGATCAACTTTATATAATTATATATAAAAAAATATTAAAAAATAAAAAAAAAA‑AAT‑‑‑CAAAAAAAAAATaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:26926/1‑128 (MQ=255)
                   taattaaAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATACCC‑‑ATAAAAATTaaaaaaaaaaaaaaaaaaaaa                                                                                                    >  2:5271334/1‑128 (MQ=255)
                   taattaaAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTAATTTTTTATTTATATATATTCACAAAT‑AAAAAAAAACAAAAAACTTAAAAATaaaaaaaaaaaaaaaaaaaaaa                                                                                                      >  2:4580865/1‑128 (MQ=255)
                    aattaaAATACCA‑TAAACTTAATAATTCTTATAATGTAGATACTATTTATCTATTTTTTTAATTTTTTATCTTCACAAAT‑AAAAAAAAACAATACACTTAAAAATAaaaaaaaaaaaaaaaaaaaaaa                                                                                                     >  1:2490181/1‑128 (MQ=255)
                     attaaAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAAACCAC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaa                                                                                                  >  2:2196970/1‑126 (MQ=255)
                      ttaaAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                 >  2:5882116/1‑125 (MQ=255)
                       taaAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                                >  2:5466765/1‑124 (MQ=255)
                       taaAATACCA‑TAAACTTAAAAAATATTAAAATTTAGAACCTCGTGATCTTTTTTTTTATTTGTTTATATTAACAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTaa‑a                                                                                              <  1:6316605/128‑1 (MQ=255)
                       taaAAAACAA‑TAAA‑TTAAAAATTTTTATAATTTATATAATTTTTATATATTATTTTTTTTTTTTAAATT‑AAAAAAAAAAAAAAAAAAAACCCCAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTaa‑aa                                                                                             <  1:670057/128‑1 (MQ=255)
                        aaaataaaa‑taaaatTAAATATTATTATAATTTATAACCTTGTTATCTATTTTTTTATTTTTTTATCTTAACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaactaaaaac                                                                                               <  1:1883182/128‑9 (MQ=255)
                        aaaaTACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTAATTTATCTTCACATAT‑AAAAAAAAACAAAACCC‑‑TTAAAAATTaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  2:2946053/1‑123 (MQ=255)
                        aaaaTACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTATTTATCTATTTTTTTATTTTTTTATATTCACAAATAAAAAAAAAA‑AATAACC‑‑TTAAAAAATaaaaaaaaaaaaaaaaaaaaaaaaaa                                                                                               >  1:1003267/1‑123 (MQ=255)
                         aaaTACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATTTGTTTATCTTAACAAAT‑AAAAAAAAACAAAAACC‑‑TTAAAAATTAaaaaaaaaaaaaaaaaaaaaaaaa‑aa                                                                                             >  2:3845231/1‑128 (MQ=255)
                         aaaTACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTACACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAaaaaaaaaaaaaaaaaaaaaaaaa‑aa                                                                                             >  1:4957368/1‑128 (MQ=255)
                           attacA‑TAAAATTAAAATATCTTATAATGTATATACTCTTTATCTATTATTTTATTTTTTTATCTTAAAAAATAAAAAAAAAA‑AAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAA‑aaaca                                                                                          <  1:3025391/124‑1 (MQ=255)
                            tataa‑TAAAATTAATAATTATTATAATTTATATCCTTGTTTTTTATTTTTTTTTTTTTTTATATTAAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAA‑aaacaa                                                                                         <  2:1819405/124‑1 (MQ=255)
                             taaataaaaaTTAATTATTATTATAATTTATATAATTGTTATAATTTTTTTTTTTTTTTTATATTAAAAAAAAAAAAAAAAAAAAACCC‑‑TTT‑AAAATTAAAAAAAAAAAAAAAAAAAAACTAA‑aaaca                                                                                          <  1:6436430/122‑1 (MQ=255)
                               cA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACaaa‑aaaaaaaaa                                                                                      >  2:5724598/1‑126 (MQ=255)
                                a‑TAAACTTAAAAATTCTTAAAATTCTCATCCCCGTTAACTATTTTTTTATTTGTTTATCTACCCAAA‑AAAAAAAAAACAATCCCCTT‑‑‑AAAAAT‑‑TAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTa                                                                                   <  1:3680098/128‑1 (MQ=255)
                                   aaaaTTTATAATTATTTTAATTTATTTCATCTTTTTTTATTTTTTTTTTTGTTTTTTTTAAAAAATAAAAAAAAAA‑AAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTa                                                                                   <  2:5346603/128‑1 (MQ=255)
                                   aaaaTTAATAATTATTATAATTTAGTACATCGTTATCTATTTTTTTATTTGTTTATATT‑AAAAAAAAAAAAAAAAAAATACCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTAt                                                                                  <  2:5325973/128‑1 (MQ=255)
                                    aaCTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAAAAACaaacaaaatat                                                                                    >  1:5762411/1‑124 (MQ=255)
                                      tttAAAAATTTTTATAATTTATATCCTAGGTATAATTTTTTTTATTTTTTTATATTCACAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTc                                                                               <  2:4302651/127‑1 (MQ=255)
                                       taaatattTTTTAAAATTTATTTCATCTTTATATATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTAttt                                                                                <  1:61431/126‑1 (MQ=255)
                                          aaaatTCTAAAAATTTATATCATCTTGATATATTTTTTTATTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATCCCC‑‑TTAAAAAA‑AAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTa                                                                            <  1:527213/126‑1 (MQ=255)
                                             attattATAATTTATATAATCTTTATATATTTTTTTATTTGTTTTTCTT‑AAAAAAAAAAAAAAAAAAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAAt                                                                        <  1:4485262/128‑1 (MQ=255)
                                             atTCTTATAAATTATATCATCTTTATCTATTTTTTTAATTTTTTATATTCAAAAATAAAAAAAAAA‑AAACCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTaaa                                                                          <  1:5429420/128‑1 (MQ=255)
                                               tcatataATTTAGATCCTCTGTATATATTTTTTTATTTTTTTAAATT‑AAAAAAAAAAAAAAAACAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAAtt                                                                       <  1:5827232/125‑1 (MQ=255)
                                                 ttttaATGTACATCCTCGTGATATTTTTTTTTAATTGTTTATATTCACAAA‑AAAAAAAAAACAATCCCC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTccc                                                                    <  1:3355733/125‑1 (MQ=255)
                                                  tataATGTATATACTCGTTATATATTTTTTTATTTGTTTATATTAACAAA‑AAAAAAAAAAAAAACCCCAT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTccc                                                                    <  1:6245234/128‑1 (MQ=255)
                                                         tacaaactattGATATATTTTTTTATTTTTTTATCTTAACAAATAAAAAAAAAA‑AAACCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATtata                                                             <  1:1765303/118‑1 (MQ=255)
                                                           tatacTCGTTATTTATTTTTTTTATTTTTAATCTTAAAAAATAAAAAAAAAAAAACCCCC‑‑‑TAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATAcc                                                           <  2:4092398/124‑1 (MQ=255)
                                                           gATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑AAA‑AAACAAAATATATTTATTAAAATTcaaaattaaaaa                                                           >  1:5589538/1‑117 (MQ=255)
                                                            attctctttatttATTTTTTTTTTTTTTTATATT‑AAAAAAAAAAAAAAAAAAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                          <  1:2413787/116‑1 (MQ=255)
                                                             tcctatttatttATTTTTTTTTTTTTTTATATTTAAAAAAAAAAAAAAAAAAAACCC‑‑‑TT‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACcac                                                         <  2:6221679/117‑1 (MQ=255)
                                                             accTAGTTATATATTTTTTT‑TATTTTTATAATTAAAAAAAAAAAAAAAAAAAACCC‑‑ATTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACca                                                          <  2:305987/127‑1 (MQ=255)
                                                               atatttatatatttttttattttttTATATTAAAAAATAAAAAAAAAA‑AATCCCC‑‑TTAAAAAAT‑‑AAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                      <  1:3124613/119‑1 (MQ=255)
                                                                tttttttttatttttttattttttTATATTAACAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAATAAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                      <  1:5508246/120‑1 (MQ=255)
                                                                ttgttatttatttttttattttttTATCTTCACAAA‑AAAAAAAAAAAAATCCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattt                                                     <  2:5492680/120‑1 (MQ=255)
                                                                tCGTGATCTATTTTTTTATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACAAA‑AAACAACAAATATTTATATAAATTCCAAATTAAAAcacagt                                                      >  2:6139150/1‑126 (MQ=255)
                                                                  gttatatATTTTTTTAATTTTTTAAATTAAAAAATAAAAAAAAAAAAAACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatt                                                      <  1:1331907/122‑1 (MQ=255)
                                                                  ggtatatatttttttattttttTATATTTA‑AAAAAAAAAAAAAAAAATCCCATT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                    <  2:5236276/122‑1 (MQ=255)
                                                                  ctGATCTATTTTTTTATTTTTTTTTATTAAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACatttt                                                    <  1:378186/127‑1 (MQ=255)
                                                                     atatttttttttATTTGTTTA‑ATTAAAAAAAAAAAAAAAAAAAAAACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatt                                                 <  2:5662517/123‑1 (MQ=255)
                                                                       taaTTTTTTTATTTGTTTAAATT‑AAAAAAAAAAAAAAAACAAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTAttttt                                              <  1:4422611/126‑1 (MQ=255)
                                                                       attttttttttttttttTATTTTTAAAAAT‑AAAAAAAAACAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                               <  1:6078116/125‑1 (MQ=255)
                                                                        tATTTTTTTTTTTTTTTTTATT‑AAAAAAAAAAAAAAAAAAATACC‑‑ATTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAAATCCCTAATATACCACattttatttt                                               <  2:3563099/128‑1 (MQ=255)
                                                                        aaTTTTTTTAATTTTTTAAAATAAAAAAAAAAAAAAAAAAAAACCC‑‑‑ATAAAAAATAAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACattttatttt                                               <  1:6533974/127‑1 (MQ=255)
                                                                         ttttttttATTTTTTTTTAATAAAAAAAAAAAAAAAAAAAAACCC‑‑‑TT‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTa                                             <  1:5017227/127‑1 (MQ=255)
                                                                         atttttttatttttttATATTAAAAAAT‑AAAAAAAAACAATCACCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                            <  1:4713289/128‑1 (MQ=255)
                                                                          tttttttatttttttaTATTAACAAATAAAAAAAAAA‑AATACCCTT‑‑‑AAAAATAAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaa                                            <  1:427011/128‑1 (MQ=255)
                                                                           ttttttttttttttATTTTAAAAAATAAAAAAAAAAAAAACCC‑‑‑TTCAACATTAATAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTCTTATACCACATTTTATTTTTaa                                            <  1:3904834/128‑1 (MQ=255)
                                                                           ttttttATTTTTTTTTCTTCCCAAA‑AAAAAAAAAAAAATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTaaa                                           <  2:3433574/128‑1 (MQ=255)
                                                                           ttttttATTTGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTATAAATTAAAAAAAAAATAAAATAAACA‑TAA‑ATACAAAACTGATTTGTTAAATATACGAATTATACCAAaatttaatttataa                                           >  1:5661545/1‑124 (MQ=255)
                                                                              tttATTTTTTTTTATT‑AAAAAAAAAAAAAAAAAAATAAAC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATa                                        <  1:3542851/128‑1 (MQ=255)
                                                                               ttATTTTTTTATATTAAAAAATAAAAAAAAAA‑AATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATaa                                       <  1:1463743/128‑1 (MQ=255)
                                                                                   ttttttATATTAAAAAATAAAAAAAAAA‑AATACCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATATCACATTTTATTTTTAAAATAAGata                                   <  1:4113760/125‑1 (MQ=255)
                                                                                    tGTTTATCTTCACAAAT‑AAAAAAAAACAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑AAA‑AAACAAACTATATTTATAAAAAATACATATTAAACCAATTTTTTTTTTTAAAATAatatat                                  >  2:5798120/1‑128 (MQ=255)
                                                                                     tttttaattaacaAAT‑AAAAAAAAACAATTCCCATT‑‑AAAAAT‑AAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                 <  1:5355512/118‑1 (MQ=255)
                                                                                      ttttatattaaaaaaaaaaaaaaaaaaATACCC‑‑ATAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATAtt                                 <  1:521521/117‑1 (MQ=255)
                                                                                        ttaataaaaaaaaaaaaaaaaaaaaATTCCC‑‑ATAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGa                               <  1:2322229/119‑1 (MQ=255)
                                                                                        tatatttaaaaaaaaaaaaaaaaaaATCCCATT‑‑‑AAAAAT‑AAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGAc                              <  1:5085059/119‑1 (MQ=255)
                                                                                         tatatttaaaaaaaaaaaaaaaaaATTCCCAT‑‑‑AAAAAT‑AAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACa                             <  1:1667056/120‑1 (MQ=255)
                                                                                            ataaaaaaTAAAAAAAAAA‑AATACAC‑‑TTATAAATTATAAAAAAAAAAAAAAAAAAACTAA‑TTACAAAATATATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACata                           <  1:2627758/123‑1 (MQ=255)
                                                                                               acaAATAAAAAAAAAA‑AAACCCCTT‑‑‑AAAAAT‑TAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatata                      <  1:3462560/128‑1 (MQ=255)
                                                                                                caAATAAAAAAAAAAAAAACCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACataata                        <  1:2164567/128‑1 (MQ=255)
                                                                                                aaaaaaaaaaaaaaaaaATACCC‑‑ATAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatat                       <  2:2317504/127‑1 (MQ=255)
                                                                                                   aataaaaaaaaaCAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑AAA‑AAACAAACAATATTTATTAAAATTCCCTATTATACCACATTTTATTTTTAAAAAAATATATTGAAATAatatata                    >  1:6391796/4‑128 (MQ=255)
                                                                                                     taaaaaaaaaaaaTACAC‑‑TTAAAAAAT‑AAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATc                  <  1:825953/127‑1 (MQ=255)
                                                                                                     taaaaaaaaaCAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACAAA‑AAAAAAACACAATTTCTTAAAAATACCAATTAAACCACAATTTATTTTAAAAATAAGATATTAAAATAatatatata                  >  1:5932381/2‑127 (MQ=255)
                                                                                                     aaaaaaaaaaaaATACC‑‑ATTAAAAATAAAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAatatatat                   <  1:2824503/128‑1 (MQ=255)
                                                                                                          aaaaaCAATCCCC‑‑TTAAAAATTAAAAAAAAAAAAAAAAAAAAA‑AAA‑AAACAAACAATATTTATTAAAATTCAAATTTATAACAAATTTTATTTTTAAAAAAATAAATTTAAaaaataattataaatta             >  2:6480724/1‑117 (MQ=255)
                                                                                                            aaaCAATCCCCTT‑‑‑AAAAATTAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAAAAATATTTCTAAAAATTCACTAAAAAACCAAATTTTAATTTTAAAATAAAATATTTACAAAaaatatataaaaaaaa           >  1:396758/1‑120 (MQ=255)
                                                                                                                aaaatcacattAAAAAATAAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAatatat          <  1:5398661/119‑1 (MQ=255)
                                                                                                                   caccccttATAAATTAAAAAATAAAAAAAAAAAAAACTAA‑ACACAAACTCTATTTCTTATAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAAtatatata       <  2:6022799/122‑1 (MQ=255)
                                                                                                                       ccttAAAAAATAAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATAc   <  2:5553998/126‑1 (MQ=255)
                                                                                                                         |                                                                                                                               
TAAATAATAGAGTTAAGGTTAATTAAAATACCA‑TAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCACAAATAAAAAAAAAACAATCCCCTTTTAAAAAATAAAAAAAAAAAAAAAAAAAAACTAA‑AAACAAACTCTATTTCTTAAAATTCCCTATTATACCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATATAATACT  >  CP016816/202367‑202613

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑