mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_KO_pgi | 4,294,494 | 0 | C | T | 32.2% | 412.8 / 261.6 | 318 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_KO_pgi | 4,469,392 | 0 | G | T | 20.3% | 579.3 / 136.2 | 233 | intergenic (‑45/+28) | ridA/pyrI | enamine/imine deaminase, reaction intermediate detoxification/aspartate carbamoyltransferase, regulatory subunit |
| Marginal new junction evidence (lowest skew 10 of 1563 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_KO_pgi | = 225895 | NA (NA) | 97 (0.520) | 23/182 | 12.9 | NA | noncoding (137/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_KO_pgi | = 225899 | NA (NA) | noncoding (141/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_KO_pgi | = 228744 | 79 (0.390) | 119 (0.630) | 23/184 | 13.1 | 61.6% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_KO_pgi | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_KO_pgi | = 3944978 | NA (NA) | 84 (0.440) | 21/184 | 13.9 | 79.6% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_KO_pgi | = 4038811 | 23 (0.110) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_KO_pgi | 2727891 = | NA (NA) | 84 (0.440) | 21/184 | 13.9 | NA | noncoding (1294/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_KO_pgi | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_KO_pgi | 2726200 = | NA (NA) | 117 (0.620) | 21/184 | 13.9 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913_3_KO_pgi | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_KO_pgi | = 227052 | 54 (0.270) | 84 (0.440) | 21/184 | 13.9 | 62.4% | noncoding (1294/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_KO_pgi | 2727910 = | NA (NA) | noncoding (1275/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon | |||||
| * | ? | NC_000913_3_KO_pgi | 624576 = | 198 (0.980) | 21 (0.160) +35 bp |
10/126 | 14.4 | 13.6% | intergenic (‑66/‑309) | fepB/entC | ferrienterobactin ABC transporter periplasmic binding protein/isochorismate synthase 1 |
| ? | NC_000913_3_KO_pgi | = 3046145 | 221 (1.100) | intergenic (‑244/+23) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex | |||||
| * | ? | NC_000913_3_KO_pgi | = 3046145 | 221 (1.100) | 18 (0.140) +35 bp |
9/126 | 15.0 | 12.6% | intergenic (‑244/+23) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase/glycine decarboxylase, PLP‑dependent, subunit P of glycine cleavage complex |
| ? | NC_000913_3_KO_pgi | = 3504895 | 170 (0.840) | intergenic (+112/+40) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein | |||||
| * | ? | NC_000913_3_KO_pgi | 225154 = | NA (NA) | 70 (0.370) | 19/186 | 15.0 | NA | noncoding (1384/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_KO_pgi | 225176 = | NA (NA) | noncoding (1406/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_KO_pgi | 224059 = | NA (NA) | 75 (0.400) | 18/182 | 15.1 | NA | noncoding (289/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_KO_pgi | 224082 = | NA (NA) | noncoding (312/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||