mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.31.0 revision 69e7c3c0fa11
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 20,023 | 2 bp→TA | intergenic (‑744/‑392) | JCVSYN2_00065 ← / → JCVSYN2_00070 | hypothetical protein/tetracycline resistance ribosomal protection protein Tet(M) |
| RA | 32,707 | A→T | I1067F (ATT→TTT) | JCVSYN2_00105 → | ABC transporter permease |
| RA | 165,218 | A→T | intergenic (+182/‑360) | JCVSYN2_00665 → / → JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| RA | 165,222 | G→A | intergenic (+186/‑356) | JCVSYN2_00665 → / → JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| RA | 245,376 | A→T | K1669Y (AAA→TAT) | JCVSYN2_01035 → | ABC transporter permease |
| RA | 245,378 | A→T | K1669Y (AAA→TAT) | JCVSYN2_01035 → | ABC transporter permease |
| RA | 245,380 | A→T | Y1670F (TAT→TTT) | JCVSYN2_01035 → | ABC transporter permease |
| RA | 254,950 | C→T | S457L (TCA→TTA) | JCVSYN2_01075 → | RNA polymerase subunit sigma |
| RA | 281,616 | C→T | Q100* (CAA→TAA) | JCVSYN2_01185 → | DNA‑binding protein |
| RA | 396,431 | G→A | intergenic (‑47/+83) | JCVSYN2_01730 ← / ← JCVSYN2_01735 | 50S ribosomal protein L13/ABC transporter permease |
| RA | 420,157 | 2 bp→TT | intergenic (‑440/+402) | JCVSYN2_01895 ← / ← JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| RA | 420,163 | 2 bp→TT | intergenic (‑446/+396) | JCVSYN2_01895 ← / ← JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| RA | 478,738 | C→A | G301V (GGT→GTT) | JCVSYN2_02210 ← | DNA‑directed RNA polymerase subunit beta' |
| RA | 484,791 | T→A | intergenic (‑100/+71) | JCVSYN2_02220 ← / ← JCVSYN2_02225 | hypothetical protein/50S ribosomal protein L7/L12 |
| RA | 484,793 | A→T | intergenic (‑102/+69) | JCVSYN2_02220 ← / ← JCVSYN2_02225 | hypothetical protein/50S ribosomal protein L7/L12 |
| RA | 484,795 | A→T | intergenic (‑104/+67) | JCVSYN2_02220 ← / ← JCVSYN2_02225 | hypothetical protein/50S ribosomal protein L7/L12 |
| RA | 484,801 | A→G | intergenic (‑110/+61) | JCVSYN2_02220 ← / ← JCVSYN2_02225 | hypothetical protein/50S ribosomal protein L7/L12 |
| RA | 516,354 | A→T | intergenic (+185/+321) | JCVSYN2_02375 → / ← JCVSYN2_02380 | antitermination protein NusG/hypothetical protein |
| RA | 516,356 | G→A | intergenic (+187/+319) | JCVSYN2_02375 → / ← JCVSYN2_02380 | antitermination protein NusG/hypothetical protein |
| RA | 516,362 | T→C | intergenic (+193/+313) | JCVSYN2_02375 → / ← JCVSYN2_02380 | antitermination protein NusG/hypothetical protein |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP016816 | 311153 = | 359 (0.140) | 1169 (0.550) | 197/208 | 0.9 | 79.7% | intergenic (‑76/‑238) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 |
| ? | CP016816 | = 311148 | 298 (0.140) | intergenic (‑71/‑243) | JCVSYN2_01300/JCVSYN2_01305 | hypothetical protein/30S ribosomal protein S21 | |||||