mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_vch_tpiA | 4,296,090 | 0 | C | T | 25.0% | 155.2 / 56.7 | 101 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_vch_tpiA | 349605 = | NA (NA) | 8 (0.140) | 6/264 | 7.2 | NA | noncoding (1/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913_3_vch_tpiA | 349637 = | NA (NA) | noncoding (33/365 nt) | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP25 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913_3_vch_tpiA | = 225281 | NA (NA) | 6 (0.110) | 6/268 | 7.3 | NA | noncoding (225281/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 225293 | NA (NA) | noncoding (225293/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 4274760 = | 65 (1.100) | 5 (0.090) | 5/258 | 7.6 | 7.5% | noncoding (4274760/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 4274785 = | 63 (1.150) | noncoding (4274785/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | 3993706 = | 45 (0.760) | 6 (0.110) | 5/264 | 7.7 | 12.0% | noncoding (3993706/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | 3993732 = | 45 (0.800) | noncoding (3993732/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 2904026 | 99 (1.680) | 5 (0.090) | 5/264 | 7.7 | 5.0% | noncoding (2904026/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 2904030 | 96 (1.720) | noncoding (2904030/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 339818 | 90 (1.530) | 5 (0.090) | 5/264 | 7.7 | 6.0% | noncoding (62/358 nt) | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913_3_vch_tpiA | = 339922 | 72 (1.290) | noncoding (166/358 nt) | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913_3_vch_tpiA | = 339818 | 90 (1.530) | 5 (0.090) | 5/264 | 7.7 | 5.5% | noncoding (62/358 nt) | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | NC_000913_3_vch_tpiA | = 339829 | 85 (1.520) | noncoding (73/358 nt) | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||
| * | ? | NC_000913_3_vch_tpiA | = 4035360 | NA (NA) | 5 (0.090) | 5/266 | 7.8 | 100% | noncoding (4035360/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 4035384 | 0 (0.000) | noncoding (4035384/4641682 nt) | repeat_region | repeat region | |||||
| * | ? | NC_000913_3_vch_tpiA | = 3252144 | NA (NA) | 5 (0.090) | 5/266 | 7.8 | NA | noncoding (80/98 nt) | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site |
| ? | NC_000913_3_vch_tpiA | = 3252155 | NA (NA) | noncoding (91/98 nt) | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site | |||||
| * | ? | NC_000913_3_vch_tpiA | 2731304 = | 37 (0.630) | 5 (0.090) | 5/266 | 7.8 | 12.4% | noncoding (2731304/4641682 nt) | repeat_region | repeat region |
| ? | NC_000913_3_vch_tpiA | = 4035360 | NA (NA) | noncoding (4035360/4641682 nt) | repeat_region | repeat region | |||||