New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 339818	90 (1.530)	5 (0.090)	5/264	7.7	6.0%	noncoding (62/358 nt)	REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences
	?	NC_000913_3_vch_tpiA	= 339922	72 (1.290)					noncoding (166/358 nt)	REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCC  >  NC_000913_3_vch_tpiA/339776‑340066                                                                                                                                                   |                                                                                                                                                 ccTTATCCGGCCTACGAATGGCGCAAGAATATGACTTCCGGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCGGTGGGCCTGGTAAGGGTAGCGCAt                                                                                                                                                >  2:227703/1‑149 (MQ=14)   ttATCCGGCCTACGTATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCa                                                                                                                                              <  1:266401/149‑1 (MQ=255)        cGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt                                                                                                                                         >  2:51244/1‑149 (MQ=255)          gCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAttt                                                                                                                                       <  1:932265/149‑1 (MQ=255)              aCGACTGGCGCAAGAATCTGTAGGCTTGATCAGCGTAGCGCATCAGGCATCTGTCACCATTGCCGGATGCGGCGTGAACGACTTCTGCGGCTTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGcca                                                                                                                                   <  1:874710/149‑1 (MQ=14)                 aaTGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCAGCAGGCATTTGccgcca                                                                                                                                >  1:356827/1‑149 (MQ=255)                       gcAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCCCACCAGCCATTTGTCGCCACTGCCg                                                                                                                          >  2:1026858/1‑149 (MQ=11)                        cAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCACATCAGGCATTTGCCACCACTGCCgg                                                                                                                         >  1:1019631/1‑149 (MQ=255)                                    ggCCTGATAAGCGTCGCGCATCCGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCGTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCCCTGCCGGATGCGGCGTGGa                                                                                                             <  1:936908/149‑1 (MQ=255)                                    ggCCTGATAAGCGTAGCGCATCCGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGACCAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGa                                                                                                             <  2:175539/149‑1 (MQ=255)                                    ggCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGa                                                                                                             <  2:1019631/149‑1 (MQ=255)                                     gCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGAc                                                                                                            >  1:432827/1‑149 (MQ=255)                                      ccTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCCCCACTGCCGGCTGCGGCGGGGGCg                                                                                                           >  1:340700/1‑149 (MQ=255)                                      ccTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACg                                                                                                           >  1:788568/1‑149 (MQ=255)                                       cTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGc                                                                                                          >  1:628624/1‑149 (MQ=255)                                        tGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGcc                                                                                                         >  1:507251/1‑149 (MQ=255)                                        tGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGcc                                                                                                         <  2:511191/149‑1 (MQ=255)                                         gATAAGCGTAGCGCATCAGGCATTTGTCACCATTGGCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTATTGCGCGAGAATCTTTAGGCCTGATAAGCGTAGCCCACCGGGCGTTTGCCACCACTGCCGGATGCGGCGCGGACGCCt                                                                                                        >  2:621346/1‑149 (MQ=14)                                         ctaaaGGGTGGCGCATCCGGCAGTCGTCAGCAGTGCCGGATGGGGCGGGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATCTGCGACCACTGCCGGATGCGGCGTGGACGCCt                                                                                                        <  2:766724/146‑1 (MQ=14)                                                gTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCgg                                                                                                 >  1:614595/1‑149 (MQ=255)                                                gTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCgg                                                                                                 <  2:267154/149‑1 (MQ=255)                                                    cgcATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTa                                                                                             <  2:628624/149‑1 (MQ=255)                                                        tCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAg                                                                                         >  1:1006065/1‑149 (MQ=255)                                                          aGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTg                                                                                       <  1:982634/149‑1 (MQ=255)                                                           ggCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAg                                                                                         >  1:2019/1‑146 (MQ=255)                                                           ggCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAg                                                                                         <  2:2019/146‑1 (MQ=255)                                                           ggCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTgg                                                                                      >  2:535267/1‑149 (MQ=255)                                                           ggCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTgg                                                                                      <  1:494319/149‑1 (MQ=255)                                                              aTTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGgcgc                                                                                   <  2:432827/149‑1 (MQ=255)                                                              aTTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGgcgc                                                                                   <  2:507251/149‑1 (MQ=255)                                                                ttGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGGGGACGCCTTATCCGGCCTGCGAGTGGCGCga                                                                                 >  1:267145/1‑149 (MQ=255)                                                                     aCCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAAtt                                                                            >  1:437938/1‑148 (MQ=255)                                                                     aCCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATc                                                                            >  1:437937/1‑149 (MQ=255)                                                                        aTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGGCGGAATCTGt                                                                         >  2:46815/1‑149 (MQ=255)                                                                        aTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGt                                                                         <  2:614595/149‑1 (MQ=255)                                                                        aTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGt                                                                         <  2:788568/149‑1 (MQ=255)                                                                         ttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATGTGTa                                                                        >  2:535727/1‑149 (MQ=255)                                                                         ttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTa                                                                        <  1:739427/149‑1 (MQ=255)                                                                                   cggcgTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATgcg                                                                                                                    >  1:358416/1‑95 (MQ=39)                                                                                   cggcgTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATgcg                                                                                                                    <  2:358416/95‑1 (MQ=39)                                                                                     gtgTGAATGCCTTATCCTGCCTACGAATGGCGCAAGAGTCTGTAGGCGTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCCCGAGAATCTGTAGGCCTGATAAGc                                                            <  1:902734/147‑1 (MQ=14)                                                                                        tGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCATAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTa                                                         >  1:689402/1‑149 (MQ=255)                                                                                          aaCCCCTTAGCGGGACTACGGATGGCGCAAGAATCTGTAGGCCTGATAAGAGTAGCGCATCATGCATTTGCCCCCACTGCCGGATGCGGCTTGGACTCCTTATCCTGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAgc                                                       <  2:974012/149‑1 (MQ=14)                                                                                             gCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTgg                                                                                                              <  2:830181/91‑1 (MQ=40)                                                                                                ttATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCg                                                           >  2:130596/1‑139 (MQ=255)                                                                                                ttATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCg                                                           <  1:130596/139‑1 (MQ=255)                                                                                                 tATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGc                                                                                                <  2:579278/101‑1 (MQ=40)                                                                                                 tATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGc                                                                                                >  1:579278/1‑101 (MQ=255)                                                                                                   tCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTTTAGGCCTGATAAGCGTAGCGCATCAGGc                                              >  1:130887/1‑149 (MQ=255)                                                                                                   tCCGGCCTACGAATGGCGCAAGAATCTGTAAACATATTGAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGc                                              >  1:777645/1‑149 (MQ=14)                                                                                                      ggCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCAGCTGGCATTTGCCACAACTTGCGAATGCGCCGTGGACGCCCTATCCGGCCTAAAATCAGCGCGACAATCTGTAGGCCTGATGAGCGCACCGCAAGAGGCaat                                           >  2:512547/1‑147 (MQ=9)                                                                                                       gCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAttt                                          <  2:777645/149‑1 (MQ=255)                                                                                                       gCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTCGACGCCTTATCCGGCTTACAAGTGGGCGGAGAATCTGTAGGCTTGATAAGGGTGGCGCATAAGGAAttt                                          >  2:257022/1‑149 (MQ=14)                                                                                                          tACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTc                                       >  1:577525/1‑149 (MQ=255)                                                                                                            cGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCAc                                     <  2:94438/149‑1 (MQ=255)                                                                                                              attGGCGCAAGAATCCGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCa                                   <  1:392741/147‑1 (MQ=255)                                                                                                                  gcgcAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTGTCACCATTGc                               >  1:902060/1‑149 (MQ=255)                                                                                                                    gcAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCg                             >  1:916582/1‑149 (MQ=255)                                                                                                                        gAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGc                                                                                                <  2:1004276/78‑1 (MQ=255)                                                                                                                        gAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGc                                                                                                >  1:1004276/1‑78 (MQ=255)                                                                                                                        gAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGTATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATg                         >  1:901059/1‑149 (MQ=255)                                                                                                                        gAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGAGTAGGCCATGAGGCATTTGGGACCCGTGCCGGGTg                         >  2:892809/1‑149 (MQ=14)                                                                                                                          aTCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATgcg                       >  1:133272/1‑149 (MQ=255)                                                                                                                             tGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGTTAAGCGTAGCGCATCGGGCATTTGTCGCCATTGCTGGTTgcggcg                    >  2:745339/1‑149 (MQ=17)                                                                                                                             tGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCGGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCGTTGCCGGATgcgggg                    >  2:503845/1‑147 (MQ=255)                                                                                                                                 ggCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGaa                <  1:783059/149‑1 (MQ=255)                                                                                                                                  gCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTgg                                                                                      >  2:51844/1‑78 (MQ=255)                                                                                                                                  gCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTgg                                                                                      <  1:51844/78‑1 (MQ=255)                                                                                                                                  gCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAAc               <  2:991353/149‑1 (MQ=255)                                                                                                                                          aGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATc       <  1:63791/149‑1 (MQ=255)                                                                                                                                           gCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATcc      <  2:577525/149‑1 (MQ=255)                                                                                                                                            cGTAGCGCATCAGGCATTTGCCATCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCg     <  2:181064/149‑1 (MQ=255)                                                                                                                                             gTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATATGTAGGGCTGATAAGCGTAGGGCATCAGGCGTTCGGCACCATTCCCGGATGCGGCGTGAAGGCCTTacgcgg    >  1:142006/1‑144 (MQ=17)                                                                                                                                               aGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGcc  <  1:982300/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                 CCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCC  >  NC_000913_3_vch_tpiA/339776‑340066

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.