New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	= 339818	90 (1.530)	5 (0.090)	5/264	7.7	5.5%	noncoding (62/358 nt)	REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences
	?	NC_000913_3_vch_tpiA	= 339829	85 (1.520)					noncoding (73/358 nt)	REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences	REP23 (repetitive extragenic palindromic) element; contains 8 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCCACCTTTTGCCTGCTTCGAGAAAGCCATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTA  >  NC_000913_3_vch_tpiA/339683‑339975                                                                                                                                                    |                                                                                                                                                   tCCACCTTTTGCCTGCTTCGAGAAAGCCATTCTTGGCTGGTGCGACCGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGCTAAGCGTAGCGCAt                                                                                                                                                  >  2:392741/1‑149 (MQ=255)          tGCCTGCTTCGAGAAAGCCATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAttt                                                                                                                                         <  1:730956/149‑1 (MQ=255)          tGCCTGCGTCGAGAAAGACATTCTTGGCTGGTGCGTACGTTACTCCGCGTGGTCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAttt                                                                                                                                         <  2:950170/149‑1 (MQ=18)            ccTGCTTCGAGAAAGCCATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGt                                                                                                                                       >  1:181064/1‑149 (MQ=255)             cTGCTTCGAGAAAGCCATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTc                                                                                                                                      >  1:94438/1‑149 (MQ=255)             cTGCTTCGAGAAAGCCATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGACTACGAAT‑GGCGCAAGAATCTGTAGGCCTAATAAGCGTAGCGCATCTGGCATTTGTc                                                                                                                                      >  2:114500/1‑149 (MQ=255)             cTGCTTCGAGAAAGCCATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGACTTTCCAGGCCAACTAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTc                                                                                                                                      >  1:243937/1‑149 (MQ=25)             cTGCTTCGAGAAAGCCATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACATACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCACGAATCTGTAGGCCTTCTAACCGTAGCCCATCAGGCATTTTTc                                                                                                                                      >  2:504186/1‑149 (MQ=25)               gcgtCGAAAAAGCGATGCTTGGCTGGTGCGAACGTTACGGAGTCTGACCTACATGTTCATGCCGGAGGCGGACTCAACGTCTGATCCGGCGTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCAc                                                                                                                                    <  2:436043/146‑1 (MQ=21)               gCTTCGAGAAAGCCATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCAc                                                                                                                                    <  2:385778/149‑1 (MQ=255)               gCTTAGAGAAAGCCATACGTGGCTGGTGCGAACGTTACGGCGTCGGACCTACATGTTCAGGCCGGAGGCGGCGTGAACGCCTTACCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCAc                                                                                                                                    <  1:337259/149‑1 (MQ=21)                 ttCGAGAAAGCTATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GTCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCa                                                                                                                                  <  2:886442/149‑1 (MQ=255)                 ttCGAGAAAGCCATTCTTGGGTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCa                                                                                                                                  <  2:886614/149‑1 (MQ=255)                   cGAGAAAGCCATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCAtt                                                                                                                                <  1:306058/149‑1 (MQ=255)                     agaAAGCCATTCTTGGCTGGTGCGAACGTTAAGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGc                                                                                                                              <  1:717688/149‑1 (MQ=255)                        aaGCCATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCgg                                                                                                                           >  2:495069/1‑149 (MQ=255)                          gCCATTCTTGGCTGGTGCTAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGAt                                                                                                                         <  1:452011/149‑1 (MQ=255)                          gCCATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGAt                                                                                                                         >  2:813611/1‑149 (MQ=255)                           ccATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATg                                                                                                                        >  1:268494/1‑149 (MQ=255)                            cATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGc                                                                                                                                             >  2:900176/1‑127 (MQ=255)                            cATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGc                                                                                                                                             <  1:900176/127‑1 (MQ=255)                            cATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATgc                                                                                                                       >  1:267154/1‑149 (MQ=255)                            cATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATgc                                                                                                                       >  2:651216/1‑149 (MQ=255)                              ttCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATgcgg                                                                                                                     >  1:818218/1‑149 (MQ=255)                               tCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATgcggc                                                                                                                    <  2:286817/149‑1 (MQ=255)                               tCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATgcggc                                                                                                                    >  2:197309/1‑149 (MQ=255)                                    gCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTgca                                                                                                               >  2:997568/1‑147 (MQ=255)                                        gTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGcc                                                                                                           >  1:994598/1‑149 (MQ=255)                                           cGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGGACGCCTTGGCCGGCCTACGAAT‑TGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTa                                                                                                        <  1:979383/149‑1 (MQ=255)                                           cGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTa                                                                                                        <  1:108633/149‑1 (MQ=255)                                            gAACGTTACGGCGTCTGACCTGCGTGTTCATGCGGGATGCGGGGTGAACGCGTTATCCGGCCTACGAAT‑GGCGCAAGATTCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCtttt                                                                                                       <  2:803082/149‑3 (MQ=17)                                            gAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTAt                                                                                                       <  1:806842/149‑1 (MQ=255)                                             aaCGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTCGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATc                                                                                                      >  1:236737/1‑149 (MQ=255)                                                 ttACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCa                                                                                                                                  >  2:583053/1‑117 (MQ=255)                                                 ttACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCa                                                                                                                                  <  1:583053/117‑1 (MQ=255)                                                 ttACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGc                                                                                                  >  1:726559/1‑149 (MQ=255)                                                 cgacgcggTCTGATCTACTTGTTTATTCTGGGGTCGGCTTGAACGCCTGTTCCGGCCTACGAAT‑TGCGCAACAATCTTTATGCCTTATAACCGTATCGCGTTCGGCATTTTTCACCATTGCCGGATGCGGCGTAAACGCCTTATCCGGc                                                                                                  <  2:157953/142‑1 (MQ=9)                                                         tCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATc                                                                                                      <  1:276355/137‑1 (MQ=255)                                                         tCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATc                                                                                                      >  2:276355/1‑137 (MQ=255)                                                         tCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAt                                                                                          <  1:386609/149‑1 (MQ=255)                                                             aCCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt                                                                                                                                           <  1:206779/96‑1 (MQ=255)                                                             aCCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt                                                                                                                                           >  2:206779/1‑96 (MQ=255)                                                               cTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATGAGGCATTTGTCAAAATTGCCGGCTGCGGCGTGTACGCCTTATCCGGCCTCCGACTGgcgcg                                                                                    >  2:611527/1‑148 (MQ=14)                                                               cTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGcc                                                                                                                             >  1:427309/1‑108 (MQ=255)                                                               cTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGcc                                                                                                                             <  2:427309/108‑1 (MQ=255)                                                                tACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCaa                                                                                   <  1:522975/149‑1 (MQ=255)                                                                 aCATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCGCCATCGCCGGATGCGGCGTGAACGCCTTATCCGCCCTACGAATGGCGCCAg                                                                                  >  1:141257/1‑149 (MQ=255)                                                                    tGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGGGCCCGAAt                                                                               >  1:881467/1‑149 (MQ=255)                                                                     gTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCGTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGCATGCGCCATGAACTCCTTATCCGGCCTACAAGTGGCGCAGGAATc                                                                              >  2:947781/1‑149 (MQ=14)                                                                         aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGAAAGAATCTGTAGGCCTAATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGTTGCGGCGGGAACGCCTTATCCGCCCTACGGAGGGGGCCAGAGTCTgga                                                                          >  1:183583/1‑147 (MQ=14)                                                                          tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTGCCCAATCAGGCATCTGTCACCGTTGCCGGCTCCAGCGCCAACGCCTTATACCACCAACGAATGGAGCAAGTATCGGtgg                                                                         >  2:825902/1‑147 (MQ=14)                                                                             cGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTCGTCACCATTGCCGGATGCGGCGGGAACGCCTTATCCGGCCTACGACTGGCGCAAAAATCTGTAGGcc                                                                      >  2:902734/1‑149 (MQ=255)                                                                              ggATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCt                                                                     <  1:651216/149‑1 (MQ=255)                                                                              ggATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCt                                                                     <  1:197309/149‑1 (MQ=255)                                                                                   cggcgTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGGAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATaa                                                                <  1:174967/149‑1 (MQ=255)                                                                                   cggcgTGAACGCCTTACCCGGCCTACGAAT‑GACGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATaa                                                                <  1:175292/149‑1 (MQ=255)                                                                                     gcgTGAACGCCTTATCCGGCCTACGAATAGGTGTATG‑AGCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAGACTGTCGGCCTTATAAGc                                                              >  2:494319/1‑149 (MQ=14)                                                                                        tGAACGCCTTATCCGGCCTACAAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTa                                                           >  1:511191/1‑149 (MQ=255)                                                                                         gcaCGCCGTCTCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGAGAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCAGATAAGCGTAg                                                          <  1:438685/147‑1 (MQ=14)                                                                                          aaCGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGGGCAAGAGTCTTGAGTCCTGATAAGCGTAgc                                                         >  1:803143/1‑149 (MQ=14)                                                                                             gCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGa                                                                                                                >  1:830181/1‑91 (MQ=38)                                                                                              ccTTATCCGGCCTACGAAT‑GGCGCAAGAATATGACTTCCGGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCGGTGGGCCTGGTAAGGGTAGCGCAt                                                     >  2:227703/1‑149 (MQ=14)                                                                                                ttATCCGGCCTACGTAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCa                                                   <  1:266401/149‑1 (MQ=255)                                                                                                 tATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTa                                                                          <  1:14025/125‑1 (MQ=255)                                                                                                 tATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTa                                                                          >  2:14025/1‑125 (MQ=255)                                                                                                     cGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAt                                              >  2:51244/1‑149 (MQ=255)                                                                                                      ggCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAt                                                                                          <  1:474480/104‑1 (MQ=40)                                                                                                      ggCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAt                                                                                          >  2:474480/1‑104 (MQ=40)                                                                                                       gCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAttt                                            <  1:932265/149‑1 (MQ=255)                                                                                                          tACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCg                                                                                                                            >  2:139523/1‑66 (MQ=255)                                                                                                           aCGACT‑GGCGCAAGAATCTGTAGGCTTGATCAGCGTAGCGCATCAGGCATCTGTCACCATTGCCGGATGCGGCGTGAACGACTTCTGCGGCTTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGcca                                        <  1:874710/149‑1 (MQ=14)                                                                                                              aaT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCAGCAGGCATTTGccgcca                                     >  1:356827/1‑149 (MQ=255)                                                                                                                     gcAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAGTGGCGCGAGAATCTGTAGGCCTGATAAGCGTAGCCCACCAGCCATTTGTCGCCACTGCCg                               >  2:1026858/1‑149 (MQ=11)                                                                                                                      cAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCACATCAGGCATTTGCCACCACTGCCgg                              >  1:1019631/1‑149 (MQ=255)                                                                                                                                  ggCCTGATAAGCGTCGCGCATCCGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCGTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCCCTGCCGGATGCGGCGTGGa                  <  1:936908/149‑1 (MQ=255)                                                                                                                                  ggCCTGATAAGCGTAGCGCATCCGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGACCAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGa                  <  2:175539/149‑1 (MQ=255)                                                                                                                                  ggCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGa                  <  2:1019631/149‑1 (MQ=255)                                                                                                                                   gCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGAc                 >  1:432827/1‑149 (MQ=255)                                                                                                                                    ccTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCCCCACTGCCGGCTGCGGCGGGGGCg                >  1:340700/1‑149 (MQ=255)                                                                                                                                    ccTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACg                >  1:788568/1‑149 (MQ=255)                                                                                                                                     cTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGc               >  1:628624/1‑149 (MQ=255)                                                                                                                                      tGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGcc              <  2:511191/149‑1 (MQ=255)                                                                                                                                      tGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGcc              >  1:507251/1‑149 (MQ=255)                                                                                                                                       gATAAGCGTAGCGCATCAGGCATTTGTCACCATTGGCGGATGCGGCGTGAACGCCTTATCCGGCCTACGTATTGCGCGAGAATCTTTAGGCCTGATAAGCGTAGCCCACCGGGCGTTTGCCACCACTGCCGGATGCGGCGCGGACGCCt             >  2:621346/1‑149 (MQ=14)                                                                                                                                       ctaaaGGGTGGCGCATCCGGCAGTCGTCAGCAGTGCCGGATGGGGCGGGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATTTGTAGGCCTGATAAGCGTAGCGCATCAGGCATCTGCGACCACTGCCGGATGCGGCGTGGACGCCt             <  2:766724/146‑1 (MQ=14)                                                                                                                                              gTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCgg      <  2:267154/149‑1 (MQ=255)                                                                                                                                              gTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCgg      >  1:614595/1‑149 (MQ=255)                                                                                                                                                  cgcATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTa  <  2:628624/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                   TCCACCTTTTGCCTGCTTCGAGAAAGCCATTCTTGGCTGGTGCGAACGTTACGGCGTCTGACCTACATGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAAT‑GGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGTCACCATTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGAATGGCGCAAGAATCTGTAGGCCTGATAAGCGTAGCGCATCAGGCATTTGCCACCACTGCCGGATGCGGCGTGGACGCCTTATCCGGCCTA  >  NC_000913_3_vch_tpiA/339683‑339975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.