New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_vch_tpiA	3993706 =	45 (0.760)	6 (0.110)	5/264	7.7	12.0%	noncoding (3993706/4641682 nt)	repeat_region	repeat region
	?	NC_000913_3_vch_tpiA	3993732 =	45 (0.800)					noncoding (3993732/4641682 nt)	repeat_region	repeat region
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAGGTTGATGGTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCAT  >  NC_000913_3_vch_tpiA/3993588‑3993880                                                                                                                                                 |                                                                                                                                                      gAAGGTTGATGGTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCaa                                                                                                                                                   <  1:969440/149‑1 (MQ=255)    ggTTGATGGTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCt                                                                                                                                                <  1:174213/149‑1 (MQ=255)        gagggTCGTGAACAGGTGATTCCGTTCCGAACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGc                                                                                                                                            <  1:548679/146‑1 (MQ=255)              cGTGAAAAAGTGATTCCATTCCGCAAAAAATCTATCGACAACACGCCGCCTGCCAAACAGGATCACAATACGCCGCTATAACAGCAATATTATTCGTGATGAACCTGCCGGAAACCGAGGCTTATCCGGCATGCAATCTTAGCGGAAac                                                                                                                                      <  2:25897/149‑1 (MQ=255)                  aaCAGGTGATTCCGTTCCGCACAAAATCTATCGGTACCATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTGGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGGAATCTTAGCGGAAactgac                                                                                                                                  <  2:756302/149‑1 (MQ=255)                  aaCAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAgctgac                                                                                                                                  >  1:888324/1‑149 (MQ=255)                  aaCAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAactgac                                                                                                                                  <  1:794172/149‑1 (MQ=255)                    cAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCATGCCAAGCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAactgactg                                                                                                                                >  1:514553/1‑149 (MQ=255)                     aGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGt                                                                                                                               >  1:966400/1‑149 (MQ=255)                          aTTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGAACACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCAc                                                                                                                          >  2:210327/1‑149 (MQ=255)                            tccgttccgCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCAccc                                                                                                                        >  1:169723/1‑149 (MQ=255)                                ttccgCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCct                                                                                                                    <  2:398456/149‑1 (MQ=255)                                       caAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGt                                                                                                             >  2:755064/1‑149 (MQ=255)                                                   gTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCATTCATAGCGGAACATGACTGTTTGACCCGCCTGCTGCGTCGCCGCCTGTTc                                                                                                 >  1:765115/1‑149 (MQ=255)                                                   gTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCTGCCTGCTTCGTCGCCGCCTGTTc                                                                                                 >  1:549655/1‑149 (MQ=255)                                                        aTGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGGGATGAACGTGCCGGAAAGCGAGGCTTATCAGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCCCCTGCTGCGTCTCCGCCTGTCCGAGCa                                                                                            >  2:374055/1‑149 (MQ=255)                                                                tGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAg                                                                                   >  2:92498/1‑149 (MQ=255)                                                                tGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAg                                                                                   >  2:865586/1‑149 (MQ=255)                                                                  gcAATCAGGATCACGATACGCCGATATTACAGCAATCTTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGaa                                                                                 <  2:514553/148‑1 (MQ=255)                                                                  ccAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGaa                                                                                 <  1:865586/149‑1 (MQ=255)                                                                    aaTCAGGATCCCGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAgg                                                                               <  1:576352/149‑1 (MQ=255)                                                                      tCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGtt                                                                             >  1:37740/1‑149 (MQ=255)                                                                         ggATCACGATACGCCGTTTTGACGGCAAGATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTcg                                                                          <  2:1043203/149‑1 (MQ=255)                                                                         ggATCACGATACGCCGCTATTACAGCAATATTTTTCGTTTTTTATGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTcg                                                                          >  2:900453/1‑149 (MQ=255)                                                                          gATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTcgc                                                                         <  1:781778/149‑1 (MQ=255)                                                                                     gccgcTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAactgac                                                                                                                                  <  1:35440/82‑1 (MQ=255)                                                                                     gccgcTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAactgac                                                                                                                                  >  2:35440/1‑82 (MQ=255)                                                                                        gcTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGACGGTTTCGCCGCTGCGATCACaa                                                           >  2:923651/1‑149 (MQ=255)                                                                                          tATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCA‑CATAGCTCCAGAAGGTTTCGCCGCTGCGATCACAAAt                                                         <  1:1032363/149‑1 (MQ=255)                                                                                                  cAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCAt                                                 >  2:965971/1‑149 (MQ=255)                                                                                                      atTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGCCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGcc                                             >  2:748602/1‑149 (MQ=255)                                                                                                       tttttCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGCAGGTTTCGCCGCTGCGATCACACGTCCAGTCAGCGCCt                                            <  2:966400/149‑1 (MQ=255)                                                                                                          ttCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTc                                         <  1:717372/149‑1 (MQ=255)                                                                                                           tCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTCa                                        <  1:210327/149‑1 (MQ=255)                                                                                                                      gggCCGGAAAGCGAGGCTTATCCGGTATGCAATCTGAGCGGAAACTGCCTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTCAGGTCAAAATgg                             <  2:43334/147‑1 (MQ=255)                                                                                                                      ctcccGGAAAGCTACCCTCATCCGTCAATCAATCCTACCAGACACTCACTGTTGCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTCAGGTCAAAATgg                             <  1:101019/146‑1 (MQ=255)                                                                                                                         ccGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTCAGGTCAAAATGGTAg                          >  1:347556/1‑149 (MQ=255)                                                                                                                           ggAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGACGCTGCGATCACAAATCCACTCATCGCCTTTCAGGTCAACATGGtgcgc                        >  2:342522/1‑145 (MQ=255)                                                                                                                             aaaGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGGTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCCGCAACTC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTCAGTTCACAATGGTAcccgc                      >  2:291856/1‑149 (MQ=255)                                                                                                                              aaGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTCAGGTCAAAATGGTAgccgcc                     <  1:755064/149‑1 (MQ=255)                                                                                                                                     gCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTCAGGTCAAAATGGTAGCCGCCCTGTTTg              <  1:92498/149‑1 (MQ=255)                                                                                                                                       ttATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGa                                                                 <  2:213553/96‑1 (MQ=255)                                                                                                                                       ttATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGa                                                                 >  1:213553/1‑96 (MQ=255)                                                                                                                                        tATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTCAGGTCAAAATGGTAGCCGCCCTGTTTGGtt           <  1:627901/149‑1 (MQ=255)                                                                                                                                        tATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTCAGGTCAAAATGGTAGCCGCCCTGTTTGGtt           >  2:340395/1‑149 (MQ=255)                                                                                                                                          tCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTgc         <  1:963041/149‑1 (MQ=255)                                                                                                                                          tCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTgc         >  1:318721/1‑149 (MQ=255)                                                                                                                                            cGGCATGCAGACTGAGCGGAAACCGACTGGTTCACCCGCCTGCTGCGGCGCCACCTGTTACAGCAATTC‑CCAGATGTTTTCGCCGCTTCGATCACAATTCCACTCATCGCCGTTCATGTCAAAATGGTAGCCGCCCTGTTTGGTTgcca       <  2:457778/149‑1 (MQ=255)                                                                                                                                                aTGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAGATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCTCTCATCGCCTTTCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTgccagcca   <  1:609101/149‑1 (MQ=255)                                                                                                                                                 tGCAATCTTCGCGTAAACTGCCTGTTTCACCCGCGTGCTGCGTCGCCGCCTGTTCTAGCAAATC‑CCTGAAGGTTTCGCCGCTGTGATCGCAAATCCACTCATCGACGTGCAGGTCAAAATGGTAGCCGCCCTGTTTCATTGCCAGCCAt  >  2:828037/1‑149 (MQ=255)                                                                                                                                                 tGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCAt  >  1:254762/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                      GAAGGTTGATGGTCGTGAACAGGTGATTCCGTTCCGCACAAAATCTATCGGTAACATGCCGCCTGCCAATCAGGATCACGATACGCCGCTATTACAGCAATATTTTTCGTGATGAACGTGCCGGAAAGCGAGGCTTATCCGGCATGCAATCTTAGCGGAAACTGACTGTTTCACCCGCCTGCTGCGTCGCCGCCTGTTCCAGCAAATC‑CCAGAAGGTTTCGCCGCTGCGATCACAAATCCACTCATCGCCTTTCAGGTCAAAATGGTAGCCGCCCTGTTTGGTTGCCAGCCAT  >  NC_000913_3_vch_tpiA/3993588‑3993880

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.