mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.31.0 revision 69e7c3c0fa11
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 76 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP016816 | 87,903 | 0 | T | . | 77.4% | 4993.3 / inf | 2518 | intergenic (+30/‑830) | JCVSYN2_00345/JCVSYN2_00350 | hypothetical protein/50S ribosomal protein L31 |
| * | CP016816 | 202,485 | 0 | T | . | 73.2% | 469.7 / inf | 448 | intergenic (+263/‑412) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 203,895 | 1 | . | T | 73.2% | 1734.0 / inf | 706 | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 165,251 | 0 | T | . | 68.2% | 2275.8 / inf | 1904 | intergenic (+215/‑327) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 165,252 | 0 | T | . | 59.2% | 8.3 / inf | 1904 | intergenic (+216/‑326) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| * | CP016816 | 203,895 | 2 | . | T | 56.2% | inf / inf | 706 | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 202,486 | 0 | T | . | 55.4% | 215.8 / inf | 447 | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 202,494 | 0 | A | T | 55.0% | 7.7 / inf | 441 | intergenic (+272/‑403) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 105,339 | 0 | T | G | 52.3% | 1493.8 / inf | 1669 | intergenic (+834/+92) | JCVSYN2_00420/JCVSYN2_00430 | translation elongation factor Tu/alanine‑‑tRNA ligase |
| * | CP016816 | 203,912 | 0 | G | T | 46.6% | 689.4 / inf | 891 | intergenic (+296/+162) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 202,477 | 0 | C | A | 46.0% | 511.0 / 263.7 | 635 | intergenic (+255/‑420) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 420,253 | 0 | C | A | 45.1% | 1695.3 / inf | 2188 | intergenic (‑536/+307) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| * | CP016816 | 203,937 | 0 | C | A | 37.9% | 1705.0 / 254.3 | 1244 | intergenic (+321/+137) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 203,924 | 0 | G | T | 37.0% | 1173.6 / 250.1 | 1056 | intergenic (+308/+150) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 203,952 | 0 | C | A | 35.8% | 2120.3 / 312.1 | 1346 | intergenic (+336/+122) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 202,481 | 0 | C | A | 35.4% | 502.0 / 79.5 | 493 | intergenic (+259/‑416) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| * | CP016816 | 76,878 | 0 | G | T | 34.0% | 4930.4 / inf | 2708 | intergenic (‑127/+58) | JCVSYN2_00300/JCVSYN2_00305 | UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein |
| * | CP016816 | 203,946 | 0 | C | A | 34.0% | 2170.7 / 239.0 | 1318 | intergenic (+330/+128) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| * | CP016816 | 420,271 | 0 | G | T | 32.9% | 3316.0 / 315.2 | 2162 | intergenic (‑554/+289) | JCVSYN2_01895/JCVSYN2_01900 | 30S ribosomal protein S10/tRNA‑Thr |
| * | CP016816 | 202,488 | 0 | T | A | 32.6% | 285.3 / 188.9 | 440 | intergenic (+266/‑409) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| Marginal new junction evidence (lowest skew 10 of 166 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP016816 | 165253 = | 1224 (0.370) | 1512 (0.520) | 190/218 | 6.9 | 61.4% | intergenic (+217/‑325) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| ? | CP016816 | = 165249 | 834 (0.290) | intergenic (+213/‑329) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser | |||||
| * | ? | CP016816 | 87906 = | 2694 (0.810) | 431 (0.140) | 155/226 | 17.9 | 15.4% | intergenic (+33/‑827) | JCVSYN2_00345/JCVSYN2_00350 | hypothetical protein/50S ribosomal protein L31 |
| ? | CP016816 | = 87902 | 2284 (0.760) | intergenic (+29/‑831) | JCVSYN2_00345/JCVSYN2_00350 | hypothetical protein/50S ribosomal protein L31 | |||||
| * | ? | CP016816 | 117946 = | 3846 (1.160) | 284 (0.100) | 135/210 | 20.1 | 8.2% | intergenic (+67/+792) | JCVSYN2_00460/JCVSYN2_00465 | ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter permease |
| ? | CP016816 | = 117942 | 3160 (1.140) | intergenic (+63/+796) | JCVSYN2_00460/JCVSYN2_00465 | ABC transporter substrate‑binding protein/spermidine/putrescine ABC transporter permease | |||||
| * | ? | CP016816 | = 437880 | 859 (0.330) | 634 (0.200) +ATAT |
116/186 | 20.7 | 35.9% | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | 437881 = | 1231 (0.370) | intergenic (‑185/+237) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | = 203895 | 434 (0.150) | 419 (0.130) +TTT |
112/212 | 27.1 | 46.6% | intergenic (+279/+179) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
| ? | CP016816 | 203896 = | 488 (0.150) | intergenic (+280/+178) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase | |||||
| * | ? | CP016816 | 437885 = | 1841 (0.560) | 122 (0.050) | 76/202 | 37.1 | 7.9% | intergenic (‑189/+233) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease |
| ? | CP016816 | = 437880 | 1370 (0.510) | intergenic (‑184/+238) | JCVSYN2_01985/JCVSYN2_01990 | glycosyl transferase/ABC transporter permease | |||||
| * | ? | CP016816 | 76896 = | 2781 (0.840) | 110 (0.040) | 81/224 | 38.9 | 4.4% | intergenic (‑145/+40) | JCVSYN2_00300/JCVSYN2_00305 | UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein |
| ? | CP016816 | = 76892 | 2342 (0.790) | intergenic (‑141/+44) | JCVSYN2_00300/JCVSYN2_00305 | UTP‑‑glucose‑1‑phosphate uridylyltransferase/hypothetical protein | |||||
| * | ? | CP016816 | = 165247 | 1508 (0.460) | 1190 (0.360) | 90/250 | 39.8 | 44.1% | intergenic (+211/‑331) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| ? | CP016816 | 165251 = | 1509 (0.460) | intergenic (+215/‑327) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser | |||||
| * | ? | CP016816 | = 202486 | 203 (0.060) | 361 (0.110) | 82/250 | 42.4 | 61.9% | intergenic (+264/‑411) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein |
| ? | CP016816 | 202490 = | 242 (0.070) | intergenic (+268/‑407) | JCVSYN2_00840/JCVSYN2_00845 | hypothetical protein/lipoprotein | |||||
| * | ? | CP016816 | = 165049 | 3507 (1.060) | 134 (0.050) | 67/220 | 43.3 | 4.2% | intergenic (+13/‑529) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser |
| ? | CP016816 | = 165050 | 2994 (1.030) | intergenic (+14/‑528) | JCVSYN2_00665/JCVSYN2_00670 | tRNA N6‑adenosine(37)‑N6‑threonylcarbamoyltransferase complex dimerization subunit TsaB/tRNA‑Ser | |||||