Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9460CA34.0% 2170.7 / 239.0 1318intergenic (+330/+128)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base C (444/392);  new base A (338/93);  total (797/521)
Fisher's exact test for biased strand distribution p-value = 2.92e-19
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 1339 total aligned reads displayed.

AAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑T‑‑TTTTTTTTTTTTTT‑‑TGT‑AAAAATAAAAGTA‑AGATTTGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTA  >  CP016816/203820‑204073
                                                                                                                                       |                                                                                                                                 
      gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAATAAAATTA‑AAATTTGGTTAAACCAAAAatatat                                                                                                                              >  2:5971128/1‑128 (MQ=255)
            gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTTTT‑‑TTTTTTTTTTTTTT‑‑TGT‑AAAATTAAAAGTA‑ATTTTTTGTTAAAACAAAAAAATATAaaaa                                                                                                                         >  2:3867073/1‑128 (MQ=255)
             acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTTTT‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAAAAAAAGTA‑AAATTTTGA‑‑AAACAAAAAAATATTaaaaa‑a‑a                                                                                                                    >  1:5738958/4‑128 (MQ=255)
              tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TGT‑AAAAATAAAATTT‑ATATTTTGATCAACCAAAACATTTTCaaaaa‑a‑a                                                                                                                    >  2:568338/1‑128 (MQ=255)
              tCTAGGCTGTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑T‑‑TTTTTTTTTTTTTT‑‑TTTAAAAAAAAAAATTA‑ATATTTGGCTCGCCCAAAACTATATCAAAAA‑A‑At                                                                                                                   >  2:2764565/1‑128 (MQ=255)
              catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAAAAAAATTT‑TTATTTGTTTAAAACAAAAATATATCaaaaa‑a‑a                                                                                                                    >  2:822118/3‑128 (MQ=255)
               gaattcTTTTTATTAAACATATAAAAATTAAAAACTTTTTAAAATTTATTTTTTATGTTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TGT‑AAAAATAAAAGTA‑AGATTTGGATCAACCAAAACTATATCAAAAA‑A‑At                                                                                                                   <  1:6621609/123‑1 (MQ=255)
               cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAATAAAATAT‑ATATTTTGATGAACAAAAAATATATATAAAA‑A‑At                                                                                                                   >  2:2254634/1‑128 (MQ=255)
               cTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑T‑‑TTTTTTTTTTTTTTTATTT‑AAAAATAAAATAA‑TTATTTTGTAAATCCAAAAAAATATaaaaaa‑a‑aa                                                                                                                   >  2:3196250/1‑127 (MQ=255)
               atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑T‑‑TTTTTTTTTTTTTT‑‑TGT‑AAAAAAAAAATTA‑ATTTTTGGATAAACAAAAAATATATAAAAAA‑A‑Att                                                                                                                  >  2:5796845/2‑128 (MQ=255)
                tAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGCCTTG‑‑‑TTATTTTTTTTTTTTTT‑‑TTT‑AAATATAAAATAA‑AAATTTGTATCAATAAAAAATTAAAAAAAAA‑A‑Ata                                                                                                                  >  1:1158324/1‑127 (MQ=255)
                 aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAATAAAATTA‑ATTTTTTTAAAAACCAAAAATATAAAAAAAA‑A‑ATTa                                                                                                                 >  1:2114607/1‑128 (MQ=255)
                 aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TGT‑AAAAAAAAAATAA‑ATATTTTTATAAACAAAAAATAAAAAAAAAA‑A‑Ataa                                                                                                                 >  2:1934839/1‑126 (MQ=255)
                  ggCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAATAAAAAAA‑ATATTTGTATCAAAAAAAAATAAAAAAAAAA‑A‑AATaa                                                                                                                >  2:2646113/1‑128 (MQ=255)
                         tattattatTTTTAAAATTAAAACGCTTTTAAATTTTTTTTTTTATGTTTT‑‑‑T‑‑TTTTTTTTTTTTTT‑‑TGT‑AAAAATAAAAGTA‑AGATTTGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAAtag                                                                                                       <  2:888734/128‑1 (MQ=255)
                           ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TTT‑TAAAAAAAAAATATATATTTTTGTAAAACAAAACTATTTATAAAA‑A‑ATTAAAAAAAAtt                                                                                                        >  1:500676/1‑127 (MQ=255)
                              taCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGT‑‑T‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAATAAAATTA‑ATATTTTTTACAACCAAAAAAATATAAAAAA‑A‑AATAAAAAAAAtatttta                                                                                                   >  2:1819976/1‑128 (MQ=255)
                               actatttaaCATTCAAACGCTTTCAAATTTTATTTTTTTGGGTTGT‑‑T‑‑TTTTTTTTTTTTTT‑‑TGT‑AAAAATAAAAGTA‑AGATTTGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAAtagtttag                                                                                                  <  1:5924847/121‑1 (MQ=255)
                                 ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAATAAAAGTA‑ATATTTGGATAAACCAAAAATATATAAAAAA‑A‑ATTAAAAAAAAtagtttagt                                                                                                 >  2:6459600/1‑128 (MQ=255)
                                  tATCAACACTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAATAAAAGTA‑ATATTTTTATAAACAAAAACTAAATAAAAAA‑ATATTaaaaatattttttgttt                                                                                                 >  1:487471/1‑116 (MQ=255)
                                   aTCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑T‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAATAAAAATA‑AAATTTGTATCAACCAAAAATAATTAAAAAA‑A‑ATTAAAAAAAAtagttttttttat                                                                                             >  2:5104564/1‑121 (MQ=255)
                                    tCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTTTT‑‑TTTTTTTTTTTTTT‑‑TGT‑AAAAAAAAAATAA‑AAATTTGTTAAAACCAAAAATTTATCAAAAA‑A‑AATaaaaaaaaaatttattttt                                                                                               >  2:4320052/1‑117 (MQ=255)
                                    tCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAAAAAAATTA‑AAATTTGGATCAACCAAAACTATAACAAAAA‑A‑ATTAAAAAAAAtattttatttta                                                                                              >  2:2500676/1‑126 (MQ=255)
                                     cAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAAAAAAAATA‑ATATTTGGAAAAACAAAAAATATAAAAAAAA‑A‑ATTAAAAAAAAtatttttttttat                                                                                             >  2:3081861/1‑121 (MQ=255)
                                         aTTACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTTTT‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAATAAAATTA‑AATTTTTGTAAAACAAAAAATA‑ATAAAAAATA‑AATAAAAAAAAAAGTTAAATTGAGttt                                                                                          >  2:747786/1‑128 (MQ=255)
                                           tACAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAATAAAATAA‑ATATTTGTAAAAACAAAAAATATAAAAAAAA‑A‑ATAAAAAAAAATATTTTATTTTATTTTaaa                                                                                       >  1:6278690/1‑128 (MQ=255)
                                            aCAACGCTTTCAAAGTGTATTTTTTAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAAAAAAATTA‑ATATTTTGATAAACCAAAAAAATTTAAAAAA‑A‑AATAAAAAAAAAATTTTATTTTAATTTaaaa                                                                                      >  2:1114178/1‑128 (MQ=255)
                                                    ttCAAAGTGTATTTTTTAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TGT‑AAAAAAAAAAGTA‑AGATTTGGAGCACCCAAAACTATATAAAAAA‑A‑ATTAAAAAAAATATTTTATTTGAGTTTAAAATCttaata                                                                              >  2:5474226/1‑123 (MQ=255)
                                                    ttCAAAGTGTATTTTTTAGGCTTGT‑‑T‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAAAAAAAAAA‑AAATTTTGATAAAACAAAAATATAAAAAAAA‑A‑ATTAAAAAAAAAAATTTATTTGAATTTaaaaaattaaaat                                                                             >  1:1008898/1‑119 (MQ=255)
                                                       aaaGTGTATTTTTTAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TGT‑AAAAATAAAATTA‑ATTTTTGGATAAACCAAAAATATATAAAAAA‑A‑ATTAAAAAAAAATGTTTATTTTATTTTAAAATATGCaaatta                                                                           >  2:6680916/1‑126 (MQ=255)
                                                           tgtATTTTTTAGGCTTGTTTT‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAAAAAAATTA‑ATATTTGGATCAACCAAAAATATTTAAAAAA‑A‑AATAAAAAAAATAATTTATTTGATTTTAAAATAAGCAAATATAGt                                                                        >  2:4772515/1‑128 (MQ=255)
                                                            gtATTTTTTAGGCTTG‑‑‑T‑‑TTTTTTTTTTTTTT‑‑TTTGTAAAAAAAAAATA‑AGATTTTGATAAACCAAACATATTTAAAAAA‑A‑ATTAAAAAAAATTCTATACTGTATTTTAAAAAATGCATAAATAGTaaa                                                                     >  2:5370787/1‑126 (MQ=255)
                                                             tATTTTTTAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TGT‑AAAAAAAAAATTA‑AGATTTGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTTTTTTTCAAATATGAAATTATAGTaaa                                                                     >  2:677984/1‑126 (MQ=255)
                                                             tATTTTTTAGGCTTGT‑‑T‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAATAAAATTA‑AAATTTTTATAAACCAAAACAATATAAAAAA‑A‑ATTAAAAAAAATAATTTTTTTGAGTTTAAAATATGaataaatatttaaa                                                                    >  1:7029683/1‑122 (MQ=255)
                                                              aTTTTTTAGGCTTGT‑‑T‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAATAAAATTA‑ATATTTGTAAAAACCAAAAATATATAAAAAA‑A‑ATTAAAAAAAATATTTTATTTTATTTTAAAATATGCATATATATTAaaaa                                                                   >  1:6520360/1‑128 (MQ=255)
                                                                  tttAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TTT‑AAAAAAAAAATTA‑AGATTTGGTTAAACCAAAACTTAATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGATTTTCAAATATGAATTATTAGTAAAAAgta                                                                >  1:5587944/1‑126 (MQ=255)
                                                                    tAGGCTTGTT‑T‑‑TTTTTTTTTTTTTT‑‑TGT‑AAAAATAAAAGTA‑AGATTTGGAAAAACCAAAAAATTATAAAAAA‑A‑ATTAAAAAAAATATTTTATTTGATTTTAAAAAATGAAAATATATTAaaaattaat                                                              >  2:4104646/1‑123 (MQ=255)
                                                                    aggcttgttttt‑‑tttttttttttttt‑‑ttt‑AAAAAAAAAAGTA‑TTTTTTGGATCAACCAAAAAAATATAAAAAA‑A‑ATTAAAAAAAATATTTTTTTTTTTTTTAAAATATGAATATATATTAAAAAGGaa                                                               >  1:5778706/12‑128 (MQ=255)
                                                                       ttttttttt‑‑tttttttttttttt‑‑ttt‑ATATTTTATAGTA‑TGTTTTGTATTAAATAATATTATATAAAAAA‑T‑ATTAAAAAATATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAAttt                                                            <  1:5366181/120‑1 (MQ=255)
                                                                       ttttttttt‑‑tttttttttttttt‑‑tGT‑AATAATAATAGTT‑AGATTTGGATCAAACAAAAATATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAAttt                                                            <  2:2361621/120‑1 (MQ=255)
                                                                        tttttttt‑‑tttttttttttttt‑‑tGT‑AAAAATAAAAGTA‑AGATTTGGATCAACTAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                                                           <  1:1325904/121‑1 (MQ=255)
                                                                         ttttttt‑‑tttttttttttttt‑‑ttt‑TAATATTAAAGTA‑TGATTTGTATCTACAAAAACTATATCATAAA‑A‑ATTAAAAATATTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                          <  2:3730916/122‑1 (MQ=255)
                                                                         ttttttt‑‑tttttttttttttt‑‑tGT‑AAAAATAAAAGTA‑AGATTTGTATAAATAAAAACTATATATAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                                                          <  1:6023/122‑1 (MQ=255)
                                                                         tgttttt‑‑tttttttttttttt‑‑tGT‑TATAATTTAAGTT‑AGATTTTGATCAATAAAATTTATATCAAAAA‑T‑ATTTAAATAAATAGTTTAGTTGAGTTTCAAATGTGCATATATAGTACAAAGGTATTTAt                                                          <  2:6988834/122‑1 (MQ=255)
                                                                          tgtttt‑‑tttttttttttttt‑‑ttt‑AAAAATAAAATTA‑ATATTTGGTTAAACCAAAAATATATAAAAAA‑A‑ATTAAAAAAAATTTTTTATTTTTTTTTAAAAATTGCATATATATTAAAAAGTAAtttttt                                                         >  2:3373932/6‑125 (MQ=255)
                                                                           ttttt‑‑tttttttttttttt‑‑tGT‑AAAAATAAAAGTA‑AGATTTGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGa                                                        <  1:6963971/124‑1 (MQ=255)
                                                                                   ttttttttttttt‑‑ttt‑TAAAATTAAATTT‑ATTTTTTGTTTAAACAAAAATTTTTTAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                                                  <  1:381405/128‑1 (MQ=255)
                                                                                   ttttttttttttt‑‑tGT‑AAAAATAAAAGTA‑AGATTTGTATTAATAATAATTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaa                                                  <  1:4452138/128‑1 (MQ=255)
                                                                                    tttttttttttt‑‑tGT‑AAAAATAAAAGTA‑AGATTTGGATCAACCAAAACTATTTAAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATATGCATATATATTACAAAGGAATTTATGATAGaaaa                                                 >  2:6550914/1‑128 (MQ=255)
                                                                                      tttttttttt‑‑tGT‑AAAAATAAAAGTA‑AGATTTGGATAATAAAAAAATATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaa                                               <  1:3703166/128‑1 (MQ=255)
                                                                                       ttttttttt‑‑tGT‑AAATATAAAAGTA‑AGTTTTGGATCAAACAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa                                              <  1:848567/128‑1 (MQ=255)
                                                                                       ttttttttt‑‑tGT‑AAAAATAAAAGTA‑AGATTTGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa                                              <  2:6134830/128‑1 (MQ=255)
                                                                                         ttttttt‑‑ttt‑ATTATTTAAAGTA‑AGATTTGGATTAATCAATACTATATCAAAAA‑A‑ATTAAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATg                                            <  1:77734/128‑1 (MQ=255)
                                                                                          tttttt‑‑tGT‑AAAAATAAAAGTA‑AGATTTTGATCATAAAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATgg                                           <  1:2648231/128‑1 (MQ=255)
                                                                                           ttttt‑‑tGT‑AAAAATAAAAGTA‑AGATTTGGATAAAACAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGa                                          <  2:6209243/128‑1 (MQ=255)
                                                                                            tttt‑‑tGT‑AAAAATAAAAGTA‑AGATTTGGATCAAACAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAt                                         <  1:6750608/128‑1 (MQ=255)
                                                                                             ttt‑‑ttt‑AAATATAAAAGTA‑TGATTTGTATAAACAAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGAtt                                        <  1:3978866/128‑1 (MQ=255)
                                                                                               t‑‑tGT‑AAAAATAAAAGTA‑AGATTTGGATCAAACAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                                      <  1:3576021/128‑2 (MQ=255)
                                                                                               t‑‑tGT‑AAAAATAAAAGTA‑AGATTTGGATAAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat                                      <  2:5592685/128‑2 (MQ=255)
                                                                                                  tGT‑AAAAATAAAAGTT‑AGATTTGGATCAAACAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGt                                     <  1:7116894/128‑1 (MQ=255)
                                                                                                       aaaaTAAAAGTT‑AGATTTGGATCAAACAAAACTATATAAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                                 <  2:6396910/128‑1 (MQ=255)
                                                                                                       aaaaTAAAAGTA‑AGATTTGGATCAAACATAACTATATAAAAAA‑A‑ATTATAAAAAATAGTTTAGTTGAGTTTCAAATATGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTatcaact                                 <  2:4538772/128‑7 (MQ=255)
                                                                                                       aaaaTAAAAGTA‑AGATTTGGATCAAAAAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGAt                                 <  1:6208672/128‑1 (MQ=255)
                                                                                                           tAATAGTA‑AGATTTGGATCAACCTAAAATATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                             <  2:4629252/128‑1 (MQ=255)
                                                                                                           tAAATGTT‑AGTTTTTGATCAATCAAAACTATATATAAAA‑A‑ATTAAATAAATTAGTTTAGTTGAGTTTCAAATCTTCATATATAGTACTAATTAATTTATGATAGAAAAAAATGGATTAGTTGATAATc                             <  2:156931/128‑1 (MQ=255)
                                                                                                            ttaatgtatgttttGGATATACTATAAATATATCTATAA‑T‑ATTTTAAAATATAGTTTTGTTGAGTTTCATATATGCATATATAGTACAAAGGATTTTATGATTTAAAAAAATGGATTAGTTGATAATc                             <  1:2279498/117‑1 (MQ=255)
                                                                                                            aaaaGTA‑AGATTTGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATcc                            >  2:140069/1‑128 (MQ=255)
                                                                                                             aaaGTA‑AGATTTGGATAAAACAAAAATATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                           <  1:1497038/128‑1 (MQ=255)
                                                                                                              taattatgATTTTGATATACAAAAACTATATCAAAAA‑A‑ATTAAATAAAATATTTTATTTGAGTTTAAAATATTAATATATAGTAAAAATGAATTTATGATATAAAAAAATTTATTAGTTGATAATCCa                           <  2:3655320/121‑1 (MQ=255)
                                                                                                              aaGTA‑AGATTTGGATCAACCAAAAATATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAt                          <  1:7176373/128‑1 (MQ=255)
                                                                                                                 tA‑AGATTTGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTTCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtatt                       >  2:6873967/1‑128 (MQ=255)
                                                                                                                 tA‑AGATTTGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttt                       <  1:5465660/128‑1 (MQ=255)
                                                                                                                 tA‑AGATTTGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTa                                                                       >  2:123256/1‑80 (MQ=255)
                                                                                                                  tatgATTTTGATCAATAAAAAATATATCAAAAA‑A‑ATTAAAAAAATTAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAtttt                       <  1:1963258/125‑1 (MQ=255)
                                                                                                                  a‑aGATTTGTATAAATTAAAAATATATAAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTAAAATCTGATTATTTAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCAttttt                      <  1:4317314/128‑1 (MQ=255)
                                                                                                                    aGATTTGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAATGGAATTTATGATAGAAAAAAATGTATTAGTTGATAATCAAtttttt                     >  1:612748/1‑128 (MQ=255)
                                                                                                                    aGATTTGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTAAAAAGGAATTTATGATAGAAAAAAATGAATTAGATGATAATCCAtatttt                     >  1:3273289/1‑128 (MQ=255)
                                                                                                                    aGATTTGGATCAACCAAAACTATATCAAAAA‑A‑ATT‑AAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAAACCAtttttaa                    >  1:1662514/1‑126 (MQ=255)
                                                                                                                    aGATTTGGATCAACCAAAACTATATCAAAAA‑A‑ATAAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATAGATTAGTTGATAATCAAttttat                     >  1:953344/1‑126 (MQ=255)
                                                                                                                     gATTTGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCAACATATATAGTACAAAGGAATTTATGATAGAAAAAAAAGAATTAGTTGAGAAACCATTTTTTa                    >  1:3167011/1‑128 (MQ=255)
                                                                                                                      aTTTGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATACATTTTTTaa                   >  2:7047956/1‑128 (MQ=255)
                                                                                                                      aTTTGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAAACCATTTTTTaa                   >  1:4614967/1‑128 (MQ=255)
                                                                                                                       tttGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAt                  >  2:4427425/1‑128 (MQ=255)
                                                                                                                        ttGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAtt                 >  1:3025440/1‑128 (MQ=255)
                                                                                                                         ttgATTAACAATAAATATATAAAAAA‑T‑ATTAATAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAAttt                <  1:2441008/126‑1 (MQ=255)
                                                                                                                         tGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCa                           <  2:1694624/117‑1 (MQ=255)
                                                                                                                         tGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGATTAGTTGAGTTTCAAATCTGCATATATATTACAAAGGAATTTATTATAGAAAAAAATAGATAAGTTGAAAATCCATATTTTAAtta                >  1:3407426/1‑127 (MQ=255)
                                                                                                                            aTCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTTATAATCCATTTTTTAATTTTGt             >  1:6398534/1‑128 (MQ=255)
                                                                                                                             tCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGtt            <  2:491237/128‑1 (MQ=255)
                                                                                                                             tCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGtt            <  2:2889653/128‑1 (MQ=255)
                                                                                                                              cAACCAAAACTATATAAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGttt           <  2:6274111/128‑1 (MQ=255)
                                                                                                                               aaataaaaCTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTTGTTGAGTTTCAAATCTGCATATATAGTACAAAGTGATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTtta          <  1:1745133/124‑1 (MQ=255)
                                                                                                                               aaCCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTtta          >  1:2820080/1‑128 (MQ=255)
                                                                                                                                aCCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTTGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAACGGATTAGTTGATAATCCATTTTTTAATTTTGTttat         >  1:5101787/1‑128 (MQ=255)
                                                                                                                                aCCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttat         >  2:5249761/1‑128 (MQ=255)
                                                                                                                                aCCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttat         >  2:3474760/1‑128 (MQ=255)
                                                                                                                                  cAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATTTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTttatta       <  1:6833178/128‑1 (MQ=255)
                                                                                                                                  cAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaaaaaaa                                              <  2:212537/89‑1 (MQ=255)
                                                                                                                                   aaaaCTATATCAAAAA‑A‑ATTAAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaa      <  2:714549/128‑1 (MQ=255)
                                                                                                                                    aaaCTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTaaa     >  1:4720745/1‑128 (MQ=255)
                                                                                                                                       |                                                                                                                                 
AAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGGCTTG‑‑‑T‑‑TTTTTTTTTTTTTT‑‑TGT‑AAAAATAAAAGTA‑AGATTTGGATCAACCAAAACTATATCAAAAA‑A‑ATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTTGATAATCCATTTTTTAATTTTGTTTATTAAATTA  >  CP016816/203820‑204073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑