Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816203,9120GT46.6% 689.4 / inf 891intergenic (+296/+162)JCVSYN2_00845/JCVSYN2_00850lipoprotein/inorganic diphosphatase
Reads supporting (aligned to +/- strand):  ref base G (144/323);  new base T (407/0);  total (568/323)
Fisher's exact test for biased strand distribution p-value = 0.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 967 total aligned reads displayed.

AAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203787‑204039
                                                                                                                                            |                                                                                                                                       
   aataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACTCTTTCAAATTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑taaa                                                                                                                                >  1:6254232/1‑128 (MQ=255)
   aataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGATCTATGCTTTTTATTAAACATATCAACATAACAAAGCTTTCAAAGAGTATTTTTTATA‑‑C‑‑‑TTG‑‑‑‑TATTTATT‑‑TTTTT‑‑TTTTAT‑‑‑aaa                                                                                                                                 >  2:2176141/1‑128 (MQ=255)
      aaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTCTGTTCTAGGTTTTTTATTATACTTAACAACATTAACACCCTTTAAAAGTTTATTTTTTAGG‑‑C‑‑‑TTT‑‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATa                                                                                                                             <  2:3137311/128‑1 (MQ=255)
       aaaatTTTTTATTTTAAGCCATTTTTAAAAAAGCCTTAGTTTTAGGCTTTTTATTATAATTATCAAAATTACAACGCTTTCAAATTTTTTTTTTTAGG‑‑G‑‑‑TTGT‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATa                                                                                                                             <  1:5566003/128‑1 (MQ=255)
         aatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTATAGGCTTTTTATTATACTAATCAACATTACAACGCTTTCAAATTGTAGATTTTAGC‑‑C‑‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTTTGTTTTTT‑‑‑AAAAAtta                                                                                                                            >  1:5742802/1‑126 (MQ=255)
            ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAATAAAAg                                                                                                                         >  2:6465565/1‑128 (MQ=255)
            ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAATAAAAGTa                                                                                                                       >  2:3977376/1‑128 (MQ=255)
              ttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑TAAAATAAAAGTa                                                                                                                       >  2:5455725/1‑128 (MQ=255)
               tattttAACTCCATTTTTAAAAAACCCATTTTTCTATCCTTTTTTTTATAATTATAAAAAATAAAACGCTTTAAAAGTGTTTTTTTTTGG‑‑CTTTTTT‑‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAAGTa                                                                                                                       <  1:7189515/125‑1 (MQ=255)
                 aTTAAAATCAATTTTAAATAAATCATATGTTATTGGGTTTTTATTATAATTATTAAAATTAAAACCTTTTAAAATTTTATTTTTTAGGTTT‑‑‑TTT‑‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAAGTAAGa                                                                                                                   <  1:6418285/128‑1 (MQ=255)
                    tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTTTTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAATTAAGAtt                                                                                                                >  2:4110948/1‑128 (MQ=255)
                      aaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTTTTTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAAGTAAGAttt                                                                                                               >  1:6638612/1‑128 (MQ=255)
                       ataaaTTTTTAAAAAATCCTTTGTTTTTGGTTTTTTATTATACTTATAAAAATATCAACGCTTTAAAAGTGTTTTTTTTATG‑‑C‑‑‑TTGTTTTTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAAGTAAGATTTgg                                                                                                             <  2:866926/124‑1 (MQ=255)
                        gCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAATTAATATTTGGAt                                                                                                           >  2:5518044/1‑128 (MQ=255)
                          cATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTTTTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAAGTAAAAttttgttc                                                                                                          >  2:6537918/1‑123 (MQ=255)
                           aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGT‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAATAAAAGTAAGATTTGGAtaatc                                                                                                       >  2:3073090/1‑124 (MQ=255)
                           aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGT‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAAATAATAtttttataaac                                                                                                       >  2:4885420/1‑120 (MQ=255)
                             ataataaaaaGCCTAGATCATAGGCTTTTTATTATACTTATCAACATTAAAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAAGTATTATTTGGTTCAGcc                                                                                                      >  2:4447604/6‑128 (MQ=255)
                                    aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAATTAAGATTTGGTTAAACCAAAAAta                                                                                              >  1:2433460/1‑128 (MQ=255)
                                     aaGCCTATTTTCTAGGCTTTTTATTATACTTATAAAAATTACAACGCTTTCAAATTTTTTTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACtat                                                                                             <  1:5790074/128‑1 (MQ=255)
                                       gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAATAAAAATAAGATTTGGATCAACCAAAAcattat                                                                                           >  1:3174450/1‑123 (MQ=255)
                                         cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTT‑‑TTT‑‑T‑‑‑AAAAATAAAAGTAATATTTGGTAAAACCAAAAATATTTaaaaaa                                                                                     >  2:5080967/1‑128 (MQ=255)
                                          tATGTTTTAGGGTTTTTATTATACTTATCAAAATTACAACTCTTTCAAATTGTTTTTTTTAGG‑‑C‑‑‑TTGT‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCaaa                                                                                       <  1:546420/128‑1 (MQ=255)
                                             gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGT‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑ATAAAAAAAAAATAAATTTTGTTTAAACCAAAACTATaaaaaaaa                                                                                     >  1:4709335/1‑128 (MQ=255)
                                              ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TTTTTTTTATTTTT‑‑TTTTTT‑‑‑AAAAAAAAAATTAATATTTTAATAAAACAAAAATATATAaaaaaa                                                                                   >  2:3860302/1‑128 (MQ=255)
                                              acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGAAAAAACAAAAATATATCAAAAAAAtt                                                                                >  1:115989/4‑128 (MQ=255)
                                               tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAAAAAAAATAATATTTTGAAAAACAAAAAAATATaaaaaaaaa                                                                                 >  2:5248503/1‑127 (MQ=255)
                                               tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAATTTATATTTTGATCAACCAAAACATTTTCaaaaaaa                                                                                  >  2:568338/1‑128 (MQ=255)
                                               tCTAGGCTGTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTTTA‑‑AAAAAAAAAATTAATATTTGGCTCGCCCAAAACTATATCAAAAAAAt                                                                                 >  2:2764565/1‑128 (MQ=255)
                                               catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAAAAAAATTTTTATTTGTTTAAAACAAAAATATATCaaaaaaa                                                                                  >  2:822118/3‑128 (MQ=255)
                                                atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGT‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑TAAAATAAAATTAAAATTTGAATCAAACAAAACTAAAAAAAAAAAAtt                                                                                >  1:6181697/2‑128 (MQ=255)
                                                atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGT‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAATAAAATTAATCTTTGGAAAAACCAAAACATAAACAAAAAAAtt                                                                                >  2:7143033/2‑128 (MQ=255)
                                                  aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAATAAAATTAATTTTTTTAAAAACCAAAAATATAAAAAAAAAATTa                                                                               >  1:2114607/1‑128 (MQ=255)
                                                  aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAAAAAAATAAATATTTTTATAAACAAAAAATAAAAAAAAAAAAtaa                                                                               >  2:1934839/1‑126 (MQ=255)
                                                  aGGCGTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑TAAAAAAAAATAAAAATTAGGTTACACCAAAACTAAAGAAAAAAAAtat                                                                               >  1:6991374/1‑126 (MQ=255)
                                                         ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAAAAAAAATAATAATTTTTAAAAACAAAAAAAAATTAAAAAAATTaaaaaaaaaa                                                                      >  2:1857141/1‑126 (MQ=255)
                                                            ttataattataaAAATTAAAACTCTTTAAATTTTTTTTTTTTTGG‑‑G‑‑‑TTGTTTTTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAta                                                                      <  1:855429/128‑1 (MQ=255)
                                                            ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTTTTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAAAAAAATTAATATTTTGATAAAAAAAAAAAATATAAAAAAAATTaaaaaaaaaa                                                                      >  2:1036203/1‑126 (MQ=255)
                                                            ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑TAAAAAAAAAATATATATTTTTGTAAAACAAAACTATTTATAAAAAATTAAAAAAAAtt                                                                      >  1:500676/1‑127 (MQ=255)
                                                            ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAAAAAAATTAATATTTTGATCAACAAAAACAAAataaaaaaaaataaaaaaaaaaa                                                                     >  2:3774730/1‑125 (MQ=255)
                                                             tataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTTTTTAAAAAAAAAAAGTAAAATTTTTATAAACCAAAAATATTTAAAAAAAATTTAAAAAAAtat                                                                     >  2:2651847/1‑127 (MQ=255)
                                                              ataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑A‑‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTT‑‑TTT‑‑T‑‑‑AAAAATAAAATTAAATTTTTATTAAACAAAAAATATAAAAAAAAAATAAAAAAAAAaatattagt                                                               >  2:235441/1‑128 (MQ=255)
                                                                actatttaaCATTCAAACGCTTTCAAATTTTATTTTTTTGG‑‑G‑‑‑TTGT‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAAtagtttag                                                                <  1:5924847/121‑1 (MQ=255)
                                                                aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAATAAAATTAAAATTTTGTAAAAACAAAAAAATTAAAAAAAAAATAAAAAAAAtaatttt                                                                 >  2:6874489/1‑127 (MQ=255)
                                                                aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGT‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAATAAATTTTTGGAAAAAAAAAAAAAATTAAAAAAAAATTAAAAATAAaatttttg                                                                >  2:4579288/1‑126 (MQ=255)
                                                                 cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑ATAAATTAAATTAATATTTTGATAACACAAAATTATATAAAAAAAATTaaaaaaaaattattat                                                                >  1:1764578/1‑120 (MQ=255)
                                                                  ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑TAAAAAAAAAATAATATTTTTTAAAAACCAAAAAATATAAAAAAAAATTAAAAAAAAAtattttt                                                                 >  1:2304783/1‑127 (MQ=255)
                                                                   tATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTGA‑‑‑AAAAAAAAAATTAATTTTTGGATAAACAAAAACAATAAAAAAAAAATTAAAAAAAAtattttattt                                                              >  2:4363477/1‑128 (MQ=255)
                                                                      cAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTTTTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAAAAAAATTAAGATTTTGATAAACCAAAAATATTTAAAAAAAAATAAAAAAAAtatttttattta                                                            >  1:7055389/1‑122 (MQ=255)
                                                                      cAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAATAAAATTAAGATTTGGATAAAACAAAAAAAAATAAAAAAAATTAAAAAAAAtattttattatat                                                           >  2:6098047/1‑122 (MQ=255)
                                                                          aTTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTTTTTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAATAAAATTTATATTTGGAAAAACCAAAAATAAAAAAAAAAAATTAAAAAAAAtagtttttgtgattt                                                         >  1:6862174/1‑119 (MQ=255)
                                                                          aTTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTTTTTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAATAAAATTAAAATTTGGATAAACAAAAAATATAAAAAAAAAATTAAAAAAAAaagtttattttattt                                                         >  2:6431006/1‑123 (MQ=255)
                                                                          aTTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTTTTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAATAAAATTAAATTTTTGTAAAACAAAAAATAATAAAAAATAAATAAAAAAAAAAGTTAAATTGAGttt                                                        >  2:747786/1‑128 (MQ=255)
                                                                          aTTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGT‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAATAAAATTAATATTTGGTTAAACCAAAAATATATAAAAAAAATTAAAAAAAAtattttagtttatttaaa                                                      >  2:5991292/1‑120 (MQ=255)
                                                                             aCAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAAAAAAATTAATATTTTGATAAACCAAAAAAATTTAAAAAAAAATAAAAAAAAAATTTTATTTTAATTTaaaa                                                    >  2:1114178/1‑128 (MQ=255)
                                                                             aCAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAAAAAAATTAATATTTGGAAAAACCAAAAAAATAAAAAAAAAAATAAAAAAAATATTTTATTAAATTTTCaaa                                                    >  1:6327201/1‑128 (MQ=255)
                                                                             aCAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑TAAAATAAATTTAAGATTTGGATAAACAAAAAATTTTAAAAAAAATTTAAAAAAAAtatttttgttttggtacaaagg                                                  >  1:1509632/1‑116 (MQ=255)
                                                                              cAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTTTTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAATAAAAGTAAAATTTTGTAAAACAAAAAATATATAAAAAAAATTAAAAAAAAAAATTTTCTTTAGttaaaaa                                                    >  1:3451556/1‑123 (MQ=255)
                                                                              aaaatttttAAAAGTTTTTTTTTTATGG‑‑T‑‑‑TTTT‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAAt                                                   <  2:5614616/122‑1 (MQ=255)
                                                                                aCGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTTTTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑TAAAATAAAATTATAATTTTTTTAAACCAAAAATATATAAAAAAAAATTAAAAAAATATTTTTATTGTTTTTAAAAta                                                  >  2:1631810/1‑127 (MQ=255)
                                                                                     ttCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGT‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAAAAAAAAAAAAATTTTGATAAAACAAAAATATAAAAAAAAAATTAAAAAAAAAAATTTATTTGAATTTaaaaaattaaaat                                           >  1:1008898/1‑119 (MQ=255)
                                                                                      tCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTTTTTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAATAAAATTAATATTTTTATAAAACAAAAATATTAAAAAAAAAATAAAAAAAATATTTTAATTTATTTTaaataattaata                                            >  2:6665303/1‑119 (MQ=255)
                                                                                      tCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGTT‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAATAAAAATAAGATTTGTATCAACCAAAAATATTTCAAAAAAATTAAAAAAAATATTTTAGTTTAGTTTCaaaaataaataa                                           >  2:4276505/1‑119 (MQ=255)
                                                                                      tCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTGT‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAATAAAATTAAGATTTGGTACAACCAAAAAAATAAAAAAAAAATTAAAAAAAATAGTTTTGTTTAGTTAAAAATATGCatata                                          >  1:293338/1‑128 (MQ=255)
                                                                                      tCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAATAAAATTAATATTTGGATCAACCAAAAATATATAAAAAAAATTAAAAAAAATTTTTTAGTTGAGTTTAAAAAATGCataaat                                         >  2:6776357/1‑128 (MQ=255)
                                                                                         aaGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATAAACCAAAACTATATCAAAAAAATTAAAAAAAATTGTTTATGTGAGTTTCAAAACTGAAGATATAGt                                      >  2:1326599/1‑128 (MQ=255)
                                                                                             gtATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTTTG‑‑TAAAAAAAAAATAAGATTTTGATAAACCAAACATATTTAAAAAAAATTAAAAAAAATTCTATACTGTATTTTAAAAAATGCATAAATAGTaaa                                   >  2:5370787/1‑126 (MQ=255)
                                                                                                    ttAGG‑‑C‑‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑AAAAATAAAAGTAAGATTTGGATAAACCAAAAATATTTAAAAAAAATTAAAAAAAATATTTTATTTTATTTTAAAATATGCAATTATATTAAAAAGTAAtt                           >  2:3309358/1‑128 (MQ=255)
                                                                                                     tAGG‑‑C‑‑‑TTGT‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAAGTAATATTTGGATCAACCAAATCTATATCATAAAAATTTATAAAAATATTTTAGTTTAGTTTCAAAAATTAAAATATTGTACaaaccatat                           >  2:4746514/1‑122 (MQ=255)
                                                                                                      aGG‑‑C‑‑‑TTGT‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATAAAAAAAATTAAAAAAAATATTTTTGTTGATTTTAAAAAGTGCATATATATTAAAAAGTAAttt                          >  2:3428947/1‑128 (MQ=255)
                                                                                                        gg‑‑C‑‑‑TTGT‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAAAAAAAGTAATATTTGGAAAAACCAAAAATATATAAAAAAAATTAAAAAAAATATATAATTTAAGTTAAAAATATAAATATAAAGTAAAAAGTAAttaa                         >  2:589/1‑126 (MQ=255)
                                                                                                           ttttttttttttttttttt‑‑ttttt‑‑ttttGT‑‑‑TTAATTTTTAGTAATATTTGGTTCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGa                              <  1:1365239/116‑1 (MQ=255)
                                                                                                            taggcttgtttttttttt‑‑ttttt‑‑tttttt‑‑‑AAAAAAAAAATTTATATTTGGAAAAACAAAAAATTTTTAAAAAAAATTAAAAAAAATTTTTTTTTTTTGTTTAAAAAATGCAAATAAATTACAAAGaaa                             >  2:6237154/12‑128 (MQ=255)
                                                                                                               ttttttttttttttt‑‑ttttt‑‑ttttGT‑‑‑AAAATTAAAATTAATATTTGGATAATAAAAAAATATATTAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAAttt                          <  1:4381004/120‑1 (MQ=255)
                                                                                                               ggcttgttttttttt‑‑ttttt‑‑tttttt‑‑‑AAAAATAAAATTAATATTTGGTACAACCAAAAATATTTAAAAAAAAATAAAAAAAATATTTTATTTTATTTTAAAAAATTCATATAAATAAAAAATGAAttt                          >  2:2863889/9‑128 (MQ=255)
                                                                                                               ggcttgttttttttt‑‑ttttt‑‑ttttGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATATTTATGTTTATTTTAAAAACTGGATAATTATTACAAATCAAttt                          >  2:2464961/9‑128 (MQ=255)
                                                                                                                tttttttttttttt‑‑ttttt‑‑ttttGT‑‑‑AAAATTAATAGTAAGATTTGGATCAACCAAAACTATATCAAAATAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                         <  2:1757694/121‑1 (MQ=255)
                                                                                                                tttttttttttttt‑‑ttttt‑‑ttttGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa                         <  2:7045568/121‑1 (MQ=255)
                                                                                                                 ttttttttttttt‑‑ttttt‑‑ttttGT‑‑‑TAATATAATAGTATGATTTGGATCAACCAAAATTATATGAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                        <  1:4546947/122‑1 (MQ=255)
                                                                                                                 ttttttttttttt‑‑ttttt‑‑ttttGT‑‑‑AAATATAAAAGTAAGATTTGGATAAACCAAAAATATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                        <  1:4175278/122‑1 (MQ=255)
                                                                                                                 ttttttttttttt‑‑ttttt‑‑ttttGT‑‑‑AAAAATTAAAGTAAGATTTGGATCAACAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt                        <  2:3686397/122‑1 (MQ=255)
                                                                                                                     gtttttttt‑‑ttttt‑‑tttttt‑‑‑AAAAATAAAATTAATATTTGGAACAACCAAAACTTTTTAAAAAAAAATAAAAAAAATATTTTTGTTTAGTTTCAAAAAAGCAAAAATAATAAAAAAGAAATTAttaaa                    >  2:1485868/3‑124 (MQ=255)
                                                                                                                      tttttttt‑‑ttttt‑‑tttttt‑‑‑AAAAAAAAAATTAAAATTTGTAAAAACCAAAAAAAAAAAAAAAAAATTAAAAAAAATATTTTTTTTTATTTTAAAATATTCATATAATTTACAAATGAAATTAttttaa                   >  1:1669948/2‑123 (MQ=255)
                                                                                                                      tttttttt‑‑ttttt‑‑ttttGT‑‑‑AAAATTAAAAGTAAGATTTGGATCAACTAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg                   <  1:6753959/127‑1 (MQ=255)
                                                                                                                       ttttttt‑‑ttttt‑‑ttttGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGa                  <  1:521547/128‑1 (MQ=255)
                                                                                                                         tttttt‑‑ttttt‑‑ttttGT‑‑‑TAAAATATATTTAAGATTTTGATATACAAAAAATATATTAAAAAAATTAAAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  1:607944/128‑1 (MQ=255)
                                                                                                                         tttttt‑‑ttttt‑‑ttttGT‑‑‑AAATATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  1:3736071/128‑1 (MQ=255)
                                                                                                                         tttttt‑‑ttttt‑‑ttttGT‑‑‑AAAAATAAAAGTATGATTTGGATCAACAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa                 <  1:3831933/128‑1 (MQ=255)
                                                                                                                          ttttt‑‑ttttt‑‑ttttGT‑‑‑AATATTTATAGTAAGATTTGGATAAAAAAATACTATATCAAAAATATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGaaa                <  1:4848872/128‑1 (MQ=255)
                                                                                                                                  tttt‑‑tttttt‑‑‑ATTATTTAAAGTAAGATTTGGATTAATCAATACTATATCAAAAAAATTAAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATg          <  1:77734/128‑1 (MQ=255)
                                                                                                                                   ttt‑‑tttttT‑‑‑AAAAATAAAATTAAGATTTGGTTCAACCAAAAATATATAAAAAAAATTAAAAAAAATTGTTTTTTTGATTTTAAAATCTGAATATATTGTAAAAAGTAATATTTGAAAAAAAAAAAttt         >  2:357349/1‑126 (MQ=255)
                                                                                                                                   ttt‑‑ttttGT‑‑‑AAAAATAAAAGTAAGATTTTGATCATAAAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATgg         <  1:2648231/128‑1 (MQ=255)
                                                                                                                                    tt‑‑ttttGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAAATATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGa        <  1:5680247/128‑1 (MQ=255)
                                                                                                                                     t‑‑tttttT‑‑‑AAAAAAAAAAGTAATATTTGGATAAAACAAAACTTAATAAAAAAAATTAAAAAAAATATTTTTGTTTTTTTTAAAATATGAATAATTATTAATAAAGATTTTATTATAGaaaaaaaatgat       >  1:3661951/1‑123 (MQ=255)
                                                                                                                                         ttttT‑‑‑AAAAATAAAATTAAGATTTGGATAAACCAAAAATTTATAAAAAAAATTAAAAAAAATTGTTTTTTTTATTTTCAAATCTTCATATATATTACAAAGGAATTTATTATTGAAAAAAATGGATTa     >  2:5784255/1‑128 (MQ=255)
                                                                                                                                          ttGT‑‑‑ATAAATAATAGTAAGATTTGGATCAATTAAAACTATATCAAAAAAATTATAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGTAATTTATGATAGAAAAAAATGGATTat    <  2:123452/128‑2 (MQ=255)
                                                                                                                                          ttGT‑‑‑AATAATAAAAGTAAGATTTGGATAAACCAAAACTATATAAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  2:6966173/128‑1 (MQ=255)
                                                                                                                                          ttGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat    <  1:6537539/128‑2 (MQ=255)
                                                                                                                                          ttGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg    <  2:6328246/128‑1 (MQ=255)
                                                                                                                                           tGT‑‑‑AAAAATAAAAGTTAGATTTGGATCAAACAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGt   <  1:7116894/128‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                       
AAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTAGG‑‑C‑‑‑TTG‑‑‑‑TTTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑AAAAATAAAAGTAAGATTTGGATCAACCAAAACTATATCAAAAAAATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT  >  CP016816/203787‑204039

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: