Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP016816 | 203,912 | 0 | G | T | 46.6% | 689.4 / inf | 891 | intergenic (+296/+162) | JCVSYN2_00845/JCVSYN2_00850 | lipoprotein/inorganic diphosphatase |
Reads supporting (aligned to +/- strand): ref base G (144/323); new base T (407/0); total (568/323) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 0.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 967 total aligned reads displayed.
AAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT > CP016816/203787‑204039 | aataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACTCTTTCAAATTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑t‑aaa > 1:6254232/1‑128 (MQ=255) aataaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGATCTATGCTTTTTATTAAACATATCAACATAACAAAGCTTTCAAAGAGTATTTTTTA‑TA‑‑C‑‑‑TTG‑‑‑‑TATTTATT‑‑TTTTT‑‑TTTTAT‑‑‑a‑aa > 2:2176141/1‑128 (MQ=255) aaaaatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTCTGTTCTAGGTTTTTTATTATACTTAACAACATTAACACCCTTTAAAAGTTTATTTTTTA‑GG‑‑C‑‑‑TTT‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATa < 2:3137311/128‑1 (MQ=255) aaaatTTTTTATTTTAAGCCATTTTTAAAAAAGCCTTAGTTTTAGGCTTTTTATTATAATTATCAAAATTACAACGCTTTCAAATTTTTTTTTTTA‑GG‑‑G‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATa < 1:5566003/128‑1 (MQ=255) aatTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTATAGGCTTTTTATTATACTAATCAACATTACAACGCTTTCAAATTGTAGATTTTA‑GC‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTTTGTTTTTT‑‑‑A‑AAAAtta > 1:5742802/1‑126 (MQ=255) ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAAg > 2:6465565/1‑128 (MQ=255) ttttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAAGTa > 2:3977376/1‑128 (MQ=255) ttCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑T‑AAAATAAAAGTa > 2:5455725/1‑128 (MQ=255) tattttAACTCCATTTTTAAAAAACCCATTTTTCTATCCTTTTTTTTATAATTATAAAAAATAAAACGCTTTAAAAGTGTTTTTTTTT‑GG‑‑CTTTTTT‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTa < 1:7189515/125‑1 (MQ=255) aTTAAAATCAATTTTAAATAAATCATATGTTATTGGGTTTTTATTATAATTATTAAAATTAAAACCTTTTAAAATTTTATTTTTTA‑GGTTT‑‑‑TTT‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGa < 1:6418285/128‑1 (MQ=255) tAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAATTA‑AGA‑tt > 2:4110948/1‑128 (MQ=255) aaGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTTTT‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑ttt > 1:6638612/1‑128 (MQ=255) ataaaTTTTTAAAAAATCCTTTGTTTTTGGTTTTTTATTATACTTATAAAAATATCAACGCTTTAAAAGTGTTTTTTTTA‑TG‑‑C‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTgg < 2:866926/124‑1 (MQ=255) gCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAATTA‑ATA‑TTTGGAt > 2:5518044/1‑128 (MQ=255) cATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AAA‑ttttgttc > 2:6537918/1‑123 (MQ=255) aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGAtaatc > 2:3073090/1‑124 (MQ=255) aTTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAATA‑ATA‑tttttataaac > 2:4885420/1‑120 (MQ=255) ataataaaaaGCCTAGATCATAGGCTTTTTATTATACTTATCAACATTAAAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑TTA‑TTTGGTTCAGcc > 2:4447604/6‑128 (MQ=255) aaaGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAATTA‑AGA‑TTTGGTTAAACC‑AAAAAta > 1:2433460/1‑128 (MQ=255) aaGCCTATTTTCTAGGCTTTTTATTATACTTATAAAAATTACAACGCTTTCAAATTTTTTTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACtat < 1:5790074/128‑1 (MQ=255) gCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAAATA‑AGA‑TTTGGATCAACC‑AAAAcattat > 1:3174450/1‑123 (MQ=255) cTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTT‑‑T‑‑‑A‑AAAATAAAAGTA‑ATA‑TTTGGTAAAACC‑AAAAATATTTaaaaaa > 2:5080967/1‑128 (MQ=255) tATGTTTTAGGGTTTTTATTATACTTATCAAAATTACAACTCTTTCAAATTGTTTTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCaaa < 1:546420/128‑1 (MQ=255) gTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑ATAAAAAAAAAATA‑AAT‑TTTGTTTAAACC‑AAAACTATaaaaaaaa > 1:4709335/1‑128 (MQ=255) ttCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTTTATTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAATTA‑ATA‑TTTTAATAAAAC‑AAAAATATATAaaaaa‑a > 2:3860302/1‑128 (MQ=255) acatAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑‑‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGAAAAAAC‑AAAAATATATCAAAAA‑AAtt > 1:115989/4‑128 (MQ=255) tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAAATA‑ATA‑TTTTGA‑AAAAC‑AAAAAAATATaaaaaa‑aaa > 2:5248503/1‑127 (MQ=255) tCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAATTT‑ATA‑TTTTGATCAACC‑AAAACATTTTCaaaaa‑aa > 2:568338/1‑128 (MQ=255) tCTAGGCTGTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTTA‑‑A‑AAAAAAAAATTA‑ATA‑TTTGGCTCGCCC‑AAAACTATATCAAAAA‑AAt > 2:2764565/1‑128 (MQ=255) catAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAATTT‑TTA‑TTTGTTTAAAAC‑AAAAATATATCaaaaa‑aa > 2:822118/3‑128 (MQ=255) atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑T‑AAAATAAAATTA‑AAA‑TTTGAATCAAAC‑AAAACTAAAAAAAAAA‑AAtt > 1:6181697/2‑128 (MQ=255) atAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑ATC‑TTTGGAAAAACC‑AAAACATAAACAAAAA‑AAtt > 2:7143033/2‑128 (MQ=255) aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑ATT‑TTTTTAAAAACC‑AAAAATATAAAAAAAA‑AATTa > 1:2114607/1‑128 (MQ=255) aGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAAAAAAATAA‑ATA‑TTTTTATAAACA‑AAAAATAAAAAAAAAA‑AAtaa > 2:1934839/1‑126 (MQ=255) aGGCGTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑T‑AAAAAAAAATAA‑AAA‑TTAGGTTACACC‑AAAACTAAAGAAAAAA‑AAtat > 1:6991374/1‑126 (MQ=255) ttattaTACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAAATA‑ATA‑ATTTTTAAAAAC‑AAAAAAAAATTAAAAA‑AATTaaaaaaaaaa > 2:1857141/1‑126 (MQ=255) ttataattataaAAATTAAAACTCTTTAAATTTTTTTTTTTTT‑GG‑‑G‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAAta < 1:855429/128‑1 (MQ=255) ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAATTA‑ATA‑TTTTGATAAAAA‑AAAAAAATATAAAAAA‑AATTaaaaaaaaaa > 2:1036203/1‑126 (MQ=255) ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑T‑AAAAAAAAAATATATA‑TTTTTGTAAAAC‑AAAACTATTTATAAAA‑AATTAAAAAAAAtt > 1:500676/1‑127 (MQ=255) ttatACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAATTA‑ATA‑TTTTGATCAACA‑AAAACAAAataaaaaa‑aaataaaaaaaaaaa > 2:3774730/1‑125 (MQ=255) tataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTTTTAA‑AAAAAAAAAGTA‑AAA‑TTTTTATAAACC‑AAAAATATTTAAAAAA‑AATTTAAAAAAAtat > 2:2651847/1‑127 (MQ=255) ataCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑A‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTT‑‑T‑‑‑A‑AAAATAAAATTA‑AAT‑TTTTATTAAACA‑AAAAATATAAAAAAAA‑AATAAAAAAAAAaatattagt > 2:235441/1‑128 (MQ=255) actatttaaCATTCAAACGCTTTCAAATTTTATTTTTTT‑GG‑‑G‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAAtagtttag < 1:5924847/121‑1 (MQ=255) aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑AAA‑TTTTGTAAAAAC‑AAAAAAATTAAAAAAA‑AAATAAAAAAAAtaatttt > 2:6874489/1‑127 (MQ=255) aCTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAATAA‑ATT‑TTTGGAAAAAAA‑AAAAAAATTAAAAAAA‑AATTAAAAATAAaatttttg > 2:4579288/1‑126 (MQ=255) cTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑TAAATTAAATTA‑ATA‑TTTTGATAACAC‑AAAATTATATAAAAAA‑AATTaaaaaaaaattattat > 1:1764578/1‑120 (MQ=255) ttATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑T‑AAAAAAAAAATA‑ATATTTTTTAAAAACCAAAAAATATAAAAAAAA‑ATTAAAAAAAAAtattttt > 1:2304783/1‑127 (MQ=255) tATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGA‑‑‑A‑AAAAAAAAATTA‑ATT‑TTTGGATAAACA‑AAAACAATAAAAAAAA‑AATTAAAAAAAAtattttattt > 2:4363477/1‑128 (MQ=255) cAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAATTA‑AGA‑TTTTGATAAACC‑AAAAATATTTAAAAAA‑AAATAAAAAAAAtatttttattta > 1:7055389/1‑122 (MQ=255) cAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑AGA‑TTTGGATAAAAC‑AAAAAAAAATAAAAAA‑AATTAAAAAAAAtattttattatat > 2:6098047/1‑122 (MQ=255) aTTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTTTT‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTT‑ATA‑TTTGGAAAAACC‑AAAAATAAAAAAAAAA‑AATTAAAAAAAAtagtttttgtgattt > 1:6862174/1‑119 (MQ=255) aTTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTTTT‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑AAA‑TTTGGATAAACA‑AAAAATATAAAAAAAA‑AATTAAAAAAAAaagtttattttattt > 2:6431006/1‑123 (MQ=255) aTTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑AAT‑TTTTGTAAAACA‑AAAAATA‑ATAAAAAATAAATAAAAAAAAAAGTTAAATTGAGttt > 2:747786/1‑128 (MQ=255) aTTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑ATA‑TTTGGTTAAACC‑AAAAATATATAAAAAA‑AATTAAAAAAAAtattttagtttatttaaa > 2:5991292/1‑120 (MQ=255) aCAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAATTA‑ATA‑TTTTGATAAACC‑AAAAAAATTTAAAAAA‑AAATAAAAAAAAAATTTTATTTTAATTTaaaa > 2:1114178/1‑128 (MQ=255) aCAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAATTA‑ATA‑TTTGGAAAAACC‑AAAAAAATAAAAAAAA‑AAATAAAAAAAATATTTTATTAAATTTTCaaa > 1:6327201/1‑128 (MQ=255) aCAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑T‑AAAATAAATTTA‑AGA‑TTTGGATAAACA‑AAAAATTTTAAAAAAA‑ATTTAAAAAAAAtatttttgttttggtacaaagg > 1:1509632/1‑116 (MQ=255) cAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAAGTA‑AAA‑TTTTGTAAAACA‑AAAAATATATAAAAAA‑AATTAAAAAAAAAAATTTTCTTTAGttaaaaa > 1:3451556/1‑123 (MQ=255) aaaatttttAAAAGTTTTTTTTTTATGG‑‑T‑‑‑TTTT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAAt < 2:5614616/122‑1 (MQ=255) aCGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑T‑AAAATAAAATTA‑TAA‑TTTTTTTAAACC‑AAAAATATATAAAAAA‑AAATTAAAAAAATATTTTTATTGTTTTTAAAAta > 2:1631810/1‑127 (MQ=255) ttCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAAAAAAAAAA‑AAA‑TTTTGATAAAAC‑AAAAATATAAAAAAAA‑AATTAAAAAAAAAAATTTATTTGAATTTaaaaaattaaaat > 1:1008898/1‑119 (MQ=255) tCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTTT‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑ATA‑TTTTTATAAAAC‑AAAAATATTAAAAAAA‑AAATAAAAAAAATATTTTAATTTATTTTaaataattaata > 2:6665303/1‑119 (MQ=255) tCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGTT‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAAATA‑AGA‑TTTGTATCAACC‑AAAAATATTTCAAAAA‑AATTAAAAAAAATATTTTAGTTTAGTTTCaaaaataaataa > 2:4276505/1‑119 (MQ=255) tCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑AGA‑TTTGGTACAACC‑AAAAAAATAAAAAAAA‑AATTAAAAAAAATAGTTTTGTTTAGTTAAAAATATGCatata > 1:293338/1‑128 (MQ=255) tCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAATTA‑ATA‑TTTGGATCAACC‑AAAAATATATAAAAAA‑AATTAAAAAAAATTTTTTAGTTGAGTTTAAAAAATGCataaat > 2:6776357/1‑128 (MQ=255) aaGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATAAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATTGTTTATGTGAGTTTCAAAACTGAAGATATAGt > 2:1326599/1‑128 (MQ=255) gtATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTTG‑‑T‑AAAAAAAAAATA‑AGA‑TTTTGATAAACC‑AAACATATTTAAAAAA‑AATTAAAAAAAATTCTATACTGTATTTTAAAAAATGCATAAATAGTaaa > 2:5370787/1‑126 (MQ=255) ttA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTTT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATAAACC‑AAAAATATTTAAAAAA‑AATTAAAAAAAATATTTTATTTTATTTTAAAATATGCAATTATATTAAAAAGTAAtt > 2:3309358/1‑128 (MQ=255) tA‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑ATA‑TTTGGATCAACC‑AAATCTATATCATAAA‑AATTTATAAAAATATTTTAGTTTAGTTTCAAAAATTAAAATATTGTACaaaccatat > 2:4746514/1‑122 (MQ=255) a‑GG‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATAAAAAA‑AATTAAAAAAAATATTTTTGTTGATTTTAAAAAGTGCATATATATTAAAAAGTAAttt > 2:3428947/1‑128 (MQ=255) gg‑‑C‑‑‑TTGT‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAAAAAAAGTA‑ATA‑TTTGGAAAAACC‑AAAAATATATAAAAAA‑AATTAAAAAAAATATATAATTTAAGTTAAAAATATAAATATAAAGTAAAAAGTAAttaa > 2:589/1‑126 (MQ=255) ttttttttttttt‑tttttt‑‑ttttt‑‑ttttGT‑‑‑T‑TAATTTTTAGTA‑ATA‑TTTGGTTCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGa < 1:1365239/116‑1 (MQ=255) taggcttgtttt‑tttttt‑‑ttttt‑‑tttttt‑‑‑A‑AAAAAAAAATTT‑ATA‑TTTGGAAAAACA‑AAAAATTTTTAAAAAA‑AATTAAAAAAAATTTTTTTTTTTTGTTTAAAAAATGCAAATAAATTACAAAGaaa > 2:6237154/12‑128 (MQ=255) ttttttttt‑tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AAATTAAAATTA‑ATA‑TTTGGATAATAA‑AAAAATATATTAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTAAAATCTGCATATATAGTACAAAGGAAttt < 1:4381004/120‑1 (MQ=255) ggcttgttt‑tttttt‑‑ttttt‑‑tttttt‑‑‑A‑AAAATAAAATTA‑ATA‑TTTGGTACAACC‑AAAAATATTTAAAAAA‑AAATAAAAAAAATATTTTATTTTATTTTAAAAAATTCATATAAATAAAAAATGAAttt > 2:2863889/9‑128 (MQ=255) ggcttgttt‑tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATATTTATGTTTATTTTAAAAACTGGATAATTATTACAAATCAAttt > 2:2464961/9‑128 (MQ=255) tttttttt‑tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AAATTAATAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAT‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa < 2:1757694/121‑1 (MQ=255) tttttttt‑tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACA‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTa < 2:7045568/121‑1 (MQ=255) ttttttt‑tttttt‑‑ttttt‑‑ttttGT‑‑‑T‑AATATAATAGTA‑TGA‑TTTGGATCAACC‑AAAATTATATGAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt < 1:4546947/122‑1 (MQ=255) ttttttt‑tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AATATAAAAGTA‑AGA‑TTTGGATAAACC‑AAAAATATATAAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt < 1:4175278/122‑1 (MQ=255) ttttttt‑tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AAAATTAAAGTA‑AGA‑TTTGGATCAACA‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTAt < 2:3686397/122‑1 (MQ=255) gtt‑tttttt‑‑ttttt‑‑tttttt‑‑‑A‑AAAATAAAATTA‑ATA‑TTTGGAACAACC‑AAAACTTTTTAAAAAA‑AAATAAAAAAAATATTTTTGTTTAGTTTCAAAAAAGCAAAAATAATAAAAAAGAAATTAttaaa > 2:1485868/3‑124 (MQ=255) tt‑tttttt‑‑ttttt‑‑tttttt‑‑‑A‑AAAAAAAAATTA‑AAA‑TTTGTAAAAACC‑AAAAAAAAAAAAAAAA‑AATTAAAAAAAATATTTTTTTTTATTTTAAAATATTCATATAATTTACAAATGAAATTAttttaa > 1:1669948/2‑123 (MQ=255) tt‑tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AAATTAAAAGTA‑AGA‑TTTGGATCAACT‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAg < 1:6753959/127‑1 (MQ=255) t‑tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGa < 1:521547/128‑1 (MQ=255) tttttt‑‑ttttt‑‑ttttGT‑‑‑T‑AAAATATATTTA‑AGA‑TTTTGATATACA‑AAAAATATATTAAAAA‑AATTAAAATAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa < 1:607944/128‑1 (MQ=255) tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AATATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa < 1:3736071/128‑1 (MQ=255) tttttt‑‑ttttt‑‑ttttGT‑‑‑A‑AAAATAAAAGTA‑TGA‑TTTGGATCAACA‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGaa < 1:3831933/128‑1 (MQ=255) ttttt‑‑ttttt‑‑ttttGT‑‑‑A‑ATATTTATAGTA‑AGA‑TTTGGATAAAAA‑AATACTATATCAAAAA‑TATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGAATATATAGTACAAAGGAATTTATGATAGaaa < 1:4848872/128‑1 (MQ=255) tttt‑‑tttttt‑‑‑A‑TTATTTAAAGTA‑AGA‑TTTGGATTAATC‑AATACTATATCAAAAA‑AATTAAAAATAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATg < 1:77734/128‑1 (MQ=255) ttt‑‑tttttT‑‑‑A‑AAAATAAAATTA‑AGA‑TTTGGTTCAACC‑AAAAATATATAAAAAA‑AATTAAAAAAAATTGTTTTTTTGATTTTAAAATCTGAATATATTGTAAAAAGTAATATTTGAAAAAAAAAAAttt > 2:357349/1‑126 (MQ=255) ttt‑‑ttttGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTTGATCATAA‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATgg < 1:2648231/128‑1 (MQ=255) tt‑‑ttttGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAAATATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGa < 1:5680247/128‑1 (MQ=255) t‑‑tttttT‑‑‑A‑AAAAAAAAAGTA‑ATA‑TTTGGATAAAAC‑AAAACTTAATAAAAAA‑AATTAAAAAAAATATTTTTGTTTTTTTTAAAATATGAATAATTATTAATAAAGATTTTATTATAGaaaaaaaatgat > 1:3661951/1‑123 (MQ=255) ttttT‑‑‑A‑AAAATAAAATTA‑AGA‑TTTGGATAAACC‑AAAAATTTATAAAAAA‑AATTAAAAAAAATTGTTTTTTTTATTTTCAAATCTTCATATATATTACAAAGGAATTTATTATTGAAAAAAATGGATTa > 2:5784255/1‑128 (MQ=255) ttGT‑‑‑A‑TAAATAATAGTA‑AGA‑TTTGGATCAATT‑AAAACTATATCAAAAA‑AATTATAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGTAATTTATGATAGAAAAAAATGGATTat < 2:123452/128‑2 (MQ=255) ttGT‑‑‑A‑ATAATAAAAGTA‑AGA‑TTTGGATAAACC‑AAAACTATATAAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg < 2:6966173/128‑1 (MQ=255) ttGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTat < 1:6537539/128‑2 (MQ=255) ttGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAg < 2:6328246/128‑1 (MQ=255) tGT‑‑‑A‑AAAATAAAAGTT‑AGA‑TTTGGATCAAAC‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGt < 1:7116894/128‑1 (MQ=255) | AAAAATAAAAATTTTTCATTTAAAGCCATTTGTAAAAAAGCCTATGTTCTAGGCTTTTTATTATACTTATCAACATTACAACGCTTTCAAAGTGTATTTTTTA‑GG‑‑C‑‑‑TTG‑‑‑‑T‑TTTTTT‑‑TTTTT‑‑TTTTGT‑‑‑A‑AAAATAAAAGTA‑AGA‑TTTGGATCAACC‑AAAACTATATCAAAAA‑AATTAAAAAAAATAGTTTAGTTGAGTTTCAAATCTGCATATATAGTACAAAGGAATTTATGATAGAAAAAAATGGATTAGTT > CP016816/203787‑204039 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |