Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP016816202,4770CA46.0% 511.0 / 263.7 635intergenic (+255/‑420)JCVSYN2_00840/JCVSYN2_00845hypothetical protein/lipoprotein
Reads supporting (aligned to +/- strand):  ref base C (200/136);  new base A (91/195);  total (297/338)
Fisher's exact test for biased strand distribution p-value = 5.36e-12
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 706 total aligned reads displayed.

AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATA  >  CP016816/202350‑202606
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aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAAc                                                                                                                                      <  1:2546847/128‑1 (MQ=255)
aagtaGTGAAGTTAGTGTAAATAATAGAGTTAAGGATAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAAc                                                                                                                                      <  2:7061045/128‑1 (MQ=255)
 agtagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACa                                                                                                                                     <  2:2200945/128‑1 (MQ=255)
 agtagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACa                                                                                                                                     <  2:3283617/128‑1 (MQ=255)
   tagtGAAGTTAGTGTTAATAATAGAGGTAAGGTTAATTAAAATACCATAAACTTATTAAGTCTAATAATGTAGATCCTGGGGTTCTATTTTTTTTTTTGTTTATGTTCAC‑AATT‑AATAAAAAAACAAt                                                                                                                                   <  1:1010386/128‑1 (MQ=255)
   tagtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATTCCATAAACTTAATAATTCTAATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAt                                                                                                                                   <  2:5532719/128‑1 (MQ=255)
   tagtGAAGGTAGTGTAAATAATAGATTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAt                                                                                                                                   <  1:2056040/128‑1 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAATGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATc                                                                                                                                  <  2:1747082/128‑1 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATc                                                                                                                                  <  2:6102639/128‑1 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTAAC‑AAAT‑AAAAAAAAAAAAATc                                                                                                                                  >  2:6628165/1‑128 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTAGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATc                                                                                                                                  >  1:3859557/1‑128 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTAATATGTTTATATTAAA‑AAAT‑Aaaaaaaaaaaaaaa                                                                                                                                  >  1:481851/1‑126 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCATATAATTTAGATCCTCTTTAACTATATAAATATAACTATATCTTCAC‑AAAT‑AAAAAAAAAACAATc                                                                                                                                  >  2:4020980/1‑128 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATACTTATAATATATATAATATTAATCTATTTTTTTATTTATTTATATAAAA‑AAAT‑Aaaaaaaaaaaaaaa                                                                                                                                  >  1:4444707/1‑126 (MQ=255)
    agtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATAACATAAACTTAATAATTATTATAATATATATCAACTAAATCTATATTATTATTATATAATCATaaa‑aaaa‑aaaaaaaaaaaaaaa                                                                                                                                  >  1:4344944/1‑126 (MQ=255)
    agattttttAGTTTAAATAATAGAGT‑‑AGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATccc                                                                                                                                <  2:5957435/121‑1 (MQ=255)
     gttaatttattttAAATAATAGATTAAAGTTTAATTAAAATAACTTAATCTTTATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATcc                                                                                                                                 <  1:6744755/116‑1 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATcc                                                                                                                                 <  2:803583/128‑1 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATcc                                                                                                                                 <  1:6984673/128‑1 (MQ=255)
     gtGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCATCGTGATCTATTTTTTTATTTTTTTATCTTCAC‑AAAT‑Aaaaaaaaaaaaaaaa                                                                                                                                 >  1:2369185/1‑125 (MQ=255)
      tGAAGTTAGTTTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATccc                                                                                                                                <  1:1529809/128‑1 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTTTTTATATTCAC‑AAAT‑AAAAAAAAAACAATccc                                                                                                                                >  2:6956418/1‑128 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTTATCTATTTTTTTATTTGTTTAACTTCAC‑AAAT‑Aaaaaaaaaaaaaaacc                                                                                                                                >  1:6896943/1‑124 (MQ=255)
      tGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTATTAAAATTAATATACTCATAATCTAAATTTATATTTTTTAATCTTAAC‑Aaaa‑aaaaaaaaaaaaaaaca                                                                                                                                >  1:1349434/1‑124 (MQ=255)
       gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATcccc                                                                                                                               >  2:6748334/1‑128 (MQ=255)
       gAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATcacc                                                                                                                               >  2:5619387/1‑128 (MQ=255)
         aGTTATTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAAATTAATAATTATAATAATATAAAAAAACTTAATCTATTATATTATTATATTATCTTCAC‑AAAT‑AAAAAAAAAACaaacaaaaa                                                                                                                             >  1:463278/1‑121 (MQ=255)
         aGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACaaacacatt                                                                                                                             >  1:6282886/1‑121 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTGATCTATTTTTTTATATATTAATCTTAAA‑AAAT‑Aaaaaaaaaaaaaaaaaaaaa                                                                                                                            >  1:218305/1‑120 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTAAATAAAA‑AAAA‑AAAAAAAAAAAAAcccataaa                                                                                                                            >  1:1639795/1‑123 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACaaaacactta                                                                                                                            >  1:844228/1‑120 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAt                                                                                                                                   >  2:2754483/1‑121 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATATTCAC‑AAAT‑AAAAAAAAAACAAACACCtta                                                                                                                            >  1:791753/1‑127 (MQ=255)
          gTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATATAGATCCTCGTGATCTATTTTTTAATTTCTTAATATTCAC‑AAAT‑AAAAAAAAAAAAATccaatta                                                                                                                            >  2:6316697/1‑123 (MQ=255)
            tAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTAATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCttaaa                                                                                                                          >  1:7130488/1‑125 (MQ=255)
             aGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTATAATATATTAATCTTAAC‑AAAT‑AAAAAAAAAACAAtaaactaaaaa                                                                                                                         >  2:2628119/1‑118 (MQ=255)
              gtgtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCCTCGTGATCTATATTTTTAATTGTTAATATTAAA‑AAAT‑AAAAAAAAAACaaaaaaaataaaaa                                                                                                                        >  2:685888/1‑116 (MQ=255)
                gtAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCtaaaaaaat                                                                                                                      >  1:1738215/1‑120 (MQ=255)
                   aataatAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAA‑AAAT‑AAAAAAAAAACAAAACCCttaaaaattaaa                                                                                                                   >  1:5524224/1‑118 (MQ=255)
                     taataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTCTTTATCTTCAC‑AAAT‑AAAAAAAAAACAAACCCC‑‑ttaaa‑aattaaaaa                                                                                                              >  1:6611572/1‑128 (MQ=255)
                      aataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCACC‑‑Ttaaa‑aattaaaaaa                                                                                                             >  1:5807475/1‑128 (MQ=255)
                       ataGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑‑AAAAAAAAACAAAACC‑‑ATTAAA‑AATTaaaaaaaa                                                                                                           >  1:3293296/1‑128 (MQ=255)
                        taGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTTTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCAC‑‑TTAAA‑AATTaaaaaaat                                                                                                           >  1:3410534/1‑127 (MQ=255)
                            gTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGAGATCTATTATTTTATTTTTTTATATTCAC‑AAAT‑AAAAAAAAAACAATACACTaaaaaa‑aaaaaaaaaaaaaa                                                                                                         >  1:4960526/1‑128 (MQ=255)
                              tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCAC‑‑TAAAA‑AAATaaaaaaaaaaaaa‑a                                                                                                    >  2:6500030/1‑128 (MQ=255)
                              tAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATAACC‑‑‑TAAA‑AAATtaaaaaaaaaaaa‑aa                                                                                                   >  1:6241494/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTATATCAAAGTGATCTAATTATAAATATAAATATATTAAA‑AAAA‑AAAAAAAAAAAAAT‑‑AAAATTAAA‑AAATaaaaaaaaaaaaa‑aa                                                                                                   >  1:3539003/1‑128 (MQ=255)
                               aaGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCAC‑‑‑AAAAA‑AAATtaaaaaaaaaaaa‑aaa                                                                                                  >  1:3794437/1‑128 (MQ=255)
                                agtttaattaaATAACCATAATATTAATAATTATTAATATTTATAACCTCTTGATATATTTTTTTATTTTTTTATATTAAA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTaaaaaaaaaaaaa‑aaa                                                                                                  <  2:4766516/125‑1 (MQ=255)
                                  tgaaataaaAAAAACATAAAATAAAAAATTCTTAAAATTTACTTCCCCGGGATTATTTTTTTTTTTTTTTTAAATTAAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑‑TAAA‑AAATtaaaaaaaaaaaa‑aaaaaa                                                                                               <  1:3639462/125‑1 (MQ=255)
                                  gTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATACTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAA‑‑AACAATTAAA‑AATTaaaaaaaaaaaaa‑aaaaa                                                                                                >  2:3541019/1‑128 (MQ=255)
                                   ttaattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCTTTATCTATTTTTTTATTTATTTATCTTCAC‑AAAT‑AAAAAAAAAAAAAT‑‑ACAATTAAA‑AAATaaaaaaaaaaaaa‑aaaaaa                                                                                               >  1:2934717/1‑128 (MQ=255)
                                    taattaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAATCACC‑‑‑TAAA‑AAATtaaaaaaaaaaaa‑aaaaaaaa                                                                                             >  2:6167981/1‑128 (MQ=255)
                                     aattaaAATACCATAAACTTAATAATTATT‑TAATGTAGATCATCTTTATCTATTTTTTTATTTTTTTATCTTCAA‑AAAT‑AAAAAAAAAAAAAAACAC‑‑TAAAA‑AATTaaaaaaaaaaaaa‑aaaaaaaaa                                                                                            >  2:1916638/1‑127 (MQ=255)
                                      attaaAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTAATTT‑TTTATAATCAC‑AAAA‑AAAAAAAAAACAAAACCC‑‑AAAAA‑AAATaaaaaaaaaaaaa‑aaaaaaaaaa                                                                                           >  1:5497160/1‑126 (MQ=255)
                                       ttaaAATAAAAAAAAATAAAAAATAATTAAAATTAATATACTCGTTATTTATTTTTTTATTTTTTTATATTAAA‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaa‑aaaaaaaaac                                                                                           <  2:38583/128‑3 (MQ=255)
                                       ttaaAAAAACATAAACTTAATAATTATTAATATTTATTTCCTCGTGATCTATTTTTTTTTTTTTTTATCTTAAC‑AAAA‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTaaaaaaaaaaaaa‑aaaaaaaaac                                                                                           <  2:4332857/128‑3 (MQ=255)
                                        taaAATACAATAAAAATAATAATTATTATAATTTAAATCCTATTGATATATTTTTTTATTTTTTTATAATAAA‑AAAA‑AAAAAAAAAACAAACCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAA‑AAAAAAAACTaa                                                                                         <  2:1262532/128‑1 (MQ=255)
                                          aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAATCACC‑‑TTAAA‑AATTaaaaaaaaaaaaa‑aaaaaaaaaaaaa                                                                                        >  2:5692697/1‑123 (MQ=255)
                                          aaaTACCATAAACTTAATAATTCTTATAATGTAGATCCTAGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCACC‑‑TTAAA‑AAATaaaaaaaaaaaaa‑aaaaaaaaaaaaa                                                                                        >  1:3151882/1‑123 (MQ=255)
                                           aaTACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AATTAaaaaaaaaaaaa‑aaaaaaaaaaaaaa                                                                                       >  2:3633333/1‑128 (MQ=255)
                                              aCCATAAAATTAAAAATTATTTTAATGTTGATACGTTTTATTTATTTTTTTTTTTTTTTATTTTCAC‑AAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AAATAAAAAAAAAAAAA‑AAAAAAAACTAAaaaca                                                                                    <  1:4020980/128‑1 (MQ=255)
                                               caaaaaaaTTAATAATATTTATAATTTATAATCACTTTTTATATTTTTTTTTTTGTTTATATTCAA‑AAAT‑AAAAAAAAAAAAAAACCC‑TTAAAA‑ATTAAAAAAAAAAAAAA‑AAAAAAAACTAAaaaca                                                                                    <  2:6357242/124‑1 (MQ=255)
                                               aaaTAAAATTAATAATTATTATAATTTAATAAATTCTTATATATTTTTTTAATTTTTTAAATTAAA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AATTAAAAAAAAAAAAA‑AAAAAAAACTAAaaacaa                                                                                   <  2:2363935/126‑1 (MQ=255)
                                                caaaaaCTTAATAATTAATAAAATTTATAATCACGTTATATAATTTTTTATTTTTTTATATTAACAAAAA‑AAAAAAAAAACAAACCCC‑TTAAAA‑ATTAAAAAAAAAAAAAA‑AAAAAAAACTAAaaaca                                                                                    <  2:4438101/125‑1 (MQ=255)
                                                cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATc                                                                                                                                  >  1:5271015/1‑84 (MQ=255)
                                                cATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCTTAAAAA‑TTAAAAAAAAAAAAAAA‑AAAAAAAAATaaaaaaa                                                                                    >  1:6095680/1‑126 (MQ=255)
                                                 aTAAAATTAATAATTTTTTTTATTTATTTCCTCTTGTTCTATTTTTTTATTTTTTTATTTTTAA‑AAAT‑AAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑TAAAAAAAAAAA‑AAAAAAAACTAAAAACAAActc                                                                               <  1:5851356/128‑1 (MQ=255)
                                                 aTAAAAATAATAATTCTTAAAATGTTGTTCCTGGTGATTAATTTTTTTATTTGTTTATTATTAC‑AAAA‑AAAAAAAAAAAAATGCCC‑‑TTAAA‑AAATAAAAAAAAAAAAATAAAAAAAACTAAaaacaaa                                                                                  <  1:544623/128‑1 (MQ=255)
                                                   aaaaTTAATACTTCTTAAAAAGTACATCCTACTTTTATTTTTTTTTATTTTTTTAACATCAC‑AAAT‑AAAAAAAAAAACATCCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAActct                                                                              <  2:4538736/128‑1 (MQ=255)
                                                     aaataaaaaTTATTAAAATATAAATCCTAGTTTTTTATTTTTTAAATTTTTTAAAATAAA‑AAAA‑AAAAAAAAAAAAAACCC‑‑ATTAAA‑AAATAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTa                                                                             <  2:4173170/125‑1 (MQ=255)
                                                                       tttataTCCACCTGATATATTTTTTTATTTTTTTAAATTAAA‑AAAA‑AAAAAAAAAAAAAAACCC‑CATAAA‑AAATAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCta                                                            <  2:292629/123‑1 (MQ=255)
                                                                       gtttgATCCTCGTGTTATTTTTTTTTTTTTGTTTTTTTTCAA‑AAAA‑AAAAAAAAAAAAATCCCC‑‑‑TAAA‑AAATTAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtatt                                                          <  1:4124083/124‑1 (MQ=255)
                                                                         tatttCCTCGTTTTATATTTTTTTATTTTTTTATATTCA‑‑AAAA‑AAAAAAAAAAAAATACCC‑‑TTAAA‑AATTAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCtattat                                                        <  2:5481540/124‑1 (MQ=255)
                                                                               cctctgttattattttttaattttttaaATTAAA‑AAAT‑AAAAAAAAAAAAATCCCC‑‑TTAAA‑AAATAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑Ccac                                                  <  2:1509712/116‑1 (MQ=255)
                                                                               cTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAA‑AAAAAAAAAAAAAACAAAACTAAATTTATTAAAATACAATATTAAA‑caaa                                                  >  1:5720269/1‑125 (MQ=255)
                                                                               atcgttaaatatttttttattttttAATATTAAA‑AAAA‑AAAAAAAAAAAAATACC‑‑ATTAAA‑AATTAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑Ccac                                                  <  2:6026881/119‑1 (MQ=255)
                                                                                 tttatttatttttttttttttttTAT‑TTAAA‑AAAT‑AAAAAAAAAAAAATATCC‑‑TTAAA‑AATTTAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACatt                                               <  2:3369080/119‑1 (MQ=255)
                                                                                 cgttattttattttttttttttttATATTAAA‑AAAA‑AAAAAAAAAAAAATACCCTTAAAAA‑TTAAAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑Ccac                                                  <  2:304370/118‑1 (MQ=255)
                                                                                    tatattttttttttttttttttttttAAA‑AAAA‑TAAAAAAAAAAAATACAC‑TTAAAA‑TATAAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACattt                                              <  1:5991862/122‑1 (MQ=255)
                                                                                    gttatATTTTTTTATTTGTTTATATTAAA‑AAAT‑AAAAAAAAAACAAACCCC‑TAAAAA‑ATTAAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACattt                                              <  2:2051443/124‑1 (MQ=255)
                                                                                     atttatttttttattttttTATTTAAAT‑AAAA‑AAAAAAAAAAAAA‑‑ATCAAATAAA‑AAAT‑AAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACattttat                                           <  2:5411312/125‑1 (MQ=255)
                                                                                     aattATTTTTTTTTTTTTTTATATAAAA‑AAAA‑AAAAAAAAAAAAAAACCATTAAAAA‑TTAAAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACattt                                              <  1:6167981/125‑1 (MQ=255)
                                                                                         ttttttttatttttttttattAAA‑AAAA‑AAAAAAAAAAAAAAACAC‑TTAAAA‑ATTAAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACattttattt                                         <  1:1916638/127‑1 (MQ=255)
                                                                                         aTTTTTTTATTTGTTTATCTTCAC‑AAAT‑‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAA‑AAAAAAAA‑TAAAAAAAAAATCTATTTATAAAAATTCAAAAATAAA‑ACAAATTTTATTTTTa                                      >  1:6447751/1‑128 (MQ=255)
                                                                                          tttttttatttttttaTCTT‑AA‑AAAA‑AAAAAAAAAAAAATCACC‑‑TTAAA‑AAATAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACATTTTATTTTTa                                      <  1:5636304/128‑1 (MQ=255)
                                                                                          tttttttatttttttaT‑AAAAA‑AAAA‑AAAAAAAAAAAAAACCCCTAAAAAA‑TAAAAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACattttatttt                                        <  2:1409502/128‑1 (MQ=255)
                                                                                          tttttatATTT‑TTTATCTTCAC‑AAAA‑AAAAAAAAAAAAATAAC‑‑ATTAAA‑AATTAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACATTTTATTTTTa                                      <  2:5059144/128‑1 (MQ=255)
                                                                                           ttttttttttttttATATT‑AA‑AAAA‑AAAAAAAAAAAAAAAACCATTAAAA‑ATTAAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACATTTTAttttt                                       <  1:7029607/128‑1 (MQ=255)
                                                                                              tttatttttttattttAAA‑AAAT‑AAAAAAAAAAAAATAAACTTT‑‑‑A‑AAAT‑TAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACATTTTATTTTTAAAATa                                 <  1:2686375/128‑1 (MQ=255)
                                                                                                 aTTTTTTTATATT‑AA‑AAAA‑AAAAAAAAAAAAAACCCC‑‑TTAAA‑AATAAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACATTTTATTTTTAAAATAAg                               <  2:242526/128‑1 (MQ=255)
                                                                                                   ttttttATATTAAC‑AAAT‑AAAAAAAAAACAATACCC‑‑TTAAA‑AAATAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACATTTTATTTTTAAAATAAGa                              <  2:493354/125‑1 (MQ=255)
                                                                                                   ttGTTTATCTTCAC‑AAATAAAAAAAAAAACAATCCCCTT‑‑‑AA‑AAAT‑‑TAAAAAAAAAA‑AAAAAAAAGTAAAAACAAAAACTATTTATAAAAATGCCCTA‑TATATCAAAATTTTATTTTTAAtatattatt                            >  2:5851071/1‑123 (MQ=255)
                                                                                                      tttATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAA‑AAAAAAAAATAAAAAAAAACTCTTTTATTTAAAATAACAAATTATA‑CAAAATTTTATTTTTAAAATaataatt                           >  1:6374040/1‑123 (MQ=255)
                                                                                                      tttATATTCAA‑AAAT‑AAAAAAAAAAAAAACCCCTT‑‑‑AA‑AAATTAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACATTTTATTTTTAAAATAAGATAtt                          <  2:5793983/128‑1 (MQ=255)
                                                                                                        tatttttaaaaaaT‑AAAAAAAAAAAAATACC‑‑ATTAAA‑AATTAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCACTATTATA‑CCACATTTTATTTTTAAAATAAGATAtt                          <  2:5250119/118‑1 (MQ=255)
                                                                                                         ttatttaaaaaaa‑aaaaaaaaaaaaATACCCTTAAAAATAAAAAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACATTTTATTTTTAAAATAAGata                            <  1:915778/119‑1 (MQ=255)
                                                                                                           cTTCAC‑AAAT‑‑AAAAAAAAACAATCCCC‑‑TTAAA‑AATTAAAAAAAAAAAAA‑AAAAAAAA‑AAAAAACAAAATATATTTATTAAAATTACAAATTTAA‑CCAAATTTTTTTTTTAAAAAAAAATATTGAAata                    >  2:6268826/1‑128 (MQ=255)
                                                                                                            attaaaaaaT‑AAAAAAAAAA‑AATAACCTTAAAAA‑TTAAAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACATTTTATTTTTAAAATAAGATATTGAc                       <  2:7221197/122‑1 (MQ=255)
                                                                                                                aaaaaa‑aaaaaaaaaaaaaaaaCCCTTAAAA‑ATTAAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACATTTTATTTTTAAAATAAGATATTGACata                    <  2:6435599/126‑1 (MQ=255)
                                                                                                                                 |                                                                                                                                    
AAGTAGTGAAGTTAGTGTAAATAATAGAGTTAAGGTTAATTAAAATACCATAAACTTAATAATTCTTATAATGTAGATCCTCGTGATCTATTTTTTTATTTGTTTATCTTCAC‑AAAT‑AAAAAAAAAACAATCCCCTTTTAAA‑AAATAAAAAAAAAAAAA‑AAAAAAAACTAAAAACAAACTCTATTTCTTAAAATTCCCTATTATA‑CCACATTTTATTTTTAAAATAAGATATTGACATAATATATATCTAATATATA  >  CP016816/202350‑202606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑