mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.26.0
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | change | freq | score | reads | annotation | genes | product | ||
| * | NC_000913 | 2,170,450 | 0 | G→T | 100.0% | 2.4 | 2 | R72L (CGT→CTT) | insE1 | IS3 transposase A |
| * | NC_000913 | 2,934,747 | 1 | .→T | 1.0% | 2.3 0.0 ‑0.4 | 193 | coding (513/1317 nt) | fucP | L‑fucose transporter |
| * | NC_000913 | 1,822,560 | 1 | .→A | 1.0% | 2.0 0.0 ‑0.8 | 191 | coding (103/828 nt) | nadE | NAD synthetase, NH3/glutamine‑dependent |
| * | NC_000913 | 3,762,552 | 0 | G→T | 100.0% | 1.9 | 2 | E124* (GAG→TAG) | rhsA | Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor |
| * | NC_000913 | 61,245 | 1 | .→T | 1.0% | 1.8 0.0 ‑0.2 | 210 | coding (2020/2907 nt) | rapA | RNA polymerase remodeling/recycling factor ATPase; RNA polymerase‑associated, ATP‑dependent RNA translocase |
| * | NC_000913 | 852,792 | 1 | .→A | 1.0% | 1.8 0.0 ‑0.6 | 194 | intergenic (‑195/+77) | opgE/mntS | OPG biosynthetic transmembrane phosphoethanolamine transferase/Mn(2)‑response protein, MntR‑repressed |
| * | NC_000913 | 4,188,820 | 2 | .→A | 1.1% | 1.8 0.0 ‑0.2 | 187 | coding (3471/4224 nt) | rpoC | RNA polymerase, beta prime subunit |
| * | NC_000913 | 2,657,848 | 1 | .→C | 1.1% | 1.7 0.0 ‑0.7 | 185 | coding (1088/1851 nt) | hscA | DnaK‑like molecular chaperone specific for IscU |
| * | NC_000913 | 3,592,842 | 1 | .→G | 1.1% | 1.7 0.0 ‑0.6 | 188 | coding (596/714 nt) | livF | branched‑chain amino acid ABC transporter ATPase |
| * | NC_000913 | 4,188,820 | 1 | .→G | 1.1% | 1.5 0.0 ‑0.5 | 187 | coding (3471/4224 nt) | rpoC | RNA polymerase, beta prime subunit |
| * | NC_000913 | 1,017,162 | 1 | .→A | 1.0% | 1.4 0.0 ‑0.2 | 193 | coding (1138/1761 nt) | ycbZ | putative peptidase |
| * | NC_000913 | 3,620,796 | 0 | T→G | 100.0% | 1.3 | 1 | R535R (CGT→CGG) | rhsB | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913 | 3,425,006 | 0 | A→G | 100.0% | 1.2 | 3 | noncoding (1778/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 417,535 | 1 | .→T | 1.0% | 1.1 0.0 ‑0.2 | 200 | coding (394/690 nt) | phoB | response regulator in two‑component regulatory system with PhoR |
| * | NC_000913 | 2,726,974 | 0 | T→C | 100.0% | 1.1 | 2 | noncoding (2211/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| * | NC_000913 | 2,726,982 | 0 | A→C | 100.0% | 1.1 | 2 | noncoding (2203/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| * | NC_000913 | 2,727,111 | 0 | A→C | 100.0% | 1.1 | 2 | noncoding (2074/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| * | NC_000913 | 2,727,186 | 0 | G→T | 100.0% | 1.1 | 2 | noncoding (1999/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| * | NC_000913 | 3,424,959 | 0 | A→C | 100.0% | 1.1 | 1 | noncoding (1825/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,425,074 | 0 | C→G | 100.0% | 1.1 | 3 | noncoding (1710/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,334,022 | 1 | .→C | 1.1% | 1.1 0.0 ‑0.2 | 181 | coding (1569/1644 nt) | eptA | lipid A phosphoethanolamine transferase |
| * | NC_000913 | 3,424,966 | 0 | A→C | 100.0% | 1.0 | 1 | noncoding (1818/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,424,988 | 0 | A→T | 100.0% | 1.0 | 2 | noncoding (1796/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 4,188,820 | 3 | .→A | 1.1% | 1.0 0.0 ‑0.1 | 187 | coding (3471/4224 nt) | rpoC | RNA polymerase, beta prime subunit |
| * | NC_000913 | 2,727,159 | 0 | A→C | 100.0% | 0.9 | 2 | noncoding (2026/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| * | NC_000913 | 3,424,983 | 0 | T→G | 100.0% | 0.9 | 1 | noncoding (1801/2904 nt) | rrlD | 23S ribosomal RNA of rrnD operon |
| * | NC_000913 | 3,515,472 | 1 | .→C | 1.0% | 0.9 0.0 ‑0.1 | 202 | coding (442/837 nt) | dam | DNA adenine methyltransferase |
| * | NC_000913 | 2,727,157 | 0 | A→C | 100.0% | 0.8 | 2 | noncoding (2028/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| * | NC_000913 | 2,727,168 | 0 | A→C | 100.0% | 0.8 | 2 | noncoding (2017/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| * | NC_000913 | 2,727,152 | 0 | T→A | 100.0% | 0.7 | 2 | noncoding (2033/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| * | NC_000913 | 3,187,140 | 0 | T→G | 100.0% | 0.7 | 3 | F211V (TTC→GTC) | insD1 | IS2 transposase TnpB |
| * | NC_000913 | 3,259,897 | 1 | .→G | 1.1% | 0.7 0.0 ‑0.1 | 186 | coding (214/390 nt) | tdcF | putative reactive intermediate deaminase |
| * | NC_000913 | 4,209,444 | 0 | T→G | 100.0% | 0.7 | 1 | noncoding (1298/1542 nt) | rrsE | 16S ribosomal RNA of rrnE operon |
| * | NC_000913 | 574,873 | 0 | A→T | 100.0% | 0.6 | 4 | I294N (ATC→AAC) | insH1 | IS5 transposase and trans‑activator |
| * | NC_000913 | 719,563 | 1 | .→G | 1.1% | 0.6 0.0 ‑0.1 | 188 | coding (898/2199 nt) | speF | ornithine decarboxylase isozyme, inducible |
| * | NC_000913 | 2,727,144 | 0 | A→C | 100.0% | 0.6 | 2 | noncoding (2041/2904 nt) | rrlG | 23S ribosomal RNA of rrnG operon |
| * | NC_000913 | 4,391,363 | 1 | .→C | 1.1% | 0.5 0.0 ‑0.0 | 184 | coding (147/1053 nt) | rsgA | ribosome small subunit‑dependent GTPase A |
| * | NC_000913 | 459,322 | 1 | .→A | 1.1% | 0.3 0.0 ‑0.1 | 186 | coding (435/2355 nt) | lon | DNA‑binding ATP‑dependent protease La |
| * | NC_000913 | 856,866 | 1 | .→G | 1.1% | 0.3 0.0 ‑0.1 | 190 | coding (904/1593 nt) | ybiT | ABC‑F family putative regulatory ATPase |
| * | NC_000913 | 3,461,805 | 1 | .→A | 1.1% | 0.2 0.0 ‑0.1 | 184 | coding (338/510 nt) | gspH | putative general secretory pathway component, cryptic |
| * | NC_000913 | 3,515,472 | 2 | .→T | 1.0% | 0.0 0.0 ‑0.1 | 202 | coding (442/837 nt) | dam | DNA adenine methyltransferase |