Read alignment evidence...
  seq id position change freq score reads annotation genes product
*NC_0009133,425,0740C→G100.0% 1.1 3noncoding (1710/2904 nt)rrlD23S ribosomal RNA of rrnD operon
Rejected: E-value exceeds prediction threshold.
Reads supporting (aligned to +/- strand):  new base (2/0):  ref base (0/0):  total (3/0)

CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCTTGCGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTCGTGTTTGCACAGTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGACTGATTTCAGCTCCACGAGCAAGTCGCTTCACCTACATATCAGCGTGCCTTCTCCCGAAGTTACGGCACCATTTTGCCT‑AGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTGTGTCGGTTTGGGGTACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCCTCGTCATCACGCCTCAGCCTTGATTTTCC  >  NC_000913/3424862‑3425284
                                                                                                                                                                                                                    |                                                                                                                                                                                                                   
ccGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCTTGCGCTGACCCCATCACTTAACCTTCCGGCACCGGGCAGGCGTCACCCCGTATCCGCCCACTTTCGTGTTGGCACTGTGCTGTGTTTTTACTAGACAGTTGCCGCTCGCTGGTATCTTCGAATGATTTCAGCTCCACGAGCAATTCACTGCACCCACATAATAGCGTCCCTTCACCCGACGTTACGGCACCCTTTTGCCTCTGTTCTCTGA‑CCGTGTACTCCAAAACACCTTGGTATtctccgctctctt                                                                                                                            >  1:849223/1‑292 (MQ=11)
                                                                                                                          gcagtaggCTGTGTTTTTAATAGACAGTTGCAGACAGCTGGGATCTTCGACTGATTTCAGCTCCACGAGCACGTCGCTTCACCTACATCTGAGGGTGCCTTCTCCCGAAGTTACGGCAGCATTTTGCCT‑AGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTGTGTCGGTTTGGGGTACGATTTGCTGTTACCTGATGCTTAGAGGCTTTTCCTGGAAACAGGGCATTTTTGGCTTCAGCACCTTTTTGCCTCTGTATCCACCCGCAGCCTTTAtttgcg  >  1:348125/8‑298 (MQ=1)
                                                                                                                          gCATAGTGCTGTGTTTTTAATAAACAGTTGCAGCCAGATGGTATCTTCGACTGATTTCAGCACCACGAGTAAGTCGCTTCACATACAGACGAGCGTGCCTTCTACCGAAGCCACGCCGCTATTTTGACG‑ACTACCTGCAACAGAGTTATCACAAGAGCCATGGTGTTCTCTAATTGCTCTTCTGTGTTGGTTTGAGATACGATTTGATGTTACCTCAGGTTTCGTCGTTTTTCCTGTATATGGGTTTTTTGTTGCTTCAGCACCTTGGCGCCttttctccccatctaagcctttctttt    >  1:20328/1‑273 (MQ=0)
                                                                                                                                                                                                                    |                                                                                                                                                                                                                   
CCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCTTGCGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCGTATACGTCCACTTTCGTGTTTGCACAGTGCTGTGTTTTTAATAAACAGTTGCAGCCAGCTGGTATCTTCGACTGATTTCAGCTCCACGAGCAAGTCGCTTCACCTACATATCAGCGTGCCTTCTCCCGAAGTTACGGCACCATTTTGCCT‑AGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCTGACCACCTGTGTCGGTTTGGGGTACGATTTGATGTTACCTGATGCTTAGAGGCTTTTCCTGGAAGCAGGGCATTTGTTGCTTCAGCACCGTAGTGCCTCGTCATCACGCCTCAGCCTTGATTTTCC  >  NC_000913/3424862‑3425284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.