mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,497,909 | 0 | A | G | 34.4% | 163.5 / 142.3 | 151 | I352V (ATT→GTT) | opgD | OPG biosynthetic periplasmic protein |
| * | NC_000913 | 4,296,268 | 0 | T | C | 29.2% | 109.0 / 53.7 | 76 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,191 | 0 | A | C | 27.1% | 76.9 / 38.2 | 71 | intergenic (+397/+245) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,296,190 | 0 | A | G | 25.4% | 75.4 / 33.8 | 71 | intergenic (+396/+246) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,688,287 | 0 | A | C | 22.7% | 224.4 / 11.7 | 111 | V296G (GTG→GGG) | bcsC | cellulose synthase subunit |
| * | NC_000913 | 4,472,236 | 0 | T | G | 20.0% | 236.8 / 13.5 | 110 | T54P (ACC→CCC) | pyrB | aspartate carbamoyltransferase, catalytic subunit |
| Marginal new junction evidence (lowest skew 10 of 71 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 125 (0.930) | 18 (0.140) | 18/566 | 11.7 | 14.1% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 101 (0.790) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1207805 | 123 (0.910) | 15 (0.120) | 13/566 | 14.0 | 12.2% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 100 (0.780) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 4542690 | 175 (1.300) | 10 (0.080) | 10/580 | 16.0 | 5.9% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 148 (1.130) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | 4542682 = | 173 (1.290) | 12 (0.090) | 10/580 | 16.0 | 7.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 148 (1.130) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 149687 | 140 (1.040) | 5 (0.040) | 5/572 | 19.4 | 3.5% | intergenic (‑86/+28) | panB/yadC | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/putative fimbrial‑like adhesin protein |
| ? | NC_000913 | = 149698 | 141 (1.100) | intergenic (‑97/+17) | panB/yadC | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/putative fimbrial‑like adhesin protein | |||||
| * | ? | NC_000913 | 2066551 = | 154 (1.140) | 5 (0.040) | 5/584 | 19.7 | 3.2% | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 2102204 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 274347 = | NA (NA) | 5 (0.040) | 5/584 | 19.7 | NA | noncoding (803/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274410 = | NA (NA) | noncoding (740/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | 1279366 = | 136 (1.010) | 5 (0.040) | 5/588 | 19.8 | 4.0% | intergenic (+18/‑498) | narK/narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit |
| ? | NC_000913 | 1279464 = | 109 (0.820) | intergenic (+116/‑400) | narK/narG | nitrate/nitrite transporter/nitrate reductase 1, alpha subunit | |||||
| * | ? | NC_000913 | = 3304484 | NA (NA) | 5 (0.040) | 4/576 | 20.3 | NA | intergenic (+29/+89) | yhbW/mtr | putative luciferase‑like monooxygenase/tryptophan transporter of high affinity |
| ? | NC_000913 | = 3304553 | NA (NA) | intergenic (+98/+20) | yhbW/mtr | putative luciferase‑like monooxygenase/tryptophan transporter of high affinity | |||||
| * | ? | NC_000913 | 765910 = | 120 (0.890) | 4 (0.030) | 4/576 | 20.3 | 3.6% | intergenic (‑35/‑74) | mngR/mngA | transcriptional repressor for the mannosyl‑D‑glycerate catabolic operon/fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component |
| ? | NC_000913 | 766005 = | 100 (0.770) | coding (22/1977 nt) | mngA | fused 2‑O‑a‑mannosyl‑D‑glycerate specific PTS enzymes: IIA component/IIB component/IIC component | |||||