mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 81 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2780748 = | 122 (0.980) | 3 (0.030) | 3/244 | NT | 2.5% | intergenic (‑22/+69) | arcD_2/arcB_2 | Arginine/ornithine antiporter/Ornithine carbamoyltransferase, catabolic |
| ? | USA300TCH1516_ALE | 2780797 = | 121 (1.030) | intergenic (‑71/+20) | arcD_2/arcB_2 | Arginine/ornithine antiporter/Ornithine carbamoyltransferase, catabolic | |||||
| * | ? | USA300TCH1516_ALE | = 2760340 | 137 (1.100) | 3 (0.030) | 3/236 | NT | 2.3% | coding (659/1371 nt) | citN | Citrate transporter |
| ? | USA300TCH1516_ALE | = 2760395 | 130 (1.140) | coding (604/1371 nt) | citN | Citrate transporter | |||||
| * | ? | USA300TCH1516_ALE | 2716742 = | 99 (0.790) | 3 (0.030) | 3/236 | NT | 3.5% | intergenic (+50/+100) | USA300HOU_RS13965/USA300HOU_RS13970 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 2716816 = | 75 (0.660) | intergenic (+124/+26) | USA300HOU_RS13965/USA300HOU_RS13970 | hypothetical protein/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | = 2681424 | 118 (0.950) | 4 (0.040) | 3/228 | NT | 3.4% | intergenic (‑459/+120) | USA300HOU_RS13810/mvaA | hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase |
| ? | USA300TCH1516_ALE | = 2681449 | 123 (1.120) | intergenic (‑484/+95) | USA300HOU_RS13810/mvaA | hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase | |||||
| * | ? | USA300TCH1516_ALE | = 2636366 | 100 (0.800) | 4 (0.040) | 4/236 | NT | 3.9% | intergenic (‑419/+50) | fnbA_2/gntT | Fibronectin‑binding protein A/High‑affinity gluconate transporter |
| ? | USA300TCH1516_ALE | = 2636392 | 107 (0.940) | intergenic (‑445/+24) | fnbA_2/gntT | Fibronectin‑binding protein A/High‑affinity gluconate transporter | |||||
| * | ? | USA300TCH1516_ALE | 2628271 = | 123 (0.990) | 4 (0.030) | 4/242 | NT | 3.5% | intergenic (+141/+70) | sarU/gtaB | HTH‑type transcriptional regulator SarU/UTP‑‑glucose‑1‑phosphate uridylyltransferase |
| ? | USA300TCH1516_ALE | 2628335 = | 103 (0.880) | intergenic (+205/+6) | sarU/gtaB | HTH‑type transcriptional regulator SarU/UTP‑‑glucose‑1‑phosphate uridylyltransferase | |||||
| * | ? | USA300TCH1516_ALE | = 2543400 | 115 (0.920) | 5 (0.040) | 5/240 | NT | 4.3% | intergenic (+194/‑373) | hlgA/hlgC_2 | Gamma‑hemolysin component A/Gamma‑hemolysin component C |
| ? | USA300TCH1516_ALE | = 2543418 | 118 (1.020) | intergenic (+212/‑355) | hlgA/hlgC_2 | Gamma‑hemolysin component A/Gamma‑hemolysin component C | |||||
| * | ? | USA300TCH1516_ALE | 2527385 = | 122 (0.980) | 3 (0.030) | 3/236 | NT | 2.9% | intergenic (‑134/+83) | nirC/USA300TCH1516_02411 | Nitrite transporter NirC/hypothetical protein |
| ? | USA300TCH1516_ALE | 2527456 = | 87 (0.760) | intergenic (‑205/+12) | nirC/USA300TCH1516_02411 | Nitrite transporter NirC/hypothetical protein | |||||
| * | ? | USA300TCH1516_ALE | 2525575 = | 131 (1.050) | 3 (0.030) | 3/228 | NT | 2.8% | intergenic (‑147/+83) | sirB/ytmI | Sirohydrochlorin ferrochelatase/putative N‑acetyltransferase YtmI |
| ? | USA300TCH1516_ALE | 2525640 = | 95 (0.860) | intergenic (‑212/+18) | sirB/ytmI | Sirohydrochlorin ferrochelatase/putative N‑acetyltransferase YtmI | |||||
| * | ? | USA300TCH1516_ALE | = 2494792 | 140 (1.120) | 4 (0.040) | 3/236 | NT | 3.0% | intergenic (‑155/+52) | USA300HOU_RS12845/mnmC_2 | hypothetical protein/tRNA 5‑methylaminomethyl‑2‑thiouridine biosynthesis bifunctional protein MnmC |
| ? | USA300TCH1516_ALE | = 2494816 | 128 (1.120) | intergenic (‑179/+28) | USA300HOU_RS12845/mnmC_2 | hypothetical protein/tRNA 5‑methylaminomethyl‑2‑thiouridine biosynthesis bifunctional protein MnmC | |||||