| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2760340 | 137 (1.100) | 3 (0.030) | 3/236 | NT | 2.3% | coding (659/1371 nt) | citN | Citrate transporter |
| ? | USA300TCH1516_ALE | = 2760395 | 130 (1.140) | coding (604/1371 nt) | citN | Citrate transporter | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ATCGATAGAATAACAGCTAAAGTTAAAGCTGTATTCACCCATTTTATCCATGATTTTGTTCTTGCACGTCCTTTTACAGGAAACCTTACATCTTGATCTCGTTCATATACTTCAACTAATTTATGTACATCTATATCTTGTGTTTGCGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2760190‑2760340‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtttgcggtaTATCTTGGATTTAAAGAACAGAAACGTATCAAAAAAGCAATAGAGAGAAATGAATTACCGCAAACACAAGATATAGATGTACATAAATTAGTTGAAGTATATGAACGAGATCAAGATGTAAGGTTTCCTGTAAAAGGACG < USA300TCH1516_ALE/2760395‑2760256 ATCGATATAATAACAGCTAAAGTTAAAGCTGTATTCACCCATTTTATCCATGATTTTGTTCTTGCACGTCCTTTTACAGGAAACCTTACATCTTGATCTCGTTCATATACTTCAACTAATTTATGTACATCTATATCTTGT < 1:229484/141‑1 TCGATAGAATAACAGCTAAAGTTAAAGCTGTATTCACCCATTTTATCCATGATTTTGTTCTTGCACGTCCTTTTACAGGAAACCTTACATCTTGATCTCGTTCATATACTTCAACTAATTTATGTACATCTATATCTTGTG > 2:95346/1‑141 CGATAGAATAACAGCTAAAGTTAAAGCTGTATTCACCCATTTTATCCATGATTTTGTTCTTGCACGTCCTTTTACAGGAAACCTTACATCTTGATCTCGTTCATATACTTCAACTAATTTATGTACATCTATATCTTGTGT < 2:548975/141‑1 ATAGAATAACAGCTAAAGTTAAAGCTGTATTCACCCATTTTATCCATGATTTTGTTCTTGCACGTCCTTTTACAGGAAACCTTACATCTTGATCTCGTTCATATACTTCAACTAATTTATGTACATCTATATCTTGTGTTT > 4:354973/1‑141 ATAACAGCTAAAGTTAAAGCTGTATTCACCCATTTTATCCATGATTTTGTTCTTGCACGTCCTTTTACAGGAAACCTTACATCTTGATCTCGTTCATATACTTCAACTAATTTATGTACATCTATATCTTGTGTTTGCGGT < 3:27758/141‑1 TTCACCCATTTTATCCATGATTTTGTTCTTGCACGTCCTTTTACAGGAAACCTTACATCTTGATCTCGTTCATATACTTCAACTAATTTATGTACATCTATATCTTGTGT < 1:730694/110‑1 TTCACCCATTTTATCCATGATTTTGTTCTTGCACGTCCTTTTACAGGAAACCTTACATCTTGATCTCGTTCATATACTTCAACTAATTTATGTACATCTATATCTTGTGT > 2:730694/1‑110 GTCCTTTTACAGGAAACCTTACATCTTGATCTCGTTCATATACTTCAACTAATTTATGTACATCTATATCTTGTGTTTGCGGTATATCTTGGATTTAAAGAACAGAAACGTATCAAAAAAGCGATAGAGAGAAATGAATTA < 3:320905/141‑1 TTTTACAGGAAACCTTACATCTTGATCTCGTTCATATACTTCAACTAATTTATGTACATCTATATCTTGTGTTTGCGGTATATCTTGGATTTAAAGAACAGAAACGTATCAAAAAAGCAATAGAGAGAAATGAATTACCGC < 4:436010/141‑1 TTGATCTCGTTCATATACTTCAACTAATTTATGTACATCTATATCTTGTGTTTGCGGTATATCTTGGATTTAAAGAACAGAAACGTATCAAAAAAGCAATAGAGAGAAATGAATTACCGCAAACACAAGATATAGATGTAC < 3:3169/141‑1 TGTTTGCGGTATATCTTGGATTTAAAGAACAGAAACGTATCAAAAAAGCAATAGAGAGAAATGAATTACCGCAAACACAAGATATAGATGTACATAAATTAGTTGAAGTATATGAACGAGATCAAGATGTAAGGTTTCCTG > 1:805999/1‑141 TTTGCGGTATATCTTGGATTTAAAGAACAGAAACGTATCAAAAAAGCAATAGAGAGAAATGAATTACCGCAAACACAAGATATAGATGTACATAAATTAGTTGAAGTATATGAACGAGATCAAGATGTAAGGTTTCCTGTA < 1:867796/141‑1 TTGCGGTATATCTTGGATTTAAAGAACAGAAACGTATCAAAAAAGCAATAGAGAGAAATGAATTACCGCAAACACAAGATATAGATGTACATAAATTAGTTGAAGTATATGAACGAGATCAAGATGTAAGGTTTCCTGTAA > 3:207935/1‑141 TTGCGGTATATCTTGGATTTAAAGAACAGAAACATATCAAAAAAGCAATAGAGAGAAATGAATTACCGCAAACACAAGATATAGATGTACATAAATTAGTTGAAGTATATGAACGAGATCAAGATGTAAGGTTTCCTGTAA < 2:357321/141‑1 TTGCGGTATATCTTGGACGCAACAAACATAAACGTATCAAAAAAGCAATAGAGAGAAATGAATTACCGCAAACACAAGATATAGATGTACATAAATTAGTTGAAGTATATGAACGAGATCAAGATGTAAGGTTTCCTGTAA > 4:111461/1‑141 CGGTATATCTTGGATTTAAAGAACAGAAACGTATCAAAAAAGCAATAGAGAGAAATGAATTACCGCAAACACAAGATATAGATGTACATAAATTAGTTGAAGTATATGAACGAGATCAAGATGTAAGGTTTCCTGTAAAAG < 2:446448/141‑1 CGGTATATCTTGGATTTAAAGAACAGAAACGTATCAAAAAAGCAATAGAGAGAAATGAATTACCGCAAACACAAGATATAGATGTACATAAATTAGTTGAAGTATATGAACGAGATCAAGATGTAAGGTTTCCTGTAAAAG > 1:1087380/1‑141 CGGTATATCTTGGATTTAAAGAACAGAAACGTATCAAAAAAGCAATAGAGAGAAATGAATTACCGCAAACACAAGATATAGATGTACATAAATTAGTTGAAGTATATGAACGAGATCAAGATGTAAGGTTTCCTGTAAAAG > 2:862034/1‑141 GGTATATCTTGGATTTAAAGAACAGAAACGTATCAAAAAAGCAATAGAGAGAAATGAATTACCGCAAACACAAGATATAGATGTACATAAATTAGTTGAAGTATATGAACGAGATCAAGATGTAAGGTTTCCTGTAAAAGG < 1:241514/141‑1 GGTATATCTTGGATTTAAAGAACAGAAACGTATCAAAAAAGCAATAGAGAGAAATGAATTACCGCAAACACAAGATATAGATGTACATAAATTAGTTGAAGTATATGAACGAGATCAAGATGTAAGGTTTCCTGTAAAAGG > 2:163569/1‑141 ATATCTTGGATTTAAAGAACAGAAACGTATCAAAAAAGCAATAGAGAGAAATGAATTACCGCAAACACAAGATATAGATGTACATAAATTAGTTGAAGTATATGAACGAGATCAAGATGTAAGGTTTCCTGTAAAAGGACG < 1:615522/141‑1 ATCGATAGAATAACAGCTAAAGTTAAAGCTGTATTCACCCATTTTATCCATGATTTTGTTCTTGCACGTCCTTTTACAGGAAACCTTACATCTTGATCTCGTTCATATACTTCAACTAATTTATGTACATCTATATCTTGTGTTTGCGGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2760190‑2760340‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtttgcggtaTATCTTGGATTTAAAGAACAGAAACGTATCAAAAAAGCAATAGAGAGAAATGAATTACCGCAAACACAAGATATAGATGTACATAAATTAGTTGAAGTATATGAACGAGATCAAGATGTAAGGTTTCCTGTAAAAGGACG < USA300TCH1516_ALE/2760395‑2760256 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |