| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2780748 = | 122 (0.980) | 3 (0.030) | 3/244 | NT | 2.5% | intergenic (‑22/+69) | arcD_2/arcB_2 | Arginine/ornithine antiporter/Ornithine carbamoyltransferase, catabolic |
| ? | USA300TCH1516_ALE | 2780797 = | 121 (1.030) | intergenic (‑71/+20) | arcD_2/arcB_2 | Arginine/ornithine antiporter/Ornithine carbamoyltransferase, catabolic | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CATTCAAAAGTGTTTGATCAAGCTGAAAATAGAATGCATACAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAATCACTAAATGGAACGATATGAATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCTCATATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2780894‑2780748‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatattCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTCAGCTAA > USA300TCH1516_ALE/2780797‑2780936 CATTCAAAATTATTTGATCAAGCTGAAAATAGAATTCATACAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAATCACTAAATGGAACGATATGAATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCT < 1:195899/141‑1CATTCAAAAGTGTTTGATCAAGCTGAAAATAGAATGCATACAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAATCACTAAATGGAACGATATGAATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCT < 3:115346/141‑1CATTCAAAAGTGTTTGATCAAGCTGAAAATAGAATGCATACAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAATCACTAAATGGAACGATATGAATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCT < 2:881020/141‑1 ATTCAAAAGTGTTTGATCAAGCTGAAAATAGAATGCATACAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAATCACTAAATGGAACGATATGAATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCTC < 4:185728/141‑1 ATTCAAAAGTGTTTGATCAAGCTGAAAATAGAATGCATACAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAATCACTAAATGGAACGATATGAATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCTC < 1:1021524/141‑1 ATTCAAAAGTGTTTGATCAAGCTGAAAATAGAATGCATACAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAATCACTAAATGGAACGATATGAATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCTC < 2:757492/141‑1 TTCAAAAGTGTTTGATCAAGCTGAAAATAGAATGCATACAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAATCACTAAATGGAACGATATGAATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCTCA < 1:536362/141‑1 TCAAAAGTGTTTGATCAAGCTGAAAATAGAATGCATACAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAATCACTAAATGGAACGATATGAATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCTCAT < 3:217903/141‑1 CAAAAGTGTTTGATCAAGCTGAAAATAGAATGCATACAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAATCACTAAATGGAACGATATGAATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCTCATA > 2:334337/1‑141 AAAAGTGTTTGATCAAGCTGAAAATAGAATGCATACAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAATCACTAAATGGAACGATATGAATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCTCATAT > 3:27087/1‑141 AAAAGTGTTTGATCAAGCTGAAAATAGAATGCATACAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAATCACTAAATGGAACGATATGAATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCTCATAT < 2:354880/141‑1 AAAAGTGTTTGATCAAGCTGAAAATAGAATGCATACAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAATCACTAAATGGAACGATATGAATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCTCATAT < 2:354549/141‑1 AAAGTGTTTGATCAAGCTGAAAATAGAATGCATACAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAATCACTAAATGGAACGATATGAATATGCTGTGTCTGATGATATAAGTGTCATGTACAGACACCTCATATT < 2:334932/141‑1 AAAGTGTTTGATCAAGCTGAAAATAGAATGCATACAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAATCACTAAATGGAACGATATGAATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCTCATATT < 1:353882/141‑1 AAAGTGTTTGATCAAGCTGAAAATAGAATGCATACAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAATCACTAAATGGAACGATATGAATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCTCATATT < 2:174009/141‑1 AAAGTGTTTGATCAAGCTGAAAATAGAATGCATAAAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAATCACTAAATGGAACGATATGAATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCTCATATT < 3:316580/141‑1 ATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCTCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTT > 3:446297/1‑141 TATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCTCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTG > 3:100631/1‑141 TGATGTGTCTGATGATATAAGTGTCATGTACAGACACCTCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAA > 2:479825/1‑141 TCATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTC > 2:287784/1‑141 ATATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTCAG < 3:433985/141‑1 TATTCATATCGTTCCATTTTGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTACTTGTATGCACTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTATAGATTTGGTCGGTAACTTCCATTTCAGC > 2:586212/1‑141 TATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTCAGC > 3:354440/1‑141 TATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTCAGC > 1:859423/1‑141 TATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCAATTACTGCCTTAATTGTATGAATTCTATTTTAAGCTTGATCACAGCCTTTTGCATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTCAGC > 1:702572/1‑141 ATTCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTCAGCT < 2:129769/141‑1 TCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTCAGCTAA < 3:106805/141‑1 TCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTCAGCTAA > 1:549127/1‑141 TCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTCAGCTAA < 1:62101/141‑1 CATTCAAAAGTGTTTGATCAAGCTGAAAATAGAATGCATACAATTAAGGCAGTAATGGCAGCAACATTGGGGAGTTAATCACTAAATGGAACGATATGAATATGATGTGTCTGATGATATAAGTGTCATGTACAGACACCTCATATT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2780894‑2780748‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcatattCATATCGTTCCATTTAGTGATTAACTCCCCAATGTTGCTGCCATTACTGCCTTAATTGTATGCATTCTATTTTCAGCTTGATCAAACACTTTTGAATGTTCACTTCTAAAGATTTGGTCTGTAACTTCCATTTCAGCTAA > USA300TCH1516_ALE/2780797‑2780936 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |