mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_bme_pgi | 4,296,061 | 0 | C | T | 30.5% | 249.5 / 140.9 | 174 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_bme_pgi | 526,800 | 0 | A | G | 21.5% | 413.4 / 95.9 | 191 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,796 | 0 | C | G | 21.0% | 518.8 / 125.6 | 200 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,792 | 0 | A | C | 20.6% | 436.0 / 125.7 | 210 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| Marginal new junction evidence (lowest skew 10 of 700 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 2068389 = | 159 (1.200) | 24 (0.210) | 21/218 | 9.7 | 17.1% | pseudogene (31/159 nt) | yoeH | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related |
| ? | NC_000913_3_bme_pgi | 2068430 = | 96 (0.850) | intergenic (‑11/‑205) | yoeH/yoeA | pseudogene, CP4‑44 putative prophage remnant;Phage or Prophage Related/CP4‑44 prophage; putative disrupted hemin or colicin receptor;Phage or Prophage Related; interrupted by IS2 and C‑terminal deletion | |||||
| * | ? | NC_000913_3_bme_pgi | 3328172 = | 170 (1.290) | 25 (0.210) | 22/234 | 10.1 | 13.3% | intergenic (+89/+67) | yhbY/greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor |
| ? | NC_000913_3_bme_pgi | 3328195 = | 170 (1.400) | intergenic (+112/+44) | yhbY/greA | RNA binding protein associated with pre‑50S ribosomal subunits/transcript cleavage factor | |||||
| * | ? | NC_000913_3_bme_pgi | = 225281 | NA (NA) | 28 (0.220) | 23/244 | 10.3 | NA | noncoding (1511/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_bme_pgi | = 225293 | NA (NA) | noncoding (1523/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 4597121 | NA (NA) | 21 (0.180) | 20/230 | 10.7 | NA | noncoding (24/39 nt) | REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913_3_bme_pgi | = 4597126 | NA (NA) | noncoding (29/39 nt) | REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP350 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
| * | ? | NC_000913_3_bme_pgi | = 3946053 | 7 (0.050) | 30 (0.230) | 20/246 | 11.5 | 81.6% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_bme_pgi | = 3946069 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913_3_bme_pgi | 3269955 = | 149 (1.130) | 22 (0.180) | 18/230 | 11.5 | 15.3% | intergenic (+353/+261) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| ? | NC_000913_3_bme_pgi | 3269983 = | 108 (0.900) | intergenic (+381/+233) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component | |||||
| * | ? | NC_000913_3_bme_pgi | 984483 = | 174 (1.320) | 23 (0.190) | 19/238 | 11.5 | 12.3% | intergenic (+186/+36) | ycbL/aspC | putative metal‑binding enzyme/aspartate aminotransferase, PLP‑dependent |
| ? | NC_000913_3_bme_pgi | 984503 = | 164 (1.320) | intergenic (+206/+16) | ycbL/aspC | putative metal‑binding enzyme/aspartate aminotransferase, PLP‑dependent | |||||
| * | ? | NC_000913_3_bme_pgi | = 228108 | NA (NA) | 30 (0.230) | 20/246 | 11.5 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_bme_pgi | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 446785 | 109 (0.820) | 21 (0.170) | 18/234 | 11.7 | 17.7% | intergenic (‑119/+30) | yajR/cyoE | putative transporter/protoheme IX farnesyltransferase |
| ? | NC_000913_3_bme_pgi | = 446789 | 95 (0.780) | intergenic (‑123/+26) | yajR/cyoE | putative transporter/protoheme IX farnesyltransferase | |||||
| * | ? | NC_000913_3_bme_pgi | = 1463456 | 145 (1.100) | 19 (0.160) | 17/232 | 12.0 | 13.0% | intergenic (+18/‑83) | paaK/paaX | phenylacetyl‑CoA ligase/transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer |
| ? | NC_000913_3_bme_pgi | = 1463468 | 123 (1.020) | intergenic (+30/‑71) | paaK/paaX | phenylacetyl‑CoA ligase/transcriptional repressor of phenylacetic acid degradation paa operon, phenylacetyl‑CoA inducer | |||||